Wall clock time and date at job start Tue Mar 31 2020 23:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47237 * 274.98018 * 3 2 1 5 5 H 1.48492 * 109.47433 * 34.98061 * 3 2 1 6 6 H 1.48503 * 109.47020 * 154.98148 * 3 2 1 7 7 C 1.38811 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00156 * 172.31602 * 7 2 1 9 9 N 1.36930 * 119.99937 * 352.31024 * 7 2 1 10 10 C 1.48386 * 126.56215 * 355.82935 * 9 7 2 11 11 C 1.55469 * 106.97260 * 174.50967 * 10 9 7 12 12 C 1.53221 * 101.28027 * 336.94511 * 11 10 9 13 13 H 1.08994 * 111.56193 * 282.59846 * 12 11 10 14 14 C 1.45023 * 126.56298 * 175.87569 * 9 7 2 15 15 H 1.09009 * 108.70503 * 96.46838 * 14 9 7 16 16 C 1.51080 * 119.19472 * 331.19018 * 14 9 7 17 17 C 1.53873 * 107.34575 * 176.74076 * 16 14 9 18 18 C 1.52715 * 111.52501 * 56.92494 * 17 16 14 19 19 N 1.45619 * 115.88295 * 153.35117 * 12 11 10 20 20 C 1.34775 * 122.16162 * 10.08731 * 19 12 11 21 21 O 1.21676 * 119.99875 * 5.33013 * 20 19 12 22 22 C 1.46914 * 120.00098 * 185.32907 * 20 19 12 23 23 C 1.36367 * 126.76835 * 27.86240 * 22 20 19 24 24 N 1.35470 * 109.76825 * 180.02562 * 23 22 20 25 25 H 0.97006 * 124.78530 * 179.97438 * 24 23 22 26 26 C 1.37954 * 110.43052 * 359.97438 * 24 23 22 27 27 C 1.39117 * 133.19372 * 180.02562 * 26 24 23 28 28 C 1.37774 * 119.93017 * 179.26092 * 27 26 24 29 29 C 1.38756 * 120.63280 * 0.57774 * 28 27 26 30 30 C 1.37749 * 120.30084 * 359.64135 * 29 28 27 31 31 C 1.39276 * 119.67299 * 359.97438 * 30 29 28 32 32 H 0.97005 * 120.00156 * 359.97438 * 1 2 3 33 33 H 1.08991 * 109.96360 * 293.89495 * 10 9 7 34 34 H 1.09001 * 109.95599 * 55.10344 * 10 9 7 35 35 H 1.09009 * 110.98682 * 95.50137 * 11 10 9 36 36 H 1.09001 * 110.98787 * 219.26919 * 11 10 9 37 37 H 1.08994 * 109.88518 * 57.27825 * 16 14 9 38 38 H 1.09000 * 109.87950 * 296.19197 * 16 14 9 39 39 H 1.09003 * 109.06582 * 296.40065 * 17 16 14 40 40 H 1.08996 * 109.01536 * 177.42582 * 17 16 14 41 41 H 1.09000 * 109.15818 * 71.87111 * 18 17 16 42 42 H 1.09003 * 109.16063 * 191.10991 * 18 17 16 43 43 H 1.08003 * 125.11817 * 0.02562 * 23 22 20 44 44 H 1.07996 * 120.03828 * 359.97438 * 27 26 24 45 45 H 1.07999 * 119.68509 * 180.17238 * 28 27 26 46 46 H 1.07997 * 119.84833 * 179.62228 * 29 28 27 47 47 H 1.08001 * 120.16380 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2021 -0.0005 8 1 3.0830 -1.2063 -0.1256 9 7 1.3348 -2.3827 0.1576 10 6 -0.1160 -2.5421 0.4254 11 6 -0.4207 -4.0660 0.3821 12 6 0.7404 -4.5796 -0.4755 13 1 0.5776 -4.3757 -1.5338 14 6 1.9006 -3.7166 0.0964 15 1 2.1141 -4.0527 1.1111 16 6 3.1193 -3.9615 -0.7623 17 6 3.5331 -5.4301 -0.5633 18 6 2.3911 -6.3851 -0.9038 19 7 1.1342 -5.9632 -0.2494 20 6 0.3998 -6.8039 0.5057 21 8 -0.6768 -6.4446 0.9444 22 6 0.8990 -8.1541 0.7992 23 6 2.2037 -8.5447 0.8691 24 7 2.2714 -9.8658 1.1612 25 1 3.0948 -10.3688 1.2618 26 6 1.0045 -10.3949 1.2953 27 6 0.5311 -11.6706 1.5849 28 6 -0.8252 -11.8978 1.6690 29 6 -1.7293 -10.8672 1.4555 30 6 -1.2803 -9.5982 1.1631 31 6 0.0883 -9.3525 1.0829 32 1 -0.4850 0.8401 0.0004 33 1 -0.3589 -2.1418 1.4096 34 1 -0.6945 -2.0245 -0.3398 35 1 -0.4007 -4.4967 1.3833 36 1 -1.3767 -4.2592 -0.1047 37 1 3.9301 -3.3026 -0.4517 38 1 2.8765 -3.7836 -1.8099 39 1 3.8249 -5.5801 0.4761 40 1 4.3848 -5.6494 -1.2072 41 1 2.2453 -6.3977 -1.9839 42 1 2.6510 -7.3884 -0.5662 43 1 3.0549 -7.8981 0.7148 44 1 1.2262 -12.4794 1.7551 45 1 -1.1882 -12.8891 1.8968 46 1 -2.7899 -11.0609 1.5185 47 1 -1.9860 -8.7977 0.9969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049576774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:42 Heat of formation + Delta-G solvation = 57.132685 kcal Electronic energy + Delta-G solvation = -29893.205801 eV Core-core repulsion = 26041.915489 eV Total energy + Delta-G solvation = -3851.290312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54972 -41.34977 -38.99935 -37.93524 -36.88240 -34.34293 -33.82926 -32.93393 -31.05351 -30.49599 -30.10680 -29.30964 -26.47391 -26.21138 -24.02109 -23.44783 -22.90764 -22.70235 -22.09177 -21.25939 -19.83420 -18.86722 -18.38760 -17.64685 -17.17937 -17.02750 -16.58234 -16.42697 -16.13329 -15.78703 -15.51973 -15.31855 -15.15715 -14.82596 -14.76437 -14.56503 -14.30239 -14.17590 -13.85413 -13.43848 -13.36287 -13.07373 -12.87964 -12.69985 -12.62516 -12.57304 -12.23849 -12.08303 -11.89370 -11.87283 -11.75119 -11.67535 -11.55166 -11.39796 -10.77107 -10.68501 -10.43749 -9.53094 -9.25093 -8.90556 -8.70445 -7.80763 -5.21154 0.03173 0.60359 1.06259 1.45900 1.48527 1.57519 1.93303 2.14155 2.35673 2.51788 2.97557 3.34325 3.37893 3.67276 3.71497 3.86467 3.94418 3.99803 4.07365 4.10527 4.22052 4.26006 4.35461 4.37724 4.43376 4.56771 4.59724 4.60659 4.70275 4.73186 4.77394 4.82083 4.95568 5.05702 5.12668 5.17245 5.18019 5.30404 5.42387 5.46434 5.50401 5.53918 5.56932 5.64026 5.67813 5.72594 5.75979 6.14979 6.20038 6.58086 6.61794 7.04843 7.32745 7.76215 8.46997 9.28154 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.002830 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.290132 B = 9892.562513 C =10760.575898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.231 4.231 8 H 0.091 0.909 9 N -0.611 5.611 10 C 0.174 3.826 11 C -0.108 4.108 12 C 0.134 3.866 13 H 0.075 0.925 14 C 0.154 3.846 15 H 0.005 0.995 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.085 3.915 19 N -0.597 5.597 20 C 0.583 3.417 21 O -0.583 6.583 22 C -0.264 4.264 23 C 0.128 3.872 24 N -0.557 5.557 25 H 0.442 0.558 26 C 0.078 3.922 27 C -0.118 4.118 28 C -0.105 4.105 29 C -0.140 4.140 30 C -0.103 4.103 31 C -0.095 4.095 32 H 0.245 0.755 33 H -0.010 1.010 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.225 0.775 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.138 0.862 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 -28.675 -0.462 30.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.359 4.359 8 H 0.109 0.891 9 N -0.335 5.335 10 C 0.049 3.951 11 C -0.146 4.146 12 C 0.028 3.972 13 H 0.093 0.907 14 C 0.045 3.955 15 H 0.022 0.978 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.035 4.035 19 N -0.329 5.329 20 C 0.374 3.626 21 O -0.464 6.464 22 C -0.274 4.274 23 C -0.005 4.005 24 N -0.160 5.160 25 H 0.284 0.716 26 C -0.028 4.028 27 C -0.138 4.138 28 C -0.123 4.123 29 C -0.159 4.159 30 C -0.122 4.122 31 C -0.099 4.099 32 H 0.055 0.945 33 H 0.009 0.991 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.142 0.858 43 H 0.241 0.759 44 H 0.176 0.824 45 H 0.176 0.824 46 H 0.156 0.844 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.455 -28.370 -0.215 29.904 hybrid contribution -0.322 1.807 0.166 1.843 sum 9.133 -26.563 -0.049 28.089 Atomic orbital electron populations 1.70180 1.06624 1.25198 1.58298 1.25722 0.96476 1.01296 1.02950 0.85050 0.77803 0.79090 0.77327 1.21125 1.22592 1.18976 1.19420 0.91573 0.83330 1.41622 0.89123 1.44376 1.04824 1.01109 1.83206 1.21556 0.85121 0.91391 0.97029 1.22546 0.97331 0.94767 1.00000 1.21935 0.96284 0.80798 0.98169 0.90738 1.20991 0.93946 0.84595 0.95924 0.97782 1.21406 0.96529 0.97773 0.99273 1.21929 0.98192 0.91980 1.03750 1.22554 0.82113 1.00426 0.98442 1.47861 1.25069 1.10078 1.49932 1.17747 0.83386 0.84099 0.77328 1.90752 1.23816 1.77310 1.54549 1.19952 0.94286 0.92576 1.20625 1.22826 0.97489 0.84920 0.95295 1.41523 1.07333 1.08071 1.59102 0.71577 1.18411 0.84429 0.94905 1.05056 1.20454 0.96602 0.93347 1.03356 1.21225 0.91996 0.99974 0.99147 1.21229 1.01063 0.92025 1.01577 1.20665 0.93790 0.97644 1.00109 1.19045 0.93780 0.92441 1.04655 0.94527 0.99134 0.94253 0.91691 0.92340 0.92082 0.92160 0.90799 0.86466 0.90377 0.85762 0.75943 0.82440 0.82359 0.84423 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.93 10.55 21.65 0.23 -59.71 16 2 C -0.07 -4.20 5.46 84.86 0.46 -3.73 16 3 Si 0.98 46.58 29.56 68.60 2.03 48.61 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.23 -13.04 9.91 84.03 0.83 -12.21 16 8 H 0.09 4.77 7.39 -2.91 -0.02 4.75 16 9 N -0.61 -32.81 3.34 -670.50 -2.24 -35.05 16 10 C 0.17 9.68 5.58 86.87 0.49 10.17 16 11 C -0.11 -5.11 4.87 31.52 0.15 -4.96 16 12 C 0.13 5.38 3.31 46.09 0.15 5.53 16 13 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 14 C 0.15 6.47 2.59 45.50 0.12 6.59 16 15 H 0.00 0.21 8.06 -2.38 -0.02 0.19 16 16 C -0.11 -3.52 5.46 30.26 0.17 -3.35 16 17 C -0.12 -2.28 5.90 30.79 0.18 -2.10 16 18 C 0.09 1.68 5.82 86.03 0.50 2.18 16 19 N -0.60 -18.98 2.91 -796.18 -2.32 -21.30 16 20 C 0.58 20.57 7.56 86.52 0.65 21.23 16 21 O -0.58 -25.97 13.87 -4.27 -0.06 -26.03 16 22 C -0.26 -7.10 5.88 -19.02 -0.11 -7.21 16 23 C 0.13 1.98 9.69 83.69 0.81 2.79 16 24 N -0.56 -6.35 5.99 -187.09 -1.12 -7.47 16 25 H 0.44 1.06 8.96 -92.70 -0.83 0.23 16 26 C 0.08 1.42 7.26 38.92 0.28 1.70 16 27 C -0.12 -1.61 10.07 22.37 0.23 -1.39 16 28 C -0.10 -1.54 10.01 22.28 0.22 -1.31 16 29 C -0.14 -2.86 10.03 22.28 0.22 -2.63 16 30 C -0.10 -2.90 10.08 22.40 0.23 -2.67 16 31 C -0.09 -2.56 6.30 -20.08 -0.13 -2.69 16 32 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 33 H -0.01 -0.59 8.11 -2.39 -0.02 -0.61 16 34 H 0.04 2.41 6.76 -2.39 -0.02 2.39 16 35 H 0.06 3.24 6.41 -2.38 -0.02 3.23 16 36 H 0.06 2.76 8.12 -2.39 -0.02 2.74 16 37 H 0.06 2.00 7.74 -2.39 -0.02 1.98 16 38 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.13 1.58 3.30 -2.39 -0.01 1.57 16 43 H 0.22 1.76 5.95 -2.91 -0.02 1.74 16 44 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 45 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 46 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.10 3.26 7.95 -2.91 -0.02 3.24 16 Total: -1.00 -85.47 365.24 2.15 -83.31 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.17 Total: 11.70 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.46 Total: 5.93 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -5.45 Total: -123.53 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -85.47 2.15 -83.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049576774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.447 kcal (2) G-P(sol) polarization free energy of solvation -85.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds