Wall clock time and date at job start Tue Mar 31 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48506 * 109.47319 * 240.00253 * 3 2 1 5 5 H 1.48500 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47010 * 120.00393 * 3 2 1 7 7 C 1.38811 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00272 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.48388 * 126.56185 * 0.02795 * 9 7 2 11 11 C 1.55473 * 106.97437 * 185.50002 * 10 9 7 12 12 C 1.53431 * 101.67069 * 22.59981 * 11 10 9 13 13 H 1.08996 * 111.74503 * 78.22122 * 12 11 10 14 14 C 1.45031 * 126.56490 * 180.02562 * 9 7 2 15 15 H 1.09000 * 108.26242 * 263.93996 * 14 9 7 16 16 C 1.51084 * 119.18050 * 28.81664 * 14 9 7 17 17 C 1.53863 * 107.34238 * 183.87623 * 16 14 9 18 18 C 1.53148 * 111.47042 * 302.92756 * 17 16 14 19 19 N 1.45718 * 116.37598 * 207.26086 * 12 11 10 20 20 C 1.34778 * 122.23306 * 350.09456 * 19 12 11 21 21 O 1.21573 * 119.99551 * 5.65215 * 20 19 12 22 22 C 1.47655 * 119.99953 * 185.65482 * 20 19 12 23 23 C 1.40208 * 119.97138 * 218.40921 * 22 20 19 24 24 C 1.36319 * 120.67085 * 179.70160 * 23 22 20 25 25 C 1.39369 * 120.23671 * 0.24872 * 24 23 22 26 26 N 1.37394 * 133.25354 * 179.97438 * 25 24 23 27 27 H 0.97003 * 125.00843 * 0.07874 * 26 25 24 28 28 C 1.36863 * 109.98490 * 180.02562 * 26 25 24 29 29 C 1.34191 * 109.95923 * 359.97438 * 28 26 25 30 30 C 1.40875 * 119.63808 * 0.02562 * 25 24 23 31 31 C 1.39150 * 119.97926 * 38.60335 * 22 20 19 32 32 H 0.96998 * 119.99657 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.95818 * 304.88086 * 10 9 7 34 34 H 1.09000 * 109.95980 * 66.12045 * 10 9 7 35 35 H 1.08999 * 110.98538 * 264.50297 * 11 10 9 36 36 H 1.08998 * 110.98208 * 140.69788 * 11 10 9 37 37 H 1.09002 * 109.88631 * 303.33913 * 16 14 9 38 38 H 1.09003 * 109.88178 * 64.41584 * 16 14 9 39 39 H 1.08993 * 109.07050 * 63.60419 * 17 16 14 40 40 H 1.09006 * 109.07035 * 182.61606 * 17 16 14 41 41 H 1.09000 * 109.32361 * 288.42517 * 18 17 16 42 42 H 1.08996 * 109.23881 * 169.08480 * 18 17 16 43 43 H 1.08003 * 119.66326 * 359.96690 * 23 22 20 44 44 H 1.07997 * 119.88325 * 180.26854 * 24 23 22 45 45 H 1.07996 * 125.02015 * 180.02562 * 28 26 25 46 46 H 1.08000 * 126.54428 * 179.97438 * 29 28 26 47 47 H 1.08004 * 120.29966 * 0.05464 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1486 -2.5576 -0.0006 11 6 -0.4303 -4.0800 0.1420 12 6 0.8712 -4.5777 0.7841 13 1 0.9036 -4.3605 1.8517 14 6 1.9024 -3.7187 -0.0005 15 1 1.9380 -4.0756 -1.0299 16 6 3.2558 -3.9350 0.6353 17 6 3.6450 -5.4043 0.3969 18 6 2.5895 -6.3619 0.9578 19 7 1.2343 -5.9641 0.5202 20 6 0.3888 -6.8276 -0.0764 21 8 -0.6782 -6.4343 -0.5064 22 6 0.7584 -8.2511 -0.2077 23 6 0.4289 -8.9555 -1.3743 24 6 0.7686 -10.2684 -1.5131 25 6 1.4457 -10.9301 -0.4904 26 7 1.9079 -12.2158 -0.3453 27 1 1.8175 -12.9178 -1.0086 28 6 2.5157 -12.3598 0.8725 29 6 2.4718 -11.2001 1.5463 30 6 1.7774 -10.2349 0.6891 31 6 1.4298 -8.8935 0.8281 32 1 -0.4849 0.8401 0.0004 33 1 -0.5851 -2.0181 0.8398 34 1 -0.5656 -2.1881 -0.9374 35 1 -0.5858 -4.5412 -0.8333 36 1 -1.2826 -4.2594 0.7973 37 1 3.9918 -3.2769 0.1734 38 1 3.1987 -3.7354 1.7054 39 1 3.7514 -5.5753 -0.6742 40 1 4.5987 -5.6039 0.8856 41 1 2.6328 -6.3485 2.0469 42 1 2.7971 -7.3719 0.6046 43 1 -0.0955 -8.4517 -2.1728 44 1 0.5123 -10.7976 -2.4190 45 1 2.9650 -13.2717 1.2369 46 1 2.8707 -11.0139 2.5325 47 1 1.6820 -8.3558 1.7302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049692018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:11 Heat of formation + Delta-G solvation = 73.883921 kcal Electronic energy + Delta-G solvation = -29743.248221 eV Core-core repulsion = 25892.684297 eV Total energy + Delta-G solvation = -3850.563924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54387 -40.25580 -37.96664 -36.52916 -35.33449 -32.60719 -32.43525 -31.93087 -30.04705 -29.07029 -28.63547 -28.03548 -25.00584 -24.39271 -23.23626 -22.34580 -21.42845 -21.18034 -20.55951 -19.62362 -18.90209 -18.28699 -16.90755 -16.53097 -16.05047 -15.51964 -15.15855 -14.72218 -14.65804 -14.49970 -14.40565 -14.07871 -13.92061 -13.68951 -13.44992 -13.15360 -12.92951 -12.84261 -12.54990 -12.38291 -12.11144 -11.78747 -11.72523 -11.45067 -11.15783 -10.99796 -10.79178 -10.63023 -10.46568 -10.37428 -10.07667 -9.98240 -9.88987 -9.77120 -9.54284 -8.93520 -8.52773 -8.42359 -8.13530 -7.98174 -6.75564 -5.63652 -2.97638 0.83717 1.15827 2.44256 2.81035 2.99363 3.24562 3.44612 3.48740 3.50266 3.79140 4.40122 4.51699 4.55335 4.66456 4.84521 4.94297 5.06218 5.15393 5.20360 5.30282 5.37374 5.43278 5.50504 5.51552 5.66266 5.67567 5.73043 5.85356 5.86361 5.94412 6.08282 6.11455 6.17313 6.28913 6.35572 6.38493 6.40395 6.44424 6.48700 6.64853 6.80515 6.83079 6.89705 6.99043 7.18053 7.28968 7.64972 7.73383 7.80325 7.91535 8.32076 8.52183 9.25964 9.89853 10.58860 11.48335 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.002692 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.383441 B =10397.611441 C =11013.607688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.133 4.133 12 C 0.117 3.883 13 H 0.080 0.920 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.101 3.899 19 N -0.594 5.594 20 C 0.563 3.437 21 O -0.529 6.529 22 C -0.148 4.148 23 C -0.046 4.046 24 C -0.138 4.138 25 C 0.111 3.889 26 N -0.595 5.595 27 H 0.415 0.585 28 C 0.044 3.956 29 C -0.195 4.195 30 C -0.121 4.121 31 C -0.036 4.036 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.135 0.865 44 H 0.124 0.876 45 H 0.170 0.830 46 H 0.148 0.852 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 -26.762 1.900 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.172 4.172 12 C 0.013 3.987 13 H 0.098 0.902 14 C 0.049 3.951 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.326 5.326 20 C 0.352 3.648 21 O -0.407 6.407 22 C -0.153 4.153 23 C -0.066 4.066 24 C -0.158 4.158 25 C 0.003 3.997 26 N -0.198 5.198 27 H 0.252 0.748 28 C -0.082 4.082 29 C -0.220 4.220 30 C -0.125 4.125 31 C -0.055 4.055 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.153 0.847 44 H 0.142 0.858 45 H 0.188 0.812 46 H 0.166 0.834 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.906 -26.404 1.600 27.104 hybrid contribution 0.560 0.493 -0.206 0.774 sum 6.466 -25.912 1.394 26.743 Atomic orbital electron populations 1.69944 1.04857 1.25091 1.56863 1.24800 0.95664 0.97572 1.02401 0.86234 0.78455 0.83453 0.77809 1.21259 1.21660 1.21236 1.18941 0.90279 0.82270 1.43838 0.90461 1.44091 1.01829 0.99326 1.86548 1.21736 0.83584 0.88836 1.01006 1.23038 0.94430 0.97908 1.01812 1.22413 0.98809 0.78409 0.99095 0.90236 1.20765 0.91416 0.87150 0.95756 0.96460 1.21433 0.98545 0.94229 1.01205 1.21978 0.97604 0.95620 1.01549 1.22138 0.81707 0.99155 0.99138 1.47891 1.14360 1.11327 1.59056 1.18164 0.83952 0.84892 0.77810 1.90774 1.23626 1.78038 1.48216 1.19772 1.04418 0.94470 0.96618 1.20564 0.96525 0.92781 0.96715 1.19670 1.03358 0.94788 0.98009 1.18414 0.99636 0.84970 0.96710 1.41776 1.50906 1.10123 1.17013 0.74803 1.21815 1.00468 1.00055 0.85829 1.21745 1.07405 0.92063 1.00817 1.19110 1.04481 0.93961 0.94967 1.20850 0.94220 0.92304 0.98136 0.93721 0.92657 0.94315 0.89398 0.92251 0.91547 0.91814 0.91822 0.91023 0.91566 0.89366 0.84732 0.85809 0.81246 0.83381 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 10.46 55.49 0.58 -27.08 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.30 9.94 -15.06 -0.15 -6.45 16 8 H 0.08 2.07 7.31 -52.49 -0.38 1.68 16 9 N -0.59 -15.51 3.35 -163.29 -0.55 -16.06 16 10 C 0.17 4.47 5.47 -1.69 -0.01 4.46 16 11 C -0.13 -2.93 5.11 -25.19 -0.13 -3.06 16 12 C 0.12 2.29 3.32 -66.82 -0.22 2.07 16 13 H 0.08 1.56 8.13 -51.93 -0.42 1.14 16 14 C 0.16 3.39 2.57 -68.38 -0.18 3.22 16 15 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 16 C -0.12 -2.02 5.45 -27.25 -0.15 -2.17 16 17 C -0.13 -1.72 5.94 -26.21 -0.16 -1.87 16 18 C 0.10 1.28 4.88 -3.22 -0.02 1.27 16 19 N -0.59 -9.74 2.91 -164.93 -0.48 -10.22 16 20 C 0.56 9.58 7.35 -12.42 -0.09 9.49 16 21 O -0.53 -10.75 13.61 5.30 0.07 -10.68 16 22 C -0.15 -2.04 5.25 -104.97 -0.55 -2.59 16 23 C -0.05 -0.57 9.54 -39.53 -0.38 -0.94 16 24 C -0.14 -1.38 10.00 -39.85 -0.40 -1.78 16 25 C 0.11 1.10 7.27 -83.95 -0.61 0.49 16 26 N -0.60 -4.01 6.05 -10.61 -0.06 -4.08 16 27 H 0.42 1.52 8.96 -40.82 -0.37 1.16 16 28 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 29 C -0.20 -1.60 11.09 -37.65 -0.42 -2.01 16 30 C -0.12 -1.29 6.36 -105.16 -0.67 -1.96 16 31 C -0.04 -0.42 7.47 -38.86 -0.29 -0.71 16 32 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 34 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16 35 H 0.09 2.03 6.02 -51.93 -0.31 1.71 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 38 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.09 0.98 4.83 -51.93 -0.25 0.73 16 43 H 0.13 1.65 8.03 -52.48 -0.42 1.23 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.17 0.43 8.06 -52.49 -0.42 0.00 16 46 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.13 1.38 6.42 -52.48 -0.34 1.05 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -34.57 365.16 -11.27 -45.84 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.60 Total: 2.22 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.70 Total: -2.81 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.51 Total: -57.43 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.57 -11.27 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049692018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.722 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds