Wall clock time and date at job start Tue Mar 31 2020 22:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99676 * 2 1 4 4 H 1.48496 * 109.47364 * 270.00582 * 3 2 1 5 5 H 1.48508 * 109.46876 * 30.00665 * 3 2 1 6 6 H 1.48505 * 109.46976 * 150.00179 * 3 2 1 7 7 C 1.38810 * 120.00594 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00120 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.46889 * 125.58227 * 0.02562 * 9 7 2 11 11 C 1.54057 * 107.70532 * 177.00644 * 10 9 7 12 12 C 1.54568 * 103.67301 * 342.84828 * 11 10 9 13 13 H 1.08996 * 108.79247 * 273.79445 * 12 11 10 14 14 C 1.47656 * 125.58308 * 180.02562 * 9 7 2 15 15 H 1.09004 * 110.56816 * 322.60833 * 14 9 7 16 16 C 1.52928 * 107.98911 * 83.63043 * 14 9 7 17 17 C 1.52950 * 109.79052 * 171.84308 * 16 14 9 18 18 C 1.53047 * 108.49547 * 294.01149 * 17 16 14 19 19 N 1.44190 * 111.47819 * 153.28172 * 12 11 10 20 20 C 1.34783 * 117.76065 * 93.66386 * 19 12 11 21 21 O 1.21579 * 119.99481 * 5.47968 * 20 19 12 22 22 C 1.47648 * 120.00298 * 185.47350 * 20 19 12 23 23 C 1.40209 * 119.97153 * 39.75009 * 22 20 19 24 24 C 1.36323 * 120.66452 * 180.31785 * 23 22 20 25 25 C 1.39367 * 120.23549 * 359.65427 * 24 23 22 26 26 N 1.37398 * 133.24065 * 180.02562 * 25 24 23 27 27 H 0.96999 * 125.01541 * 359.97438 * 26 25 24 28 28 C 1.36867 * 109.97936 * 179.97438 * 26 25 24 29 29 C 1.34190 * 109.95781 * 359.97438 * 28 26 25 30 30 C 1.40868 * 119.64376 * 0.02562 * 25 24 23 31 31 C 1.39147 * 119.97465 * 219.41157 * 22 20 19 32 32 H 0.96999 * 120.00296 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.81344 * 296.55578 * 10 9 7 34 34 H 1.09004 * 109.80777 * 57.46528 * 10 9 7 35 35 H 1.09003 * 110.57107 * 101.43520 * 11 10 9 36 36 H 1.09008 * 110.57387 * 224.15737 * 11 10 9 37 37 H 1.08992 * 109.41805 * 51.75069 * 16 14 9 38 38 H 1.09002 * 109.41505 * 291.93890 * 16 14 9 39 39 H 1.08999 * 109.63276 * 174.30398 * 17 16 14 40 40 H 1.09002 * 109.79265 * 53.80984 * 17 16 14 41 41 H 1.09003 * 109.45732 * 293.77537 * 18 17 16 42 42 H 1.08997 * 109.45825 * 173.82488 * 18 17 16 43 43 H 1.07991 * 119.66864 * 359.97355 * 23 22 20 44 44 H 1.07998 * 119.88137 * 179.63695 * 24 23 22 45 45 H 1.07998 * 125.01928 * 180.02562 * 28 26 25 46 46 H 1.07997 * 126.54335 * 180.02562 * 29 28 26 47 47 H 1.08002 * 120.30265 * 0.02562 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1362 -2.5310 -0.0005 11 6 -0.4598 -4.0352 -0.0772 12 6 0.8642 -4.6697 -0.5605 13 1 0.8921 -4.6372 -1.6496 14 6 1.9362 -3.7325 -0.0005 15 1 2.8328 -3.7460 -0.6203 16 6 2.2784 -4.0958 1.4450 17 6 2.7252 -5.5567 1.5199 18 6 1.5329 -6.4479 1.1641 19 7 0.9844 -6.0383 -0.1229 20 6 0.5655 -7.0052 -0.9633 21 8 0.1983 -6.7175 -2.0861 22 6 0.5525 -8.4136 -0.5206 23 6 0.1505 -8.7342 0.7838 24 6 0.1393 -10.0292 1.2095 25 6 0.5223 -11.0547 0.3470 26 7 0.6107 -12.4187 0.4871 27 1 0.3953 -12.9103 1.2951 28 6 1.0476 -12.9815 -0.6815 29 6 1.2533 -12.0262 -1.6011 30 6 0.9219 -10.7463 -0.9681 31 6 0.9326 -9.4225 -1.4003 32 1 -0.4850 0.8400 0.0004 33 1 -0.5485 -2.1106 0.9167 34 1 -0.5575 -2.0180 -0.8651 35 1 -0.7330 -4.4188 0.9059 36 1 -1.2598 -4.2189 -0.7946 37 1 1.3986 -3.9534 2.0724 38 1 3.0833 -3.4520 1.7996 39 1 3.0642 -5.7846 2.5305 40 1 3.5366 -5.7312 0.8133 41 1 0.7660 -6.3523 1.9327 42 1 1.8603 -7.4859 1.1054 43 1 -0.1481 -7.9467 1.4599 44 1 -0.1671 -10.2612 2.2188 45 1 1.2030 -14.0384 -0.8402 46 1 1.5978 -12.1723 -2.6142 47 1 1.2382 -9.1806 -2.4076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049692020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:20 Heat of formation + Delta-G solvation = 64.638970 kcal Electronic energy + Delta-G solvation = -29581.694953 eV Core-core repulsion = 25730.730138 eV Total energy + Delta-G solvation = -3850.964815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56491 -40.40166 -38.06696 -36.66145 -35.28872 -32.53636 -32.29899 -32.20386 -30.08280 -29.15065 -28.80974 -28.12295 -24.99445 -24.36769 -23.38681 -22.41352 -21.80659 -21.14466 -20.31140 -19.80409 -18.42590 -18.04189 -17.33822 -16.85333 -16.08564 -15.90903 -15.10143 -14.74011 -14.71743 -14.38309 -14.29488 -14.14105 -13.97427 -13.67667 -13.45516 -13.26760 -13.08625 -12.80760 -12.67430 -12.30466 -12.05250 -11.91053 -11.68222 -11.34771 -11.15236 -10.96999 -10.86360 -10.70494 -10.62223 -10.41373 -10.07919 -10.06328 -9.99135 -9.61644 -9.52756 -9.49133 -8.56629 -8.43221 -8.22915 -8.00491 -6.82430 -5.67769 -3.02320 0.86901 1.10300 2.43583 2.79992 2.92984 3.24560 3.42624 3.47479 3.49194 3.76297 4.42651 4.51488 4.52011 4.63248 4.79486 5.01198 5.04846 5.16790 5.22447 5.30341 5.33487 5.45197 5.47498 5.53299 5.63072 5.66538 5.69415 5.76272 5.84767 5.95446 6.06646 6.10202 6.15252 6.27205 6.29091 6.36163 6.37713 6.44707 6.45275 6.63090 6.65439 6.81149 6.83386 7.04789 7.16588 7.17723 7.60768 7.62347 7.70117 7.87312 8.28515 8.43635 9.24573 9.84420 10.49683 11.43081 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.002495 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.026954 B =11220.064232 C =11435.951404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.179 3.821 11 C -0.151 4.151 12 C 0.136 3.864 13 H 0.094 0.906 14 C 0.162 3.838 15 H 0.054 0.946 16 C -0.130 4.130 17 C -0.133 4.133 18 C 0.106 3.894 19 N -0.582 5.582 20 C 0.553 3.447 21 O -0.537 6.537 22 C -0.153 4.153 23 C -0.067 4.067 24 C -0.138 4.138 25 C 0.111 3.889 26 N -0.595 5.595 27 H 0.416 0.584 28 C 0.042 3.958 29 C -0.193 4.193 30 C -0.121 4.121 31 C -0.010 4.010 32 H 0.252 0.748 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.136 0.864 44 H 0.124 0.876 45 H 0.171 0.829 46 H 0.149 0.851 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -26.963 4.459 27.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.190 4.190 12 C 0.031 3.969 13 H 0.112 0.888 14 C 0.053 3.947 15 H 0.072 0.928 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.016 4.016 19 N -0.313 5.313 20 C 0.342 3.658 21 O -0.415 6.415 22 C -0.157 4.157 23 C -0.087 4.087 24 C -0.158 4.158 25 C 0.003 3.997 26 N -0.197 5.197 27 H 0.252 0.748 28 C -0.083 4.083 29 C -0.218 4.218 30 C -0.126 4.126 31 C -0.029 4.029 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.154 0.846 44 H 0.142 0.858 45 H 0.188 0.812 46 H 0.166 0.834 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.731 -26.587 3.961 26.936 hybrid contribution 0.275 0.610 0.556 0.870 sum 2.006 -25.977 4.517 26.443 Atomic orbital electron populations 1.69974 1.04858 1.25008 1.56932 1.24803 0.95705 0.97626 1.02243 0.86123 0.78530 0.83543 0.77569 1.21606 1.21743 1.20737 1.19014 0.90411 0.82153 1.43822 0.90423 1.44512 1.01524 0.99258 1.86710 1.21055 0.84273 0.88016 1.01214 1.23096 0.96550 0.99397 0.99981 1.21156 0.96551 0.78925 1.00249 0.88803 1.20836 0.94015 0.86116 0.93717 0.92775 1.22118 1.01444 0.93441 1.00030 1.21867 0.97165 0.96774 1.01337 1.21786 0.96001 0.98998 0.84845 1.46966 1.61068 1.06200 1.17050 1.18396 0.77703 0.85020 0.84718 1.90775 1.47929 1.83237 1.19582 1.19625 1.07708 0.93251 0.95114 1.20874 0.97221 0.95960 0.94621 1.19650 1.06299 0.90748 0.99137 1.18411 1.01623 0.83815 0.95867 1.41775 1.59003 1.05133 1.13812 0.74783 1.21813 1.02224 0.98828 0.85427 1.21763 1.09797 0.90145 1.00101 1.19119 1.06273 0.93505 0.93666 1.20591 0.94216 0.89448 0.98683 0.93757 0.94200 0.92969 0.92636 0.91970 0.91987 0.91907 0.91186 0.91700 0.92000 0.89692 0.84619 0.85773 0.81208 0.83376 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.29 55.49 0.57 -26.61 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.10 2.94 -163.87 -0.48 -15.58 16 10 C 0.18 4.45 5.39 -3.28 -0.02 4.43 16 11 C -0.15 -3.06 6.46 -25.36 -0.16 -3.22 16 12 C 0.14 2.64 2.81 -68.34 -0.19 2.44 16 13 H 0.09 2.04 7.00 -51.93 -0.36 1.68 16 14 C 0.16 3.35 3.27 -67.33 -0.22 3.13 16 15 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 16 C -0.13 -2.29 5.31 -26.79 -0.14 -2.44 16 17 C -0.13 -1.77 6.10 -26.73 -0.16 -1.93 16 18 C 0.11 1.35 4.66 -4.41 -0.02 1.33 16 19 N -0.58 -9.38 2.79 -168.55 -0.47 -9.85 16 20 C 0.55 9.26 7.22 -12.42 -0.09 9.17 16 21 O -0.54 -10.98 16.15 5.30 0.09 -10.89 16 22 C -0.15 -2.06 4.91 -104.98 -0.52 -2.57 16 23 C -0.07 -0.73 7.42 -39.53 -0.29 -1.02 16 24 C -0.14 -1.27 10.00 -39.85 -0.40 -1.67 16 25 C 0.11 1.08 7.27 -83.96 -0.61 0.47 16 26 N -0.59 -3.96 6.05 -10.61 -0.06 -4.03 16 27 H 0.42 1.45 8.96 -40.82 -0.37 1.08 16 28 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 29 C -0.19 -1.68 11.09 -37.65 -0.42 -2.10 16 30 C -0.12 -1.36 6.36 -105.16 -0.67 -2.02 16 31 C -0.01 -0.13 9.68 -38.86 -0.38 -0.50 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 34 H 0.05 1.45 7.25 -51.93 -0.38 1.07 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.72 7.23 -51.93 -0.38 0.34 16 42 H 0.08 0.94 5.35 -51.93 -0.28 0.66 16 43 H 0.14 1.33 5.95 -52.49 -0.31 1.02 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.13 1.68 8.05 -52.49 -0.42 1.26 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -33.96 369.19 -11.21 -45.17 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.66 Total: 2.16 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -4.74 Total: -3.12 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.44 Total: -56.07 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.96 -11.21 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049692020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.811 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds