Wall clock time and date at job start Tue Mar 31 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99702 * 2 1 4 4 H 1.48508 * 109.46637 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47174 * 299.99748 * 3 2 1 6 6 H 1.48493 * 109.47272 * 59.99983 * 3 2 1 7 7 C 1.38810 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99858 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.47754 * 126.22344 * 359.60198 * 9 7 2 11 11 C 1.55468 * 106.85234 * 174.02818 * 10 9 7 12 12 C 1.53434 * 101.67127 * 337.88361 * 11 10 9 13 13 H 1.08999 * 111.75417 * 281.76226 * 12 11 10 14 14 C 1.45020 * 126.56170 * 180.02562 * 9 7 2 15 15 H 1.09004 * 108.70759 * 96.49084 * 14 9 7 16 16 C 1.51082 * 119.18690 * 331.20851 * 14 9 7 17 17 C 1.53875 * 107.40205 * 176.70057 * 16 14 9 18 18 C 1.52873 * 111.44103 * 56.88567 * 17 16 14 19 19 N 1.45726 * 116.37621 * 152.72717 * 12 11 10 20 20 C 1.34772 * 122.22951 * 9.90598 * 19 12 11 21 21 O 1.21575 * 120.00352 * 354.34465 * 20 19 12 22 22 C 1.47659 * 120.00098 * 174.34496 * 20 19 12 23 23 C 1.40208 * 119.97370 * 141.41042 * 22 20 19 24 24 C 1.36318 * 120.66594 * 179.75744 * 23 22 20 25 25 C 1.39362 * 120.24178 * 0.52074 * 24 23 22 26 26 N 1.37394 * 133.25118 * 179.73353 * 25 24 23 27 27 H 0.97000 * 125.01132 * 0.02562 * 26 25 24 28 28 C 1.36866 * 109.98292 * 180.02562 * 26 25 24 29 29 C 1.34196 * 109.95478 * 0.02562 * 28 26 25 30 30 C 1.40876 * 119.63580 * 359.74401 * 25 24 23 31 31 C 1.39151 * 119.97257 * 321.69315 * 22 20 19 32 32 H 0.97007 * 120.00728 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.61406 * 54.91264 * 10 9 7 34 34 H 1.08995 * 110.45519 * 293.61391 * 10 9 7 35 35 H 1.08991 * 110.98821 * 219.78680 * 11 10 9 36 36 H 1.09006 * 110.98447 * 95.97866 * 11 10 9 37 37 H 1.09003 * 109.88107 * 296.19090 * 16 14 9 38 38 H 1.08993 * 109.88467 * 57.20162 * 16 14 9 39 39 H 1.08998 * 109.06696 * 177.49409 * 17 16 14 40 40 H 1.09000 * 109.06346 * 296.43164 * 17 16 14 41 41 H 1.09005 * 109.14374 * 191.10054 * 18 17 16 42 42 H 1.09000 * 109.09303 * 71.91186 * 18 17 16 43 43 H 1.08003 * 119.66680 * 0.02562 * 23 22 20 44 44 H 1.08005 * 119.87854 * 180.26080 * 24 23 22 45 45 H 1.08000 * 125.02261 * 180.02562 * 28 26 25 46 46 H 1.08006 * 126.54172 * 180.02562 * 29 28 26 47 47 H 1.07996 * 120.30381 * 359.95140 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1433 -2.5483 0.0083 11 6 -0.4318 -4.0677 -0.1498 12 6 0.8688 -4.5652 -0.7943 13 1 0.9043 -4.3379 -1.8598 14 6 1.9024 -3.7186 0.0016 15 1 1.9336 -4.0853 1.0276 16 6 3.2565 -3.9350 -0.6325 17 6 3.6403 -5.4079 -0.4067 18 6 2.5822 -6.3544 -0.9740 19 7 1.2251 -5.9557 -0.5433 20 6 0.3745 -6.8210 0.0433 21 8 -0.6915 -6.4272 0.4752 22 6 0.7374 -8.2475 0.1615 23 6 0.4058 -8.9607 1.3222 24 6 0.7295 -10.2792 1.4443 25 6 1.4064 -10.9338 0.4169 26 7 1.8594 -12.2213 0.2586 27 1 1.7593 -12.9308 0.9124 28 6 2.4728 -12.3551 -0.9575 29 6 2.4415 -11.1869 -1.6172 30 6 1.7500 -10.2268 -0.7521 31 6 1.4133 -8.8812 -0.8766 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5758 -1.9985 -0.8277 34 1 -0.5610 -2.1860 0.9475 35 1 -1.2835 -4.2369 -0.8085 36 1 -0.5913 -4.5379 0.8206 37 1 3.2033 -3.7255 -1.7009 38 1 3.9939 -3.2837 -0.1635 39 1 4.5954 -5.6057 -0.8933 40 1 3.7429 -5.5891 0.6632 41 1 2.7852 -7.3673 -0.6260 42 1 2.6320 -6.3335 -2.0626 43 1 -0.1152 -8.4615 2.1259 44 1 0.4643 -10.8175 2.3423 45 1 2.9164 -13.2661 -1.3311 46 1 2.8473 -10.9917 -2.5990 47 1 1.6740 -8.3347 -1.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049692021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:25 Heat of formation + Delta-G solvation = 73.852451 kcal Electronic energy + Delta-G solvation = -29749.181408 eV Core-core repulsion = 25898.616119 eV Total energy + Delta-G solvation = -3850.565289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54343 -40.26206 -37.98142 -36.53044 -35.37148 -32.61482 -32.43883 -31.93431 -30.04881 -29.06978 -28.63392 -28.05662 -25.00431 -24.39789 -23.23663 -22.34938 -21.43083 -21.18095 -20.56314 -19.62412 -18.90035 -18.28629 -16.90975 -16.53637 -16.05311 -15.51841 -15.15974 -14.73246 -14.66048 -14.50253 -14.40827 -14.08154 -13.92384 -13.68389 -13.44989 -13.15990 -12.93065 -12.84272 -12.55451 -12.38705 -12.12467 -11.78832 -11.72597 -11.45768 -11.15864 -10.99801 -10.82179 -10.62421 -10.46580 -10.35905 -10.04339 -9.97522 -9.88803 -9.76688 -9.56717 -8.93223 -8.52843 -8.42406 -8.13352 -7.98160 -6.76259 -5.63963 -2.98510 0.83820 1.15820 2.44282 2.81062 2.99287 3.24811 3.43633 3.48645 3.51355 3.79259 4.40276 4.51724 4.54802 4.66485 4.84552 4.94105 5.06214 5.15364 5.20332 5.30358 5.37211 5.43268 5.50411 5.52260 5.66246 5.67430 5.73178 5.85434 5.86431 5.95127 6.08515 6.11485 6.17362 6.29129 6.35738 6.38493 6.40407 6.44487 6.48452 6.65161 6.80477 6.83140 6.89837 6.99030 7.18097 7.28922 7.66062 7.73912 7.80797 7.92481 8.32796 8.52341 9.26478 9.89877 10.57817 11.47409 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.002693 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.325835 B =10393.864077 C =11012.879286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.134 4.134 12 C 0.117 3.883 13 H 0.080 0.920 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.101 3.899 19 N -0.594 5.594 20 C 0.563 3.437 21 O -0.529 6.529 22 C -0.148 4.148 23 C -0.046 4.046 24 C -0.137 4.137 25 C 0.111 3.889 26 N -0.595 5.595 27 H 0.415 0.585 28 C 0.044 3.956 29 C -0.195 4.195 30 C -0.121 4.121 31 C -0.036 4.036 32 H 0.251 0.749 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.135 0.865 44 H 0.124 0.876 45 H 0.170 0.830 46 H 0.148 0.852 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 -26.780 -2.046 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.172 4.172 12 C 0.013 3.987 13 H 0.098 0.902 14 C 0.050 3.950 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.326 5.326 20 C 0.352 3.648 21 O -0.406 6.406 22 C -0.153 4.153 23 C -0.066 4.066 24 C -0.158 4.158 25 C 0.003 3.997 26 N -0.198 5.198 27 H 0.252 0.748 28 C -0.082 4.082 29 C -0.220 4.220 30 C -0.125 4.125 31 C -0.055 4.055 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.153 0.847 44 H 0.142 0.858 45 H 0.188 0.812 46 H 0.166 0.834 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.920 -26.435 -1.754 27.147 hybrid contribution 0.528 0.497 0.226 0.759 sum 6.449 -25.939 -1.528 26.772 Atomic orbital electron populations 1.69971 1.04856 1.24842 1.57036 1.24807 0.95669 0.97603 1.02409 0.86080 0.78676 0.84021 0.77194 1.20568 1.21822 1.21842 1.19041 0.90374 0.82280 1.43579 0.90367 1.43958 1.01921 0.99391 1.86474 1.21639 0.83607 0.88905 1.01005 1.23045 0.94443 0.98006 1.01741 1.22445 0.98885 0.78249 0.99169 0.90205 1.20766 0.91455 0.87120 0.95708 0.96428 1.21422 0.98489 0.94195 1.01259 1.21934 0.97618 0.95673 1.01566 1.22064 0.81692 0.99172 0.99184 1.47892 1.14112 1.11055 1.59580 1.18167 0.83960 0.84929 0.77772 1.90774 1.23784 1.78175 1.47911 1.19776 1.04394 0.94454 0.96654 1.20564 0.96566 0.92695 0.96771 1.19670 1.03432 0.94728 0.97993 1.18412 0.99682 0.84885 0.96754 1.41776 1.50888 1.09787 1.17368 0.74805 1.21818 1.00397 1.00007 0.85950 1.21746 1.07440 0.91973 1.00870 1.19110 1.04477 0.93849 0.95080 1.20855 0.94195 0.92352 0.98109 0.93825 0.92497 0.94468 0.92274 0.89442 0.91782 0.91561 0.90944 0.91867 0.89371 0.91602 0.84739 0.85812 0.81244 0.83381 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.62 10.41 55.49 0.58 -27.04 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.22 -6.27 9.94 -15.06 -0.15 -6.42 16 8 H 0.08 2.10 7.32 -52.48 -0.38 1.71 16 9 N -0.59 -15.48 3.32 -163.78 -0.54 -16.02 16 10 C 0.17 4.48 5.45 -2.04 -0.01 4.47 16 11 C -0.13 -2.94 5.11 -25.20 -0.13 -3.07 16 12 C 0.12 2.29 3.33 -66.78 -0.22 2.07 16 13 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 14 C 0.16 3.40 2.60 -68.35 -0.18 3.22 16 15 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 16 C -0.12 -2.01 5.44 -27.24 -0.15 -2.16 16 17 C -0.13 -1.72 5.94 -26.34 -0.16 -1.87 16 18 C 0.10 1.28 4.84 -3.36 -0.02 1.27 16 19 N -0.59 -9.74 2.91 -165.05 -0.48 -10.22 16 20 C 0.56 9.59 7.35 -12.42 -0.09 9.49 16 21 O -0.53 -10.76 13.62 5.30 0.07 -10.69 16 22 C -0.15 -2.04 5.25 -104.97 -0.55 -2.59 16 23 C -0.05 -0.57 9.54 -39.53 -0.38 -0.94 16 24 C -0.14 -1.38 10.00 -39.85 -0.40 -1.78 16 25 C 0.11 1.10 7.27 -83.96 -0.61 0.49 16 26 N -0.60 -4.01 6.05 -10.61 -0.06 -4.08 16 27 H 0.42 1.52 8.96 -40.82 -0.37 1.16 16 28 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 29 C -0.20 -1.60 11.09 -37.65 -0.42 -2.01 16 30 C -0.12 -1.29 6.36 -105.16 -0.67 -1.96 16 31 C -0.04 -0.42 7.47 -38.86 -0.29 -0.71 16 32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.06 1.60 7.11 -51.92 -0.37 1.23 16 34 H 0.04 1.06 7.82 -51.93 -0.41 0.65 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.09 2.02 6.02 -51.93 -0.31 1.71 16 37 H 0.06 1.12 8.12 -51.93 -0.42 0.69 16 38 H 0.07 1.21 7.73 -51.93 -0.40 0.81 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.98 4.84 -51.93 -0.25 0.73 16 42 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.13 1.65 8.04 -52.48 -0.42 1.23 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 46 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 47 H 0.13 1.39 6.40 -52.49 -0.34 1.05 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -34.57 365.01 -11.27 -45.84 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.60 Total: 2.16 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -4.71 Total: -2.80 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.51 Total: -57.36 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.57 -11.27 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049692021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.694 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds