Wall clock time and date at job start Tue Mar 31 2020 22:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99702 * 2 1 4 4 H 1.48508 * 109.46637 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47174 * 299.99748 * 3 2 1 6 6 H 1.48493 * 109.47272 * 59.99983 * 3 2 1 7 7 C 1.38810 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99858 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.47754 * 126.22344 * 359.60198 * 9 7 2 11 11 C 1.55468 * 106.85234 * 174.02818 * 10 9 7 12 12 C 1.53434 * 101.67127 * 337.88361 * 11 10 9 13 13 H 1.08999 * 111.75417 * 281.76226 * 12 11 10 14 14 C 1.45020 * 126.56170 * 180.02562 * 9 7 2 15 15 H 1.09004 * 108.70759 * 96.49084 * 14 9 7 16 16 C 1.51082 * 119.18690 * 331.20851 * 14 9 7 17 17 C 1.53875 * 107.40205 * 176.70057 * 16 14 9 18 18 C 1.52873 * 111.44103 * 56.88567 * 17 16 14 19 19 N 1.45726 * 116.37621 * 152.72717 * 12 11 10 20 20 C 1.34772 * 122.22951 * 9.90598 * 19 12 11 21 21 O 1.21575 * 120.00352 * 354.34465 * 20 19 12 22 22 C 1.47659 * 120.00098 * 174.34496 * 20 19 12 23 23 C 1.40208 * 119.97370 * 141.41042 * 22 20 19 24 24 C 1.36318 * 120.66594 * 179.75744 * 23 22 20 25 25 C 1.39362 * 120.24178 * 0.52074 * 24 23 22 26 26 N 1.37394 * 133.25118 * 179.73353 * 25 24 23 27 27 H 0.97000 * 125.01132 * 0.02562 * 26 25 24 28 28 C 1.36866 * 109.98292 * 180.02562 * 26 25 24 29 29 C 1.34196 * 109.95478 * 0.02562 * 28 26 25 30 30 C 1.40876 * 119.63580 * 359.74401 * 25 24 23 31 31 C 1.39151 * 119.97257 * 321.69315 * 22 20 19 32 32 H 0.97007 * 120.00728 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.61406 * 54.91264 * 10 9 7 34 34 H 1.08995 * 110.45519 * 293.61391 * 10 9 7 35 35 H 1.08991 * 110.98821 * 219.78680 * 11 10 9 36 36 H 1.09006 * 110.98447 * 95.97866 * 11 10 9 37 37 H 1.09003 * 109.88107 * 296.19090 * 16 14 9 38 38 H 1.08993 * 109.88467 * 57.20162 * 16 14 9 39 39 H 1.08998 * 109.06696 * 177.49409 * 17 16 14 40 40 H 1.09000 * 109.06346 * 296.43164 * 17 16 14 41 41 H 1.09005 * 109.14374 * 191.10054 * 18 17 16 42 42 H 1.09000 * 109.09303 * 71.91186 * 18 17 16 43 43 H 1.08003 * 119.66680 * 0.02562 * 23 22 20 44 44 H 1.08005 * 119.87854 * 180.26080 * 24 23 22 45 45 H 1.08000 * 125.02261 * 180.02562 * 28 26 25 46 46 H 1.08006 * 126.54172 * 180.02562 * 29 28 26 47 47 H 1.07996 * 120.30381 * 359.95140 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1433 -2.5483 0.0083 11 6 -0.4318 -4.0677 -0.1498 12 6 0.8688 -4.5652 -0.7943 13 1 0.9043 -4.3379 -1.8598 14 6 1.9024 -3.7186 0.0016 15 1 1.9336 -4.0853 1.0276 16 6 3.2565 -3.9350 -0.6325 17 6 3.6403 -5.4079 -0.4067 18 6 2.5822 -6.3544 -0.9740 19 7 1.2251 -5.9557 -0.5433 20 6 0.3745 -6.8210 0.0433 21 8 -0.6915 -6.4272 0.4752 22 6 0.7374 -8.2475 0.1615 23 6 0.4058 -8.9607 1.3222 24 6 0.7295 -10.2792 1.4443 25 6 1.4064 -10.9338 0.4169 26 7 1.8594 -12.2213 0.2586 27 1 1.7593 -12.9308 0.9124 28 6 2.4728 -12.3551 -0.9575 29 6 2.4415 -11.1869 -1.6172 30 6 1.7500 -10.2268 -0.7521 31 6 1.4133 -8.8812 -0.8766 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5758 -1.9985 -0.8277 34 1 -0.5610 -2.1860 0.9475 35 1 -1.2835 -4.2369 -0.8085 36 1 -0.5913 -4.5379 0.8206 37 1 3.2033 -3.7255 -1.7009 38 1 3.9939 -3.2837 -0.1635 39 1 4.5954 -5.6057 -0.8933 40 1 3.7429 -5.5891 0.6632 41 1 2.7852 -7.3673 -0.6260 42 1 2.6320 -6.3335 -2.0626 43 1 -0.1152 -8.4615 2.1259 44 1 0.4643 -10.8175 2.3423 45 1 2.9164 -13.2661 -1.3311 46 1 2.8473 -10.9917 -2.5990 47 1 1.6740 -8.3347 -1.7709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049692021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:24 Heat of formation + Delta-G solvation = 52.413437 kcal Electronic energy + Delta-G solvation = -29750.111073 eV Core-core repulsion = 25898.616119 eV Total energy + Delta-G solvation = -3851.494954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.29960 -41.57995 -39.42408 -37.52530 -36.92607 -34.27475 -33.92856 -32.94143 -31.32586 -30.22502 -29.84241 -29.47052 -26.50175 -26.23395 -24.18263 -23.41549 -22.82080 -22.27130 -21.65825 -21.36551 -20.10852 -18.99365 -18.60503 -17.73580 -17.19845 -16.92923 -16.74274 -16.34231 -15.88134 -15.63450 -15.43844 -15.31026 -15.24501 -14.81371 -14.67181 -14.28887 -14.19162 -14.02472 -13.87520 -13.51605 -13.50864 -13.24085 -13.15164 -12.89363 -12.75259 -12.57318 -12.25317 -12.06933 -11.98274 -11.78857 -11.74912 -11.71527 -11.57375 -11.41497 -10.78202 -10.70557 -10.35277 -9.58368 -9.19090 -8.90996 -8.66265 -7.82986 -5.20884 0.02002 0.32533 1.45926 1.47828 1.58010 1.77644 1.88805 1.99352 2.28039 2.50969 2.89081 3.32922 3.35112 3.55741 3.74900 3.92846 3.95971 4.01649 4.07121 4.09067 4.24396 4.26448 4.33585 4.35477 4.43790 4.57232 4.59526 4.65524 4.72642 4.77705 4.80447 4.92736 4.98321 5.03976 5.09092 5.13357 5.15378 5.28119 5.34463 5.41654 5.48129 5.50309 5.60592 5.64101 5.67968 5.75171 5.80037 6.13496 6.19243 6.51437 6.73146 7.06686 7.20580 7.76469 8.45900 9.28432 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.002693 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.325835 B =10393.864077 C =11012.879286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.090 0.910 9 N -0.611 5.611 10 C 0.185 3.815 11 C -0.118 4.118 12 C 0.132 3.868 13 H 0.085 0.915 14 C 0.154 3.846 15 H -0.005 1.005 16 C -0.109 4.109 17 C -0.119 4.119 18 C 0.098 3.902 19 N -0.594 5.594 20 C 0.558 3.442 21 O -0.576 6.576 22 C -0.169 4.169 23 C -0.070 4.070 24 C -0.127 4.127 25 C 0.101 3.899 26 N -0.583 5.583 27 H 0.432 0.568 28 C 0.065 3.935 29 C -0.218 4.218 30 C -0.136 4.136 31 C -0.033 4.033 32 H 0.246 0.754 33 H 0.028 0.972 34 H -0.003 1.003 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.149 0.851 45 H 0.213 0.787 46 H 0.166 0.834 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.859 -30.631 -3.487 32.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.059 3.941 11 C -0.157 4.157 12 C 0.027 3.973 13 H 0.103 0.897 14 C 0.045 3.955 15 H 0.013 0.987 16 C -0.148 4.148 17 C -0.158 4.158 18 C -0.023 4.023 19 N -0.326 5.326 20 C 0.349 3.651 21 O -0.457 6.457 22 C -0.173 4.173 23 C -0.090 4.090 24 C -0.148 4.148 25 C -0.009 4.009 26 N -0.187 5.187 27 H 0.271 0.729 28 C -0.061 4.061 29 C -0.242 4.242 30 C -0.141 4.141 31 C -0.052 4.052 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.166 0.834 45 H 0.230 0.770 46 H 0.183 0.817 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.303 -30.361 -3.196 31.914 hybrid contribution -0.482 1.493 0.708 1.721 sum 8.821 -28.868 -2.488 30.288 Atomic orbital electron populations 1.70205 1.06561 1.25189 1.58541 1.25730 0.96569 1.01274 1.02813 0.84970 0.78346 0.79246 0.76539 1.18465 1.21826 1.22373 1.19471 0.91075 0.83118 1.42385 0.89253 1.44226 1.02072 1.00954 1.86301 1.21321 0.84018 0.91087 0.97646 1.22780 0.96255 0.95105 1.01544 1.22059 0.96263 0.80353 0.98669 0.89688 1.20936 0.94458 0.84906 0.95163 0.98745 1.21396 0.95335 0.97245 1.00817 1.21920 0.99569 0.92441 1.01867 1.22387 0.79113 0.99972 1.00791 1.47958 1.15762 1.09323 1.59528 1.18779 0.83279 0.86413 0.76589 1.90735 1.25789 1.79280 1.49875 1.19492 1.07082 0.92347 0.98412 1.20538 0.98029 0.93915 0.96516 1.19819 1.02256 0.93761 0.98945 1.18531 0.99654 0.86295 0.96442 1.41895 1.49705 1.09029 1.18069 0.72870 1.22531 0.97998 1.00854 0.84703 1.22060 1.08310 0.91970 1.01848 1.19452 1.04702 0.93784 0.96177 1.20893 0.93578 0.93090 0.97595 0.94480 0.95351 0.98525 0.91917 0.90772 0.91304 0.92436 0.86821 0.92498 0.87175 0.88943 0.86065 0.83378 0.77002 0.81691 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.36 10.41 21.65 0.23 -60.14 16 2 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 3 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 7 C -0.23 -13.29 9.94 84.03 0.84 -12.45 16 8 H 0.09 4.81 7.32 -2.91 -0.02 4.79 16 9 N -0.61 -33.33 3.32 -672.08 -2.23 -35.56 16 10 C 0.18 10.29 5.45 86.99 0.47 10.76 16 11 C -0.12 -5.56 5.11 31.59 0.16 -5.39 16 12 C 0.13 5.29 3.33 46.15 0.15 5.45 16 13 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 14 C 0.15 6.73 2.60 45.51 0.12 6.85 16 15 H 0.00 -0.24 8.06 -2.38 -0.02 -0.25 16 16 C -0.11 -3.70 5.44 30.26 0.16 -3.54 16 17 C -0.12 -2.85 5.94 30.85 0.18 -2.67 16 18 C 0.10 2.23 4.84 86.08 0.42 2.65 16 19 N -0.59 -19.40 2.91 -794.37 -2.32 -21.71 16 20 C 0.56 19.55 7.35 86.73 0.64 20.18 16 21 O -0.58 -24.90 13.62 -3.95 -0.05 -24.95 16 22 C -0.17 -4.62 5.25 -20.09 -0.11 -4.72 16 23 C -0.07 -1.74 9.54 22.30 0.21 -1.53 16 24 C -0.13 -2.36 10.00 22.09 0.22 -2.14 16 25 C 0.10 1.70 7.27 39.19 0.28 1.98 16 26 N -0.58 -5.33 6.05 -187.48 -1.13 -6.47 16 27 H 0.43 1.20 8.96 -92.71 -0.83 0.37 16 28 C 0.06 0.47 11.81 82.98 0.98 1.45 16 29 C -0.22 -2.64 11.09 23.52 0.26 -2.38 16 30 C -0.14 -2.52 6.36 -20.21 -0.13 -2.65 16 31 C -0.03 -0.70 7.47 22.74 0.17 -0.53 16 32 H 0.25 15.06 8.31 -92.70 -0.77 14.28 16 33 H 0.03 1.71 7.11 -2.38 -0.02 1.70 16 34 H 0.00 -0.22 7.82 -2.39 -0.02 -0.24 16 35 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 3.70 6.02 -2.38 -0.01 3.69 16 37 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 38 H 0.06 2.04 7.73 -2.39 -0.02 2.02 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 2.11 4.84 -2.38 -0.01 2.10 16 42 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 43 H 0.12 3.21 8.04 -2.91 -0.02 3.19 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.21 -0.33 8.06 -2.91 -0.02 -0.35 16 46 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.14 2.63 6.40 -2.91 -0.02 2.61 16 Total: -1.00 -81.60 365.01 2.19 -79.40 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.17 Total: 12.84 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 5.51 Total: 7.57 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -5.46 Total: -123.88 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -81.60 2.19 -79.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049692021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.818 kcal (2) G-P(sol) polarization free energy of solvation -81.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds