Wall clock time and date at job start Tue Mar 31 2020 23:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48499 * 109.47405 * 270.00081 * 3 2 1 5 5 H 1.48503 * 109.47284 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.47146 * 149.99761 * 3 2 1 7 7 C 1.38818 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99914 * 359.72672 * 7 2 1 10 10 C 1.46923 * 125.37531 * 179.71863 * 9 7 2 11 11 C 1.54370 * 106.16132 * 162.01378 * 10 9 7 12 12 H 1.09001 * 109.50457 * 271.28930 * 11 10 9 13 13 C 1.50705 * 109.94999 * 151.13945 * 11 10 9 14 14 C 1.51337 * 113.53553 * 289.97037 * 13 11 10 15 15 C 1.51628 * 111.98402 * 304.62903 * 14 13 11 16 16 N 1.44223 * 112.79494 * 42.20138 * 15 14 13 17 17 C 1.34779 * 116.39974 * 154.57145 * 16 15 14 18 18 O 1.21671 * 119.99997 * 175.45259 * 17 16 15 19 19 C 1.46913 * 119.99908 * 355.45781 * 17 16 15 20 20 C 1.36375 * 126.76800 * 41.99913 * 19 17 16 21 21 N 1.35469 * 109.76789 * 179.86493 * 20 19 17 22 22 H 0.96998 * 124.78724 * 180.20276 * 21 20 19 23 23 C 1.37963 * 110.42860 * 0.41945 * 21 20 19 24 24 C 1.39124 * 133.19216 * 179.76127 * 23 21 20 25 25 C 1.37764 * 119.92973 * 180.02562 * 24 23 21 26 26 C 1.38749 * 120.63713 * 359.95596 * 25 24 23 27 27 C 1.37760 * 120.29926 * 0.02562 * 26 25 24 28 28 C 1.39274 * 119.67566 * 0.02562 * 27 26 25 29 29 C 1.44112 * 126.96190 * 335.76806 * 16 15 14 30 30 H 1.09005 * 108.48014 * 253.21731 * 29 16 15 31 31 C 1.46811 * 125.37644 * 0.02685 * 9 7 2 32 32 H 0.96998 * 119.99604 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.09851 * 281.33917 * 10 9 7 34 34 H 1.09002 * 110.10006 * 42.93766 * 10 9 7 35 35 H 1.09003 * 108.67548 * 51.01487 * 13 11 10 36 36 H 1.08994 * 108.66892 * 169.05563 * 13 11 10 37 37 H 1.08991 * 108.97907 * 65.27703 * 14 13 11 38 38 H 1.09006 * 108.97489 * 184.07037 * 14 13 11 39 39 H 1.08997 * 108.84471 * 163.53752 * 15 14 13 40 40 H 1.09004 * 108.84701 * 281.89432 * 15 14 13 41 41 H 1.08003 * 125.11595 * 0.02562 * 20 19 17 42 42 H 1.08002 * 120.03256 * 0.02562 * 24 23 21 43 43 H 1.08001 * 119.68001 * 179.97438 * 25 24 23 44 44 H 1.07994 * 119.85483 * 180.02562 * 26 25 24 45 45 H 1.08007 * 120.16122 * 180.02562 * 27 26 25 46 46 H 1.09009 * 109.84149 * 300.37232 * 31 9 7 47 47 H 1.08999 * 109.84793 * 61.38213 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0067 10 6 1.9377 -3.7237 0.0021 11 6 0.8386 -4.7017 0.4695 12 1 0.8612 -4.7821 1.5563 13 6 1.0692 -6.0622 -0.1364 14 6 0.8144 -6.1108 -1.6274 15 6 -0.5792 -5.6292 -1.9810 16 7 -0.9707 -4.4570 -1.2375 17 6 -1.8973 -3.6647 -1.8122 18 8 -2.3361 -2.7043 -1.2075 19 6 -2.3777 -3.9608 -3.1686 20 6 -2.6840 -5.1889 -3.6762 21 7 -3.0962 -5.0640 -4.9606 22 1 -3.3702 -5.8014 -5.5281 23 6 -3.0665 -3.7406 -5.3494 24 6 -3.3795 -3.0903 -6.5388 25 6 -3.2463 -1.7221 -6.6297 26 6 -2.8025 -0.9812 -5.5439 27 6 -2.4879 -1.6067 -4.3575 28 6 -2.6169 -2.9895 -4.2517 29 6 -0.4601 -4.0312 0.0410 30 1 -1.2232 -4.2165 0.7970 31 6 -0.1361 -2.5256 0.0126 32 1 -0.4849 0.8401 -0.0004 33 1 2.2683 -3.9808 -1.0043 34 1 2.7808 -3.7518 0.6924 35 1 2.1018 -6.3572 0.0508 36 1 0.4085 -6.7783 0.3521 37 1 1.5461 -5.4806 -2.1328 38 1 0.9318 -7.1376 -1.9737 39 1 -0.6144 -5.4054 -3.0472 40 1 -1.2919 -6.4257 -1.7669 41 1 -2.6116 -6.1206 -3.1348 42 1 -3.7265 -3.6575 -7.3898 43 1 -3.4900 -1.2215 -7.5551 44 1 -2.7031 0.0908 -5.6290 45 1 -2.1431 -1.0277 -3.5135 46 1 -0.5497 -2.0414 0.8973 47 1 -0.5539 -2.0741 -0.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050089563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:06 Heat of formation + Delta-G solvation = 74.839558 kcal Electronic energy + Delta-G solvation = -30667.263741 eV Core-core repulsion = 26816.741256 eV Total energy + Delta-G solvation = -3850.522485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48582 -40.10591 -37.39561 -36.85325 -35.32866 -33.10352 -32.14789 -31.71062 -29.75110 -29.43036 -28.76372 -26.97060 -25.56806 -24.21841 -22.99347 -22.49472 -22.01692 -21.55474 -20.37764 -18.94287 -18.07871 -17.61672 -16.74359 -16.40632 -15.94830 -15.73293 -15.35238 -15.11464 -14.56415 -14.31399 -14.16893 -13.92736 -13.82707 -13.66252 -13.51347 -13.34205 -12.96826 -12.48219 -12.45227 -12.10342 -11.72697 -11.60927 -11.49288 -11.22300 -10.96100 -10.90391 -10.82240 -10.72064 -10.55856 -10.22255 -10.12693 -9.92640 -9.81488 -9.60000 -9.53003 -8.96669 -8.39071 -8.22177 -7.85445 -7.62115 -6.60789 -5.49485 -2.86082 1.13489 1.67594 2.31907 2.98275 3.37404 3.50019 3.54228 3.56921 3.77670 4.09852 4.63552 4.69107 4.79230 4.84009 4.99329 4.99777 5.14197 5.21925 5.25981 5.29889 5.43973 5.54412 5.60944 5.65299 5.71765 5.75519 5.79598 5.81684 5.95310 6.00990 6.04073 6.14411 6.22858 6.28482 6.30955 6.49787 6.54273 6.59282 6.67087 6.77297 6.79345 6.83852 6.89304 7.20306 7.25716 7.39170 7.72254 7.91505 7.96301 8.20610 8.49030 8.89076 9.40379 10.01293 10.66288 11.58696 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.005022 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.467355 B = 5573.830204 C = 7789.518818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.103 4.103 12 H 0.080 0.920 13 C -0.101 4.101 14 C -0.129 4.129 15 C 0.112 3.888 16 N -0.587 5.587 17 C 0.569 3.431 18 O -0.500 6.500 19 C -0.203 4.203 20 C 0.083 3.917 21 N -0.585 5.585 22 H 0.416 0.584 23 C 0.086 3.914 24 C -0.136 4.136 25 C -0.099 4.099 26 C -0.145 4.145 27 C -0.054 4.054 28 C -0.065 4.065 29 C 0.134 3.866 30 H 0.058 0.942 31 C 0.171 3.829 32 H 0.252 0.748 33 H 0.014 0.986 34 H 0.031 0.969 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.179 0.821 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.135 0.865 46 H 0.051 0.949 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -15.982 -11.382 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.122 4.122 12 H 0.098 0.902 13 C -0.139 4.139 14 C -0.166 4.166 15 C -0.011 4.011 16 N -0.320 5.320 17 C 0.357 3.643 18 O -0.374 6.374 19 C -0.214 4.214 20 C -0.047 4.047 21 N -0.187 5.187 22 H 0.253 0.747 23 C -0.019 4.019 24 C -0.156 4.156 25 C -0.118 4.118 26 C -0.164 4.164 27 C -0.073 4.073 28 C -0.070 4.070 29 C 0.030 3.970 30 H 0.076 0.924 31 C 0.046 3.954 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.196 0.804 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.153 0.847 46 H 0.069 0.931 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.373 -15.353 -11.032 19.951 hybrid contribution 0.450 0.366 -0.271 0.641 sum -5.923 -14.987 -11.304 19.684 Atomic orbital electron populations 1.70021 1.04461 1.24785 1.56033 1.24828 0.95667 0.97420 1.02303 0.86220 0.78564 0.84103 0.77452 1.21754 1.21732 1.20858 1.18958 0.90205 0.82467 1.44635 0.90766 1.44385 1.01916 0.99789 1.87313 1.21422 0.93849 0.86137 0.97041 1.21379 0.95931 0.94543 1.00376 0.90155 1.20494 1.01600 0.96700 0.95148 1.21140 0.96903 1.01183 0.97408 1.20966 0.96078 0.87397 0.96691 1.46583 1.40567 1.24332 1.20554 1.17397 0.79937 0.82633 0.84378 1.90900 1.56070 1.27186 1.63238 1.20232 1.13588 0.92300 0.95314 1.22169 0.99301 0.98775 0.84476 1.41443 1.58321 1.06982 1.11947 0.74718 1.18227 1.04187 0.83490 0.96003 1.19916 1.06341 0.94537 0.94849 1.20789 0.99585 0.92796 0.98648 1.20966 1.02405 1.00038 0.92991 1.20820 0.95902 0.92468 0.98075 1.18756 1.03039 0.93232 0.91929 1.21183 0.94251 0.98851 0.82698 0.92369 1.21728 0.83442 0.86635 1.03591 0.93766 0.96797 0.95104 0.91639 0.92591 0.91148 0.91063 0.90456 0.93494 0.80444 0.86459 0.85873 0.85789 0.84717 0.93078 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 10.26 55.49 0.57 -27.76 16 2 C 0.00 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.86 10.26 -15.06 -0.15 -7.02 16 8 H 0.07 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -16.40 3.39 -171.16 -0.58 -16.98 16 10 C 0.14 3.05 6.63 -3.09 -0.02 3.03 16 11 C -0.10 -1.81 3.09 -91.41 -0.28 -2.10 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.10 -1.33 5.15 -28.72 -0.15 -1.48 16 14 C -0.13 -1.57 5.82 -28.27 -0.16 -1.73 16 15 C 0.11 1.46 4.77 -5.95 -0.03 1.43 16 16 N -0.59 -10.55 3.09 -171.68 -0.53 -11.08 16 17 C 0.57 11.48 6.70 -12.75 -0.09 11.39 16 18 O -0.50 -12.42 14.41 5.21 0.08 -12.34 16 19 C -0.20 -3.38 5.23 -103.31 -0.54 -3.92 16 20 C 0.08 0.95 9.45 -16.62 -0.16 0.79 16 21 N -0.58 -5.82 5.99 -10.48 -0.06 -5.89 16 22 H 0.42 2.43 8.96 -40.82 -0.37 2.06 16 23 C 0.09 1.14 7.26 -83.96 -0.61 0.54 16 24 C -0.14 -1.57 10.07 -39.43 -0.40 -1.96 16 25 C -0.10 -1.18 10.01 -39.57 -0.40 -1.58 16 26 C -0.14 -2.09 10.03 -39.57 -0.40 -2.48 16 27 C -0.05 -0.96 10.09 -39.37 -0.40 -1.36 16 28 C -0.07 -1.11 6.36 -104.95 -0.67 -1.78 16 29 C 0.13 2.74 3.14 -69.02 -0.22 2.52 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 C 0.17 4.52 4.13 -3.34 -0.01 4.50 16 32 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.01 0.31 6.61 -51.93 -0.34 -0.03 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.99 6.93 -51.93 -0.36 0.63 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.97 5.47 -51.93 -0.28 0.69 16 40 H 0.05 0.48 7.10 -51.93 -0.37 0.11 16 41 H 0.18 1.39 6.30 -52.48 -0.33 1.06 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.13 2.77 8.06 -52.48 -0.42 2.35 16 46 H 0.05 1.54 7.37 -51.92 -0.38 1.16 16 47 H 0.08 2.34 4.68 -51.93 -0.24 2.10 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -37.00 362.32 -11.31 -48.32 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.45 Total: 3.64 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -4.77 Total: -1.45 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.60 Total: -61.72 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.00 -11.31 -48.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050089563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.159 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds