Wall clock time and date at job start Tue Mar 31 2020 23:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48499 * 109.47405 * 270.00081 * 3 2 1 5 5 H 1.48503 * 109.47284 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.47146 * 149.99761 * 3 2 1 7 7 C 1.38818 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99914 * 359.72672 * 7 2 1 10 10 C 1.46923 * 125.37531 * 179.71863 * 9 7 2 11 11 C 1.54370 * 106.16132 * 162.01378 * 10 9 7 12 12 H 1.09001 * 109.50457 * 271.28930 * 11 10 9 13 13 C 1.50705 * 109.94999 * 151.13945 * 11 10 9 14 14 C 1.51337 * 113.53553 * 289.97037 * 13 11 10 15 15 C 1.51628 * 111.98402 * 304.62903 * 14 13 11 16 16 N 1.44223 * 112.79494 * 42.20138 * 15 14 13 17 17 C 1.34779 * 116.39974 * 154.57145 * 16 15 14 18 18 O 1.21671 * 119.99997 * 175.45259 * 17 16 15 19 19 C 1.46913 * 119.99908 * 355.45781 * 17 16 15 20 20 C 1.36375 * 126.76800 * 41.99913 * 19 17 16 21 21 N 1.35469 * 109.76789 * 179.86493 * 20 19 17 22 22 H 0.96998 * 124.78724 * 180.20276 * 21 20 19 23 23 C 1.37963 * 110.42860 * 0.41945 * 21 20 19 24 24 C 1.39124 * 133.19216 * 179.76127 * 23 21 20 25 25 C 1.37764 * 119.92973 * 180.02562 * 24 23 21 26 26 C 1.38749 * 120.63713 * 359.95596 * 25 24 23 27 27 C 1.37760 * 120.29926 * 0.02562 * 26 25 24 28 28 C 1.39274 * 119.67566 * 0.02562 * 27 26 25 29 29 C 1.44112 * 126.96190 * 335.76806 * 16 15 14 30 30 H 1.09005 * 108.48014 * 253.21731 * 29 16 15 31 31 C 1.46811 * 125.37644 * 0.02685 * 9 7 2 32 32 H 0.96998 * 119.99604 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.09851 * 281.33917 * 10 9 7 34 34 H 1.09002 * 110.10006 * 42.93766 * 10 9 7 35 35 H 1.09003 * 108.67548 * 51.01487 * 13 11 10 36 36 H 1.08994 * 108.66892 * 169.05563 * 13 11 10 37 37 H 1.08991 * 108.97907 * 65.27703 * 14 13 11 38 38 H 1.09006 * 108.97489 * 184.07037 * 14 13 11 39 39 H 1.08997 * 108.84471 * 163.53752 * 15 14 13 40 40 H 1.09004 * 108.84701 * 281.89432 * 15 14 13 41 41 H 1.08003 * 125.11595 * 0.02562 * 20 19 17 42 42 H 1.08002 * 120.03256 * 0.02562 * 24 23 21 43 43 H 1.08001 * 119.68001 * 179.97438 * 25 24 23 44 44 H 1.07994 * 119.85483 * 180.02562 * 26 25 24 45 45 H 1.08007 * 120.16122 * 180.02562 * 27 26 25 46 46 H 1.09009 * 109.84149 * 300.37232 * 31 9 7 47 47 H 1.08999 * 109.84793 * 61.38213 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0067 10 6 1.9377 -3.7237 0.0021 11 6 0.8386 -4.7017 0.4695 12 1 0.8612 -4.7821 1.5563 13 6 1.0692 -6.0622 -0.1364 14 6 0.8144 -6.1108 -1.6274 15 6 -0.5792 -5.6292 -1.9810 16 7 -0.9707 -4.4570 -1.2375 17 6 -1.8973 -3.6647 -1.8122 18 8 -2.3361 -2.7043 -1.2075 19 6 -2.3777 -3.9608 -3.1686 20 6 -2.6840 -5.1889 -3.6762 21 7 -3.0962 -5.0640 -4.9606 22 1 -3.3702 -5.8014 -5.5281 23 6 -3.0665 -3.7406 -5.3494 24 6 -3.3795 -3.0903 -6.5388 25 6 -3.2463 -1.7221 -6.6297 26 6 -2.8025 -0.9812 -5.5439 27 6 -2.4879 -1.6067 -4.3575 28 6 -2.6169 -2.9895 -4.2517 29 6 -0.4601 -4.0312 0.0410 30 1 -1.2232 -4.2165 0.7970 31 6 -0.1361 -2.5256 0.0126 32 1 -0.4849 0.8401 -0.0004 33 1 2.2683 -3.9808 -1.0043 34 1 2.7808 -3.7518 0.6924 35 1 2.1018 -6.3572 0.0508 36 1 0.4085 -6.7783 0.3521 37 1 1.5461 -5.4806 -2.1328 38 1 0.9318 -7.1376 -1.9737 39 1 -0.6144 -5.4054 -3.0472 40 1 -1.2919 -6.4257 -1.7669 41 1 -2.6116 -6.1206 -3.1348 42 1 -3.7265 -3.6575 -7.3898 43 1 -3.4900 -1.2215 -7.5551 44 1 -2.7031 0.0908 -5.6290 45 1 -2.1431 -1.0277 -3.5135 46 1 -0.5497 -2.0414 0.8973 47 1 -0.5539 -2.0741 -0.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050089563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:05 Heat of formation + Delta-G solvation = 48.321792 kcal Electronic energy + Delta-G solvation = -30668.413637 eV Core-core repulsion = 26816.741256 eV Total energy + Delta-G solvation = -3851.672381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.60543 -41.50127 -38.95698 -37.92996 -36.96984 -34.70781 -33.76195 -32.98717 -31.52408 -30.50312 -29.98279 -28.61998 -27.32404 -25.83841 -24.17866 -23.72507 -23.37191 -22.66037 -22.19493 -20.27728 -19.35897 -19.03491 -18.51274 -17.64206 -17.17455 -17.08793 -17.02130 -16.36105 -16.16823 -15.76302 -15.59119 -15.30209 -15.08962 -14.93569 -14.74588 -14.64454 -14.26251 -14.12213 -13.76606 -13.69895 -13.39387 -13.00390 -12.93580 -12.71822 -12.66493 -12.57235 -12.35827 -12.11772 -11.95328 -11.91806 -11.76672 -11.55837 -11.41920 -11.30187 -10.81037 -10.72165 -10.40090 -9.38185 -9.24464 -8.85552 -8.68753 -7.79132 -5.19827 0.06446 0.58553 1.17189 1.37768 1.42221 1.51038 1.95782 2.11081 2.47134 2.50099 2.94446 3.33868 3.56111 3.71926 3.73530 3.85904 3.89064 3.91617 4.04127 4.08379 4.14736 4.18736 4.37771 4.45495 4.54843 4.59560 4.62305 4.68614 4.74122 4.76984 4.82247 4.85870 4.93984 5.02011 5.12422 5.18388 5.23074 5.40150 5.43207 5.44494 5.50330 5.51874 5.55087 5.61832 5.71522 5.85463 6.08562 6.13382 6.25360 6.59449 6.66625 7.08901 7.44883 7.81527 8.44142 9.26634 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.005022 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.467355 B = 5573.830204 C = 7789.518818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.071 4.071 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.261 1.261 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.631 5.631 10 C 0.136 3.864 11 C -0.088 4.088 12 H 0.086 0.914 13 C -0.098 4.098 14 C -0.126 4.126 15 C 0.098 3.902 16 N -0.584 5.584 17 C 0.560 3.440 18 O -0.574 6.574 19 C -0.270 4.270 20 C 0.142 3.858 21 N -0.555 5.555 22 H 0.444 0.556 23 C 0.082 3.918 24 C -0.112 4.112 25 C -0.103 4.103 26 C -0.143 4.143 27 C -0.111 4.111 28 C -0.099 4.099 29 C 0.146 3.854 30 H 0.052 0.948 31 C 0.185 3.815 32 H 0.240 0.760 33 H 0.020 0.980 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.228 0.772 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.128 0.872 45 H 0.072 0.928 46 H -0.008 1.008 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.712 -21.384 -14.610 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.377 4.377 8 H 0.102 0.898 9 N -0.358 5.358 10 C 0.011 3.989 11 C -0.108 4.108 12 H 0.104 0.896 13 C -0.135 4.135 14 C -0.164 4.164 15 C -0.023 4.023 16 N -0.316 5.316 17 C 0.351 3.649 18 O -0.453 6.453 19 C -0.280 4.280 20 C 0.009 3.991 21 N -0.159 5.159 22 H 0.287 0.713 23 C -0.024 4.024 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.162 4.162 27 C -0.130 4.130 28 C -0.103 4.103 29 C 0.041 3.959 30 H 0.070 0.930 31 C 0.060 3.940 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.245 0.755 42 H 0.184 0.816 43 H 0.181 0.819 44 H 0.146 0.854 45 H 0.091 0.909 46 H 0.010 0.990 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.970 -20.859 -14.320 25.996 hybrid contribution 0.327 2.013 0.663 2.144 sum -5.644 -18.846 -13.658 23.949 Atomic orbital electron populations 1.70368 1.06406 1.24683 1.57556 1.25806 0.96505 1.01404 1.02676 0.85089 0.77813 0.79088 0.77434 1.21437 1.22225 1.18546 1.19440 0.90894 0.83831 1.43567 0.89813 1.44737 1.02469 1.01501 1.87083 1.21682 0.95286 0.84444 0.97522 1.21388 0.91991 0.96289 1.01112 0.89565 1.20529 1.03718 0.93434 0.95857 1.21215 0.95208 1.03535 0.96396 1.21465 0.98205 0.86248 0.96420 1.46635 1.39539 1.25644 1.19782 1.18112 0.79586 0.81645 0.85603 1.90853 1.58891 1.30351 1.65220 1.20009 1.19131 0.94873 0.94027 1.22668 0.93986 0.98171 0.84296 1.41397 1.56303 1.06565 1.11624 0.71340 1.18330 1.04145 0.84490 0.95396 1.20475 1.03071 0.94438 0.95186 1.21188 0.98868 0.93397 0.98766 1.21147 1.01610 1.00659 0.92758 1.20574 1.00706 0.93713 0.97986 1.19062 1.03944 0.93147 0.94153 1.20732 0.95746 0.94977 0.84469 0.93004 1.21247 0.83056 0.90810 0.98907 0.95044 0.96256 0.94288 0.89562 0.89489 0.93722 0.85907 0.89837 0.88632 0.75539 0.81558 0.81947 0.85431 0.90928 0.99023 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -65.19 10.26 21.65 0.22 -64.97 16 2 C -0.07 -4.50 5.48 84.86 0.47 -4.04 16 3 Si 0.98 50.55 29.55 68.60 2.03 52.57 16 4 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.30 -15.36 7.11 99.48 0.71 -14.66 16 6 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.25 -15.42 10.26 84.03 0.86 -14.56 16 8 H 0.08 4.89 7.83 -2.91 -0.02 4.87 16 9 N -0.63 -36.46 3.39 -695.43 -2.36 -38.82 16 10 C 0.14 5.92 6.63 86.76 0.58 6.50 16 11 C -0.09 -3.06 3.09 -11.30 -0.03 -3.10 16 12 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 13 C -0.10 -2.15 5.15 29.31 0.15 -2.00 16 14 C -0.13 -2.48 5.82 29.60 0.17 -2.31 16 15 C 0.10 2.20 4.77 86.35 0.41 2.61 16 16 N -0.58 -21.42 3.09 -815.29 -2.52 -23.94 16 17 C 0.56 24.48 6.70 86.51 0.58 25.06 16 18 O -0.57 -32.60 14.41 -4.26 -0.06 -32.66 16 19 C -0.27 -9.19 5.23 -19.02 -0.10 -9.29 16 20 C 0.14 2.70 9.45 83.70 0.79 3.49 16 21 N -0.56 -8.36 5.99 -187.07 -1.12 -9.48 16 22 H 0.44 2.13 8.96 -92.71 -0.83 1.30 16 23 C 0.08 1.98 7.26 38.92 0.28 2.27 16 24 C -0.11 -2.14 10.07 22.37 0.23 -1.92 16 25 C -0.10 -2.27 10.01 22.28 0.22 -2.04 16 26 C -0.14 -4.44 10.03 22.28 0.22 -4.22 16 27 C -0.11 -4.52 10.09 22.41 0.23 -4.30 16 28 C -0.10 -3.56 6.36 -20.08 -0.13 -3.68 16 29 C 0.15 6.29 3.14 45.55 0.14 6.43 16 30 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 31 C 0.19 10.86 4.13 86.67 0.36 11.22 16 32 H 0.24 16.36 8.31 -92.71 -0.77 15.59 16 33 H 0.02 0.84 6.61 -2.39 -0.02 0.83 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.04 1.12 6.93 -2.39 -0.02 1.10 16 38 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.08 1.80 5.47 -2.39 -0.01 1.79 16 40 H 0.10 1.29 7.10 -2.38 -0.02 1.27 16 41 H 0.23 1.97 6.30 -2.91 -0.02 1.95 16 42 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 44 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.07 3.72 8.06 -2.91 -0.02 3.69 16 46 H -0.01 -0.58 7.37 -2.38 -0.02 -0.59 16 47 H 0.04 2.46 4.68 -2.39 -0.01 2.45 16 Total: -1.00 -100.50 362.32 1.80 -98.70 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.18 Total: 12.47 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.43 Total: 6.12 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -5.77 Total: -137.21 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.06 Total: -32.66 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.03 Total: 52.57 kcal Total: -100.50 1.80 -98.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050089563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.025 kcal (2) G-P(sol) polarization free energy of solvation -100.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds