Wall clock time and date at job start Tue Mar 31 2020 22:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99916 * 2 1 4 4 H 1.48498 * 109.47156 * 274.98479 * 3 2 1 5 5 H 1.48500 * 109.47077 * 34.98690 * 3 2 1 6 6 H 1.48507 * 109.47242 * 154.98499 * 3 2 1 7 7 C 1.38815 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99921 * 172.66664 * 7 2 1 9 9 N 1.36930 * 119.99840 * 352.66700 * 7 2 1 10 10 C 1.46935 * 125.37333 * 185.26398 * 9 7 2 11 11 C 1.54184 * 106.26036 * 162.12803 * 10 9 7 12 12 H 1.08997 * 109.28675 * 271.45472 * 11 10 9 13 13 C 1.50710 * 110.50612 * 151.09614 * 11 10 9 14 14 C 1.51323 * 113.54734 * 289.39332 * 13 11 10 15 15 C 1.51632 * 111.98020 * 304.60995 * 14 13 11 16 16 N 1.44504 * 112.65277 * 42.75999 * 15 14 13 17 17 C 1.34773 * 116.63073 * 154.60335 * 16 15 14 18 18 O 1.21585 * 119.99960 * 177.10887 * 17 16 15 19 19 C 1.47656 * 120.00164 * 357.10892 * 17 16 15 20 20 C 1.40202 * 119.97373 * 25.91683 * 19 17 16 21 21 C 1.36320 * 120.67175 * 179.70185 * 20 19 17 22 22 C 1.39369 * 120.23334 * 0.25499 * 21 20 19 23 23 N 1.37396 * 133.24639 * 179.97438 * 22 21 20 24 24 H 0.97007 * 125.00920 * 0.02562 * 23 22 21 25 25 C 1.36858 * 109.98191 * 180.02562 * 23 22 21 26 26 C 1.34197 * 109.95823 * 359.97438 * 25 23 22 27 27 C 1.40871 * 119.63970 * 0.02562 * 22 21 20 28 28 C 1.39156 * 119.97339 * 206.16139 * 19 17 16 29 29 C 1.44104 * 126.73857 * 334.88698 * 16 15 14 30 30 H 1.09010 * 109.10622 * 253.58081 * 29 16 15 31 31 C 1.46815 * 125.37819 * 5.24169 * 9 7 2 32 32 H 0.96998 * 120.00290 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.09433 * 42.93353 * 10 9 7 34 34 H 1.08998 * 110.09563 * 281.32680 * 10 9 7 35 35 H 1.08999 * 108.66675 * 168.33916 * 13 11 10 36 36 H 1.09004 * 108.56266 * 50.36788 * 13 11 10 37 37 H 1.08998 * 108.98243 * 183.96772 * 14 13 11 38 38 H 1.09002 * 108.98219 * 65.25465 * 14 13 11 39 39 H 1.08994 * 108.84799 * 281.94205 * 15 14 13 40 40 H 1.08994 * 108.84462 * 163.57637 * 15 14 13 41 41 H 1.08006 * 119.66334 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.88109 * 180.27247 * 21 20 19 43 43 H 1.07999 * 125.02177 * 179.97438 * 25 23 22 44 44 H 1.07996 * 126.54278 * 180.02562 * 26 25 23 45 45 H 1.07998 * 120.30246 * 0.02562 * 28 19 17 46 46 H 1.09004 * 109.84054 * 300.41831 * 31 9 7 47 47 H 1.08993 * 109.84247 * 61.33105 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0836 -1.2060 -0.1188 9 7 1.3340 -2.3831 0.1524 10 6 1.9551 -3.7086 0.2799 11 6 0.8756 -4.6358 0.8735 12 1 0.9229 -4.5930 1.9616 13 6 1.0927 -6.0566 0.4202 14 6 0.7891 -6.2765 -1.0459 15 6 -0.6179 -5.8406 -1.4057 16 7 -0.9836 -4.5822 -0.7966 17 6 -1.9323 -3.8600 -1.4249 18 8 -2.3243 -2.8171 -0.9382 19 6 -2.4956 -4.3353 -2.7044 20 6 -2.4922 -5.7046 -3.0055 21 6 -3.0140 -6.1596 -4.1798 22 6 -3.5546 -5.2644 -5.1011 23 7 -4.1365 -5.4210 -6.3359 24 1 -4.2660 -6.2703 -6.7864 25 6 -4.5066 -4.2022 -6.8364 26 6 -4.1866 -3.2329 -5.9653 27 6 -3.5587 -3.8856 -4.8128 28 6 -3.0249 -3.4234 -3.6125 29 6 -0.4349 -4.0170 0.4101 30 1 -1.1689 -4.1051 1.2112 31 6 -0.1260 -2.5247 0.2141 32 1 -0.4850 0.8400 -0.0004 33 1 2.8138 -3.6570 0.9493 34 1 2.2644 -4.0730 -0.6996 35 1 0.4537 -6.7129 1.0111 36 1 2.1329 -6.3248 0.6051 37 1 0.9018 -7.3359 -1.2763 38 1 1.5005 -5.7075 -1.6445 39 1 -1.3191 -6.6077 -1.0772 40 1 -0.6896 -5.7414 -2.4888 41 1 -2.0759 -6.4065 -2.2980 42 1 -3.0087 -7.2176 -4.3969 43 1 -4.9855 -4.0439 -7.7914 44 1 -4.3584 -2.1740 -6.0899 45 1 -3.0256 -2.3673 -3.3865 46 1 -0.5184 -1.9497 1.0528 47 1 -0.5714 -2.1726 -0.7163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050128013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:30 Heat of formation + Delta-G solvation = 102.505035 kcal Electronic energy + Delta-G solvation = -30291.424079 eV Core-core repulsion = 26442.101260 eV Total energy + Delta-G solvation = -3849.322820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41785 -40.50513 -37.85882 -36.59956 -35.27683 -33.16049 -32.06159 -31.96833 -30.12624 -29.32953 -28.72006 -27.05969 -25.66478 -24.32327 -23.49498 -22.30173 -21.67285 -20.99150 -20.53128 -19.34218 -18.25541 -17.87845 -17.17521 -16.57136 -15.87274 -15.66643 -15.26145 -14.67508 -14.51794 -14.31144 -14.18201 -13.96972 -13.86813 -13.83289 -13.54438 -13.20216 -12.92942 -12.54680 -12.43714 -12.31046 -12.06262 -11.89829 -11.37358 -11.18101 -10.96512 -10.89725 -10.70917 -10.56675 -10.54438 -10.18548 -10.10222 -9.93436 -9.84692 -9.77068 -9.54823 -8.91352 -8.38940 -8.17235 -7.90843 -7.73816 -6.59749 -5.50692 -2.85895 1.10839 1.32034 2.64153 2.99250 3.29170 3.49925 3.53051 3.54995 3.57591 4.10859 4.63759 4.64582 4.70841 4.82437 4.88126 4.98670 5.06090 5.16582 5.25448 5.26219 5.38472 5.51447 5.54413 5.59081 5.64936 5.73736 5.78991 5.91795 5.93232 5.98907 6.04665 6.09845 6.15028 6.28119 6.30342 6.33829 6.50694 6.54088 6.63097 6.68544 6.70231 6.80192 6.88632 7.06932 7.23475 7.37586 7.73078 7.89359 7.95582 8.20483 8.49306 8.83846 9.40077 10.01469 10.66901 11.57928 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.003956 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.696302 B = 7076.770784 C = 8883.787719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.101 4.101 14 C -0.132 4.132 15 C 0.102 3.898 16 N -0.584 5.584 17 C 0.543 3.457 18 O -0.500 6.500 19 C -0.154 4.154 20 C -0.097 4.097 21 C -0.146 4.146 22 C 0.111 3.889 23 N -0.596 5.596 24 H 0.414 0.586 25 C 0.038 3.962 26 C -0.190 4.190 27 C -0.123 4.123 28 C -0.002 4.002 29 C 0.132 3.868 30 H 0.057 0.943 31 C 0.167 3.833 32 H 0.252 0.748 33 H 0.032 0.968 34 H 0.014 0.986 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.159 0.841 42 H 0.121 0.879 43 H 0.169 0.831 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.053 0.947 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -18.278 -10.838 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.122 4.122 12 H 0.098 0.902 13 C -0.139 4.139 14 C -0.170 4.170 15 C -0.020 4.020 16 N -0.318 5.318 17 C 0.331 3.669 18 O -0.375 6.375 19 C -0.159 4.159 20 C -0.115 4.115 21 C -0.166 4.166 22 C 0.002 3.998 23 N -0.199 5.199 24 H 0.250 0.750 25 C -0.087 4.087 26 C -0.215 4.215 27 C -0.128 4.128 28 C -0.021 4.021 29 C 0.029 3.971 30 H 0.075 0.925 31 C 0.043 3.957 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.175 0.825 42 H 0.139 0.861 43 H 0.187 0.813 44 H 0.166 0.834 45 H 0.155 0.845 46 H 0.071 0.929 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.713 -17.577 -10.606 21.930 hybrid contribution 0.459 0.458 -0.342 0.733 sum -7.254 -17.118 -10.948 21.576 Atomic orbital electron populations 1.70039 1.04540 1.24813 1.55705 1.24850 0.95630 0.97446 1.02212 0.86225 0.78694 0.84229 0.77370 1.21826 1.21690 1.20777 1.18954 0.90965 0.82651 1.43821 0.90754 1.44400 1.01942 1.00936 1.86127 1.21377 0.93930 0.86552 0.96574 1.21312 0.95833 0.94406 1.00629 0.90219 1.20487 1.01609 0.96176 0.95678 1.21214 0.96808 1.01244 0.97736 1.21748 0.95988 0.85598 0.98701 1.46578 1.39035 1.20079 1.26076 1.18296 0.80242 0.84039 0.84345 1.90891 1.58867 1.21893 1.65890 1.19744 1.05921 0.93785 0.96437 1.21910 0.96946 0.95660 0.97023 1.19656 1.04519 0.97980 0.94477 1.18460 0.98927 0.95298 0.87088 1.41740 1.53365 1.08756 1.16083 0.74997 1.21769 1.03381 0.83707 0.99891 1.21796 1.06654 0.99094 0.93920 1.19146 1.05127 0.92266 0.96224 1.20731 0.91311 1.00170 0.89887 1.21073 0.93969 0.97384 0.84713 0.92459 1.21725 0.83608 0.86663 1.03746 0.93769 0.95031 0.96852 0.92517 0.91610 0.90873 0.91069 0.92347 0.89087 0.82463 0.86102 0.81340 0.83383 0.84537 0.92902 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.50 10.31 55.49 0.57 -27.92 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.90 23.16 29.56 -169.99 -5.02 18.13 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.94 10.24 -15.06 -0.15 -7.09 16 8 H 0.07 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.61 -16.48 3.39 -171.51 -0.58 -17.06 16 10 C 0.14 3.06 6.65 -3.19 -0.02 3.04 16 11 C -0.10 -1.81 3.05 -91.58 -0.28 -2.09 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.10 -1.34 5.17 -28.72 -0.15 -1.48 16 14 C -0.13 -1.61 5.83 -28.27 -0.16 -1.77 16 15 C 0.10 1.35 4.39 -5.80 -0.03 1.32 16 16 N -0.58 -10.59 3.09 -171.81 -0.53 -11.12 16 17 C 0.54 10.93 6.71 -12.42 -0.08 10.85 16 18 O -0.50 -12.36 13.77 5.29 0.07 -12.29 16 19 C -0.15 -2.56 5.47 -104.97 -0.57 -3.14 16 20 C -0.10 -1.22 7.35 -39.54 -0.29 -1.51 16 21 C -0.15 -1.60 10.00 -39.85 -0.40 -2.00 16 22 C 0.11 1.33 7.27 -83.96 -0.61 0.72 16 23 N -0.60 -5.22 6.05 -10.61 -0.06 -5.29 16 24 H 0.41 2.17 8.96 -40.82 -0.37 1.81 16 25 C 0.04 0.33 11.81 -16.73 -0.20 0.13 16 26 C -0.19 -2.21 11.09 -37.65 -0.42 -2.62 16 27 C -0.12 -1.76 6.36 -105.16 -0.67 -2.43 16 28 C 0.00 -0.03 9.64 -38.86 -0.37 -0.40 16 29 C 0.13 2.72 3.11 -69.30 -0.22 2.50 16 30 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 31 C 0.17 4.44 4.13 -3.53 -0.01 4.43 16 32 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.99 7.00 -51.93 -0.36 0.62 16 39 H 0.06 0.62 6.65 -51.93 -0.35 0.28 16 40 H 0.09 1.15 4.85 -51.93 -0.25 0.90 16 41 H 0.16 1.63 3.73 -52.85 -0.20 1.43 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.14 2.47 7.86 -52.49 -0.41 2.05 16 46 H 0.05 1.60 7.28 -51.93 -0.38 1.22 16 47 H 0.08 2.37 4.71 -51.93 -0.24 2.12 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -37.22 358.12 -11.15 -48.37 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.26 Total: 3.55 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -4.74 Total: -1.77 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.60 Total: -61.39 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.22 -11.15 -48.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050128013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.878 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds