Wall clock time and date at job start Tue Mar 31 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99916 * 2 1 4 4 H 1.48498 * 109.47156 * 274.98479 * 3 2 1 5 5 H 1.48500 * 109.47077 * 34.98690 * 3 2 1 6 6 H 1.48507 * 109.47242 * 154.98499 * 3 2 1 7 7 C 1.38815 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99921 * 172.66664 * 7 2 1 9 9 N 1.36930 * 119.99840 * 352.66700 * 7 2 1 10 10 C 1.46935 * 125.37333 * 185.26398 * 9 7 2 11 11 C 1.54184 * 106.26036 * 162.12803 * 10 9 7 12 12 H 1.08997 * 109.28675 * 271.45472 * 11 10 9 13 13 C 1.50710 * 110.50612 * 151.09614 * 11 10 9 14 14 C 1.51323 * 113.54734 * 289.39332 * 13 11 10 15 15 C 1.51632 * 111.98020 * 304.60995 * 14 13 11 16 16 N 1.44504 * 112.65277 * 42.75999 * 15 14 13 17 17 C 1.34773 * 116.63073 * 154.60335 * 16 15 14 18 18 O 1.21585 * 119.99960 * 177.10887 * 17 16 15 19 19 C 1.47656 * 120.00164 * 357.10892 * 17 16 15 20 20 C 1.40202 * 119.97373 * 25.91683 * 19 17 16 21 21 C 1.36320 * 120.67175 * 179.70185 * 20 19 17 22 22 C 1.39369 * 120.23334 * 0.25499 * 21 20 19 23 23 N 1.37396 * 133.24639 * 179.97438 * 22 21 20 24 24 H 0.97007 * 125.00920 * 0.02562 * 23 22 21 25 25 C 1.36858 * 109.98191 * 180.02562 * 23 22 21 26 26 C 1.34197 * 109.95823 * 359.97438 * 25 23 22 27 27 C 1.40871 * 119.63970 * 0.02562 * 22 21 20 28 28 C 1.39156 * 119.97339 * 206.16139 * 19 17 16 29 29 C 1.44104 * 126.73857 * 334.88698 * 16 15 14 30 30 H 1.09010 * 109.10622 * 253.58081 * 29 16 15 31 31 C 1.46815 * 125.37819 * 5.24169 * 9 7 2 32 32 H 0.96998 * 120.00290 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.09433 * 42.93353 * 10 9 7 34 34 H 1.08998 * 110.09563 * 281.32680 * 10 9 7 35 35 H 1.08999 * 108.66675 * 168.33916 * 13 11 10 36 36 H 1.09004 * 108.56266 * 50.36788 * 13 11 10 37 37 H 1.08998 * 108.98243 * 183.96772 * 14 13 11 38 38 H 1.09002 * 108.98219 * 65.25465 * 14 13 11 39 39 H 1.08994 * 108.84799 * 281.94205 * 15 14 13 40 40 H 1.08994 * 108.84462 * 163.57637 * 15 14 13 41 41 H 1.08006 * 119.66334 * 359.97438 * 20 19 17 42 42 H 1.08001 * 119.88109 * 180.27247 * 21 20 19 43 43 H 1.07999 * 125.02177 * 179.97438 * 25 23 22 44 44 H 1.07996 * 126.54278 * 180.02562 * 26 25 23 45 45 H 1.07998 * 120.30246 * 0.02562 * 28 19 17 46 46 H 1.09004 * 109.84054 * 300.41831 * 31 9 7 47 47 H 1.08993 * 109.84247 * 61.33105 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0836 -1.2060 -0.1188 9 7 1.3340 -2.3831 0.1524 10 6 1.9551 -3.7086 0.2799 11 6 0.8756 -4.6358 0.8735 12 1 0.9229 -4.5930 1.9616 13 6 1.0927 -6.0566 0.4202 14 6 0.7891 -6.2765 -1.0459 15 6 -0.6179 -5.8406 -1.4057 16 7 -0.9836 -4.5822 -0.7966 17 6 -1.9323 -3.8600 -1.4249 18 8 -2.3243 -2.8171 -0.9382 19 6 -2.4956 -4.3353 -2.7044 20 6 -2.4922 -5.7046 -3.0055 21 6 -3.0140 -6.1596 -4.1798 22 6 -3.5546 -5.2644 -5.1011 23 7 -4.1365 -5.4210 -6.3359 24 1 -4.2660 -6.2703 -6.7864 25 6 -4.5066 -4.2022 -6.8364 26 6 -4.1866 -3.2329 -5.9653 27 6 -3.5587 -3.8856 -4.8128 28 6 -3.0249 -3.4234 -3.6125 29 6 -0.4349 -4.0170 0.4101 30 1 -1.1689 -4.1051 1.2112 31 6 -0.1260 -2.5247 0.2141 32 1 -0.4850 0.8400 -0.0004 33 1 2.8138 -3.6570 0.9493 34 1 2.2644 -4.0730 -0.6996 35 1 0.4537 -6.7129 1.0111 36 1 2.1329 -6.3248 0.6051 37 1 0.9018 -7.3359 -1.2763 38 1 1.5005 -5.7075 -1.6445 39 1 -1.3191 -6.6077 -1.0772 40 1 -0.6896 -5.7414 -2.4888 41 1 -2.0759 -6.4065 -2.2980 42 1 -3.0087 -7.2176 -4.3969 43 1 -4.9855 -4.0439 -7.7914 44 1 -4.3584 -2.1740 -6.0899 45 1 -3.0256 -2.3673 -3.3865 46 1 -0.5184 -1.9497 1.0528 47 1 -0.5714 -2.1726 -0.7163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050128013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:28 Heat of formation + Delta-G solvation = 76.348452 kcal Electronic energy + Delta-G solvation = -30292.558314 eV Core-core repulsion = 26442.101260 eV Total energy + Delta-G solvation = -3850.457054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49755 -41.78051 -39.34577 -37.87111 -36.84809 -34.73055 -33.77748 -32.96998 -31.80430 -30.55880 -29.76144 -28.72644 -27.36408 -25.96680 -24.69084 -23.56983 -22.84226 -22.50329 -21.72175 -20.75077 -19.48253 -19.05706 -18.73073 -18.15068 -17.37586 -17.06307 -16.72108 -16.33436 -15.74719 -15.70995 -15.40887 -15.33903 -15.12025 -14.99791 -14.78995 -14.36877 -14.12748 -14.01098 -13.83114 -13.76532 -13.44849 -13.32864 -12.99368 -12.93318 -12.69688 -12.50691 -12.18482 -12.07953 -11.99433 -11.81589 -11.77554 -11.43351 -11.37316 -11.27591 -10.75490 -10.70552 -10.41876 -9.43609 -9.17646 -8.82962 -8.68720 -7.80143 -5.19362 0.00297 0.32144 1.39323 1.43179 1.52885 1.80855 1.87940 2.16613 2.27141 2.48466 2.94123 3.33032 3.49135 3.70098 3.73240 3.78514 3.88588 3.95131 4.03539 4.05924 4.08198 4.27554 4.33314 4.46008 4.53773 4.57358 4.68667 4.71499 4.73270 4.81294 4.87468 4.93420 4.96732 5.02144 5.10411 5.17386 5.22080 5.35188 5.41330 5.43748 5.47480 5.50691 5.54459 5.63840 5.73266 5.84033 6.05332 6.12254 6.25406 6.52345 6.75318 7.08889 7.34242 7.81693 8.44962 9.26560 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.003956 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.696302 B = 7076.770784 C = 8883.787719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.249 4.249 8 H 0.084 0.916 9 N -0.631 5.631 10 C 0.135 3.865 11 C -0.087 4.087 12 H 0.085 0.915 13 C -0.098 4.098 14 C -0.129 4.129 15 C 0.087 3.913 16 N -0.580 5.580 17 C 0.530 3.470 18 O -0.570 6.570 19 C -0.171 4.171 20 C -0.098 4.098 21 C -0.122 4.122 22 C 0.107 3.893 23 N -0.577 5.577 24 H 0.437 0.563 25 C 0.076 3.924 26 C -0.239 4.239 27 C -0.148 4.148 28 C -0.039 4.039 29 C 0.144 3.856 30 H 0.050 0.950 31 C 0.181 3.819 32 H 0.241 0.759 33 H 0.040 0.960 34 H 0.021 0.979 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.049 0.951 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.188 0.812 42 H 0.172 0.828 43 H 0.218 0.782 44 H 0.146 0.854 45 H 0.092 0.908 46 H -0.005 1.005 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 -23.818 -13.209 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.378 4.378 8 H 0.102 0.898 9 N -0.358 5.358 10 C 0.011 3.989 11 C -0.107 4.107 12 H 0.103 0.897 13 C -0.136 4.136 14 C -0.167 4.167 15 C -0.033 4.033 16 N -0.312 5.312 17 C 0.320 3.680 18 O -0.450 6.450 19 C -0.176 4.176 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.003 4.003 23 N -0.181 5.181 24 H 0.278 0.722 25 C -0.050 4.050 26 C -0.263 4.263 27 C -0.153 4.153 28 C -0.059 4.059 29 C 0.039 3.961 30 H 0.068 0.932 31 C 0.056 3.944 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.143 0.857 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.204 0.796 42 H 0.189 0.811 43 H 0.235 0.765 44 H 0.164 0.836 45 H 0.110 0.890 46 H 0.014 0.986 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.848 -23.229 -13.009 27.490 hybrid contribution 0.151 2.167 0.250 2.187 sum -6.697 -21.061 -12.759 25.519 Atomic orbital electron populations 1.70374 1.06497 1.24803 1.57356 1.25818 0.96461 1.01428 1.02583 0.85077 0.77974 0.79147 0.77239 1.21508 1.22167 1.18545 1.19441 0.91611 0.84003 1.42792 0.89803 1.44748 1.02474 1.02613 1.85937 1.21638 0.95252 0.84754 0.97298 1.21327 0.91857 0.96760 1.00763 0.89672 1.20532 1.03768 0.92447 0.96848 1.21292 0.94932 1.03989 0.96452 1.22272 0.98199 0.83764 0.99092 1.46643 1.37888 1.21570 1.25090 1.19088 0.80172 0.83290 0.85413 1.90849 1.61376 1.24960 1.67774 1.19587 1.07314 0.96032 0.94653 1.22102 0.97493 0.93501 0.98523 1.20141 1.01338 1.00059 0.92669 1.18654 0.98972 0.94168 0.88505 1.41779 1.51647 1.09954 1.14745 0.72244 1.22423 0.99933 0.82529 1.00126 1.22024 1.09414 1.00279 0.94593 1.19404 1.05426 0.94603 0.95898 1.20555 0.94496 0.98455 0.92358 1.20657 0.95585 0.93958 0.85922 0.93188 1.21241 0.83290 0.90521 0.99342 0.94937 0.94179 0.96115 0.89550 0.89395 0.85660 0.93262 0.88045 0.88279 0.79557 0.81070 0.76520 0.83577 0.88984 0.98641 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -64.83 10.31 21.65 0.22 -64.61 16 2 C -0.07 -4.40 5.48 84.86 0.46 -3.94 16 3 Si 0.98 50.14 29.56 68.60 2.03 52.17 16 4 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 5 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 6 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.25 -15.41 10.24 84.04 0.86 -14.55 16 8 H 0.08 4.87 7.84 -2.91 -0.02 4.85 16 9 N -0.63 -36.22 3.39 -696.52 -2.36 -38.58 16 10 C 0.14 5.87 6.65 86.70 0.58 6.45 16 11 C -0.09 -3.03 3.05 -11.41 -0.03 -3.07 16 12 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 13 C -0.10 -2.16 5.17 29.30 0.15 -2.01 16 14 C -0.13 -2.53 5.83 29.60 0.17 -2.36 16 15 C 0.09 2.01 4.39 86.30 0.38 2.39 16 16 N -0.58 -21.55 3.09 -815.73 -2.52 -24.07 16 17 C 0.53 23.32 6.71 86.73 0.58 23.90 16 18 O -0.57 -32.11 13.77 -3.98 -0.05 -32.17 16 19 C -0.17 -6.05 5.47 -20.09 -0.11 -6.16 16 20 C -0.10 -2.24 7.35 22.30 0.16 -2.07 16 21 C -0.12 -2.16 10.00 22.09 0.22 -1.94 16 22 C 0.11 2.28 7.27 39.19 0.28 2.57 16 23 N -0.58 -7.56 6.05 -187.49 -1.13 -8.70 16 24 H 0.44 2.01 8.96 -92.70 -0.83 1.18 16 25 C 0.08 1.06 11.81 82.99 0.98 2.04 16 26 C -0.24 -5.60 11.09 23.52 0.26 -5.34 16 27 C -0.15 -4.42 6.36 -20.21 -0.13 -4.55 16 28 C -0.04 -1.46 9.64 22.74 0.22 -1.24 16 29 C 0.14 6.21 3.11 45.38 0.14 6.35 16 30 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 31 C 0.18 10.58 4.13 86.54 0.36 10.94 16 32 H 0.24 16.28 8.31 -92.71 -0.77 15.51 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.02 0.89 6.69 -2.39 -0.02 0.87 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.64 8.10 -2.38 -0.02 1.62 16 37 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.05 1.20 7.00 -2.39 -0.02 1.18 16 39 H 0.10 1.57 6.65 -2.39 -0.02 1.56 16 40 H 0.10 2.21 4.85 -2.39 -0.01 2.20 16 41 H 0.19 3.01 3.73 -3.26 -0.01 3.00 16 42 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 45 H 0.09 4.09 7.86 -2.91 -0.02 4.07 16 46 H 0.00 -0.31 7.28 -2.38 -0.02 -0.33 16 47 H 0.04 2.47 4.71 -2.39 -0.01 2.46 16 Total: -1.00 -97.37 358.12 1.90 -95.46 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.19 Total: 13.10 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.54 Total: 7.40 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -5.80 Total: -135.96 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.05 Total: -32.17 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -97.37 1.90 -95.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050128013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.811 kcal (2) G-P(sol) polarization free energy of solvation -97.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds