Wall clock time and date at job start Tue Mar 31 2020 23:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48495 * 109.46926 * 273.80047 * 3 2 1 5 5 H 1.48504 * 109.46988 * 33.80286 * 3 2 1 6 6 H 1.48507 * 109.46970 * 153.80076 * 3 2 1 7 7 C 1.38809 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00324 * 339.47520 * 7 2 1 9 9 N 1.36936 * 120.00251 * 159.20087 * 7 2 1 10 10 C 1.46889 * 120.46121 * 332.22344 * 9 7 2 11 11 C 1.52861 * 109.01399 * 235.48653 * 10 9 7 12 12 C 1.52667 * 109.17751 * 307.81736 * 11 10 9 13 13 C 1.53487 * 113.62183 * 188.99131 * 12 11 10 14 14 N 1.47673 * 85.98717 * 137.71004 * 13 12 11 15 15 C 1.34774 * 134.45868 * 155.66181 * 14 13 12 16 16 O 1.21672 * 120.00145 * 180.02562 * 15 14 13 17 17 C 1.46913 * 120.00000 * 0.02684 * 15 14 13 18 18 C 1.36375 * 126.76572 * 359.68783 * 17 15 14 19 19 N 1.35476 * 109.76861 * 179.88921 * 18 17 15 20 20 H 0.96997 * 124.78848 * 180.15611 * 19 18 17 21 21 C 1.37966 * 110.42200 * 0.38856 * 19 18 17 22 22 C 1.39129 * 133.18454 * 179.80805 * 21 19 18 23 23 C 1.37762 * 119.92676 * 179.97438 * 22 21 19 24 24 C 1.38755 * 120.63454 * 359.97438 * 23 22 21 25 25 C 1.37755 * 120.30253 * 0.03490 * 24 23 22 26 26 C 1.39273 * 119.67163 * 359.93562 * 25 24 23 27 27 C 1.47670 * 91.08564 * 335.68079 * 14 13 12 28 28 C 1.52672 * 113.18768 * 57.45937 * 12 11 10 29 29 C 1.46877 * 120.47030 * 152.49526 * 9 7 2 30 30 H 0.97006 * 120.00302 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58860 * 355.30874 * 10 9 7 32 32 H 1.08998 * 109.58980 * 115.74662 * 10 9 7 33 33 H 1.09000 * 109.60736 * 187.84083 * 11 10 9 34 34 H 1.08997 * 109.44503 * 67.70075 * 11 10 9 35 35 H 1.08996 * 113.78989 * 251.97385 * 13 12 11 36 36 H 1.08999 * 113.78631 * 23.44643 * 13 12 11 37 37 H 1.08004 * 125.11557 * 0.02562 * 18 17 15 38 38 H 1.07996 * 120.03489 * 359.93169 * 22 21 19 39 39 H 1.07999 * 119.68422 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.84660 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.16328 * 180.02562 * 25 24 23 42 42 H 1.09004 * 113.79090 * 270.04796 * 27 14 13 43 43 H 1.08997 * 113.89726 * 138.59531 * 27 14 13 44 44 H 1.08995 * 109.53421 * 182.51763 * 28 12 11 45 45 H 1.08999 * 109.58868 * 62.33607 * 28 12 11 46 46 H 1.08996 * 109.59085 * 244.25512 * 29 9 7 47 47 H 1.08997 * 109.59172 * 4.69060 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4173 2.0928 -1.3970 5 1 1.4901 2.6281 0.7789 6 1 3.5857 1.4182 0.6182 7 6 2.0102 -1.2021 0.0005 8 1 1.5216 -2.1077 0.3289 9 7 3.3126 -1.2411 -0.4205 10 6 3.8079 -0.2653 -1.4005 11 6 4.4086 -1.0148 -2.5896 12 6 5.4268 -2.0314 -2.0793 13 6 6.2513 -2.6890 -3.1944 14 7 7.4114 -2.5140 -2.2975 15 6 8.6040 -3.1278 -2.1662 16 8 9.3869 -2.7594 -1.3108 17 6 8.9588 -4.2418 -3.0559 18 6 8.1896 -4.7683 -4.0513 19 7 8.8537 -5.7825 -4.6559 20 1 8.5081 -6.3079 -5.3944 21 6 10.0891 -5.9661 -4.0696 22 6 11.1327 -6.8551 -4.3064 23 6 12.2740 -6.7958 -3.5372 24 6 12.3960 -5.8550 -2.5245 25 6 11.3736 -4.9663 -2.2745 26 6 10.2143 -5.0146 -3.0449 27 6 6.7408 -1.3973 -1.6019 28 6 4.8345 -3.0291 -1.0869 29 6 4.2324 -2.2626 0.0968 30 1 -0.4851 0.8401 -0.0004 31 1 2.9830 0.3593 -1.7432 32 1 4.5744 0.3581 -0.9402 33 1 4.9024 -0.3076 -3.2561 34 1 3.6161 -1.5325 -3.1301 35 1 5.9906 -3.7313 -3.3777 36 1 6.3080 -2.0961 -4.1072 37 1 7.2006 -4.4265 -4.3189 38 1 11.0479 -7.5914 -5.0919 39 1 13.0816 -7.4881 -3.7241 40 1 13.2966 -5.8196 -1.9295 41 1 11.4711 -4.2348 -1.4860 42 1 6.9429 -0.4206 -2.0416 43 1 6.8680 -1.4113 -0.5195 44 1 5.6187 -3.6958 -0.7285 45 1 4.0555 -3.6132 -1.5769 46 1 5.0294 -1.7829 0.6648 47 1 3.6872 -2.9533 0.7400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050583867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:54 Heat of formation + Delta-G solvation = 92.343685 kcal Electronic energy + Delta-G solvation = -29168.225424 eV Core-core repulsion = 25318.461975 eV Total energy + Delta-G solvation = -3849.763449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.72430 -40.60179 -38.07894 -37.19149 -36.10648 -32.60776 -32.18842 -30.92008 -30.48641 -29.78464 -29.32739 -27.17397 -26.28987 -24.12820 -23.18834 -23.06326 -22.36934 -21.94106 -20.96179 -19.15313 -18.25026 -17.96756 -17.02185 -16.63933 -16.18799 -15.85332 -15.59853 -15.46480 -15.05825 -14.89011 -14.29178 -14.21411 -13.99730 -13.89588 -13.62993 -13.45713 -13.18018 -13.01451 -12.77127 -12.34086 -12.17166 -11.99519 -11.93951 -11.85784 -11.73081 -11.43815 -11.22868 -10.82744 -10.58441 -10.48390 -10.08072 -9.96866 -9.96344 -9.92795 -9.57491 -9.38684 -8.65496 -8.59678 -8.58160 -8.01902 -6.97790 -5.96001 -3.31810 0.74605 1.30219 1.83496 2.64446 2.86942 3.30393 3.34305 3.48837 3.51732 3.76072 4.34401 4.40349 4.44620 4.49691 4.52137 4.83770 4.87384 4.91478 4.95427 5.02766 5.14646 5.24665 5.31323 5.33742 5.35216 5.42500 5.43966 5.48411 5.75561 5.82612 5.84215 5.88348 6.00410 6.03188 6.13872 6.15098 6.25217 6.27985 6.33493 6.38918 6.42134 6.46395 6.60097 6.64882 6.66499 6.83217 6.90896 7.05094 7.79221 7.96254 8.31670 8.32149 8.93867 9.71481 10.08931 11.19954 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.002424 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.934105 B =11546.616666 C =11833.550738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.127 3.873 11 C -0.120 4.120 12 C -0.075 4.075 13 C 0.097 3.903 14 N -0.638 5.638 15 C 0.608 3.392 16 O -0.547 6.547 17 C -0.218 4.218 18 C 0.102 3.898 19 N -0.581 5.581 20 H 0.420 0.580 21 C 0.084 3.916 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.062 4.062 26 C -0.063 4.063 27 C 0.118 3.882 28 C -0.109 4.109 29 C 0.150 3.850 30 H 0.262 0.738 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.183 0.817 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.043 -12.741 -13.009 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.328 5.328 10 C 0.002 3.998 11 C -0.160 4.160 12 C -0.076 4.076 13 C -0.026 4.026 14 N -0.373 5.373 15 C 0.400 3.600 16 O -0.425 6.425 17 C -0.228 4.228 18 C -0.030 4.030 19 N -0.182 5.182 20 H 0.257 0.743 21 C -0.021 4.021 22 C -0.149 4.149 23 C -0.120 4.120 24 C -0.162 4.162 25 C -0.081 4.081 26 C -0.068 4.068 27 C -0.004 4.004 28 C -0.148 4.148 29 C 0.024 3.976 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.200 0.800 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 20.453 -12.618 -12.574 27.123 hybrid contribution 0.148 0.747 -0.566 0.949 sum 20.601 -11.871 -13.141 27.166 Atomic orbital electron populations 1.69838 1.05762 1.26537 1.53024 1.25284 0.95211 0.97595 0.99514 0.86958 0.80217 0.84668 0.76916 1.21678 1.23226 1.19428 1.18917 0.85055 0.94693 1.40089 0.89775 1.44312 1.08768 1.33880 1.45852 1.21226 0.97389 0.92111 0.89112 1.21885 0.97672 0.97337 0.99121 1.21984 0.93613 0.96758 0.95230 1.23557 0.82925 1.01068 0.95061 1.49842 1.15187 1.35275 1.36950 1.16835 0.79188 0.81157 0.82820 1.90764 1.48939 1.66576 1.36262 1.20033 0.96375 1.03246 1.03187 1.22553 0.97624 0.89162 0.93675 1.41572 1.14100 1.30779 1.31747 0.74306 1.18275 0.87595 0.99589 0.96645 1.20001 0.92639 0.99760 1.02545 1.20824 0.96806 0.98771 0.95562 1.20993 0.99237 0.96732 0.99267 1.20740 0.91090 0.98119 0.98112 1.18762 0.94462 0.96279 0.97287 1.23262 0.87879 0.89990 0.99222 1.21762 0.99296 0.96569 0.97215 1.20906 0.92477 0.91195 0.93038 0.92797 0.90866 0.95662 0.92315 0.90961 0.90254 0.89518 0.80034 0.86136 0.85629 0.85732 0.84874 0.89937 0.89791 0.92389 0.91306 0.95834 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.36 13.97 55.49 0.78 -26.58 16 2 C 0.02 0.64 5.22 -17.43 -0.09 0.55 16 3 Si 0.88 21.90 24.38 -169.99 -4.14 17.76 16 4 H -0.29 -6.86 6.65 56.52 0.38 -6.48 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.59 6.65 56.52 0.38 -6.22 16 7 C -0.26 -7.01 10.01 -15.06 -0.15 -7.16 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 9 N -0.60 -13.62 2.74 -172.50 -0.47 -14.10 16 10 C 0.13 2.57 4.06 -3.90 -0.02 2.56 16 11 C -0.12 -1.83 5.24 -26.97 -0.14 -1.98 16 12 C -0.07 -1.02 0.77 -154.42 -0.12 -1.14 16 13 C 0.10 1.01 6.28 -3.16 -0.02 0.99 16 14 N -0.64 -8.60 3.44 -181.66 -0.63 -9.22 16 15 C 0.61 9.43 8.03 -12.75 -0.10 9.33 16 16 O -0.55 -10.41 16.89 5.21 0.09 -10.32 16 17 C -0.22 -2.83 6.27 -103.31 -0.65 -3.48 16 18 C 0.10 0.93 10.97 -16.61 -0.18 0.75 16 19 N -0.58 -4.46 5.99 -10.48 -0.06 -4.52 16 20 H 0.42 1.67 8.96 -40.82 -0.37 1.31 16 21 C 0.08 0.86 7.26 -83.96 -0.61 0.25 16 22 C -0.13 -1.09 10.07 -39.43 -0.40 -1.49 16 23 C -0.10 -0.84 10.01 -39.56 -0.40 -1.23 16 24 C -0.14 -1.39 10.03 -39.57 -0.40 -1.79 16 25 C -0.06 -0.77 9.85 -39.37 -0.39 -1.16 16 26 C -0.06 -0.82 6.27 -104.96 -0.66 -1.48 16 27 C 0.12 1.68 7.62 -3.14 -0.02 1.65 16 28 C -0.11 -1.65 5.22 -26.72 -0.14 -1.79 16 29 C 0.15 2.82 6.38 -3.66 -0.02 2.80 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.07 1.65 4.39 -51.93 -0.23 1.42 16 32 H 0.03 0.51 7.12 -51.93 -0.37 0.14 16 33 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 0.67 6.22 -51.93 -0.32 0.35 16 36 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.18 1.15 4.98 -52.48 -0.26 0.89 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.79 7.45 -52.48 -0.39 1.40 16 42 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 43 H 0.08 1.32 7.41 -51.93 -0.38 0.93 16 44 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.44 7.49 -51.93 -0.39 0.06 16 47 H 0.06 1.25 7.92 -51.93 -0.41 0.83 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -34.74 368.44 -9.92 -44.65 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.53 Total: 0.60 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -4.50 Total: -3.82 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.39 Total: -54.42 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.74 -9.92 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050583867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.996 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds