Wall clock time and date at job start Tue Mar 31 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00334 * 2 1 4 4 H 1.48496 * 109.47078 * 275.56842 * 3 2 1 5 5 H 1.48501 * 109.47129 * 35.56872 * 3 2 1 6 6 H 1.48499 * 109.46935 * 155.56923 * 3 2 1 7 7 C 1.38819 * 119.99380 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99936 * 336.34614 * 7 2 1 9 9 N 1.36937 * 119.99576 * 156.35234 * 7 2 1 10 10 C 1.50170 * 120.53427 * 140.24674 * 9 7 2 11 11 C 1.46233 * 107.58902 * 109.59420 * 10 9 7 12 12 C 1.52530 * 114.27699 * 58.37375 * 11 10 9 13 13 C 1.50122 * 105.41356 * 270.59167 * 12 11 10 14 14 H 1.08996 * 109.21023 * 337.33999 * 13 12 11 15 15 N 1.46497 * 109.20760 * 217.98095 * 13 12 11 16 16 C 1.34784 * 120.00033 * 155.00036 * 15 13 12 17 17 O 1.21562 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.47768 * 120.00265 * 179.97438 * 16 15 13 19 19 C 1.40629 * 119.80301 * 0.02562 * 18 16 15 20 20 C 1.35702 * 120.92230 * 179.97438 * 19 18 16 21 21 C 1.40757 * 120.11188 * 359.97351 * 20 19 18 22 22 N 1.33646 * 120.84131 * 180.02562 * 21 20 19 23 23 C 1.31124 * 121.39423 * 179.97438 * 22 21 20 24 24 C 1.39312 * 121.77430 * 359.97438 * 23 22 21 25 25 C 1.36576 * 119.90156 * 0.02562 * 24 23 22 26 26 C 1.40893 * 118.15713 * 359.97438 * 25 24 23 27 27 C 1.38549 * 119.80435 * 179.72400 * 18 16 15 28 28 C 1.54850 * 110.81576 * 97.68453 * 13 12 11 29 29 C 1.43400 * 120.52046 * 320.12718 * 9 7 2 30 30 H 0.97005 * 119.99711 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.84536 * 350.05424 * 10 9 7 32 32 H 1.09002 * 109.84319 * 229.13474 * 10 9 7 33 33 H 1.08998 * 108.52482 * 179.61282 * 11 10 9 34 34 H 1.08995 * 108.52492 * 297.28938 * 11 10 9 35 35 H 1.09002 * 110.24810 * 29.56864 * 12 11 10 36 36 H 1.09001 * 110.24899 * 151.47493 * 12 11 10 37 37 H 0.96995 * 120.00140 * 335.00084 * 15 13 12 38 38 H 1.08003 * 119.53848 * 359.96447 * 19 18 16 39 39 H 1.07999 * 119.94399 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.11417 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.04786 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.91850 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.29565 * 0.02893 * 27 18 16 44 44 H 1.09002 * 109.35652 * 81.33807 * 28 13 12 45 45 H 1.09002 * 109.35903 * 201.06399 * 28 13 12 46 46 H 1.09006 * 108.12249 * 149.83574 * 29 9 7 47 47 H 1.09001 * 107.96898 * 33.18591 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3801 2.1142 -1.3934 5 1 1.5116 2.6158 0.8144 6 1 3.6017 1.4089 0.5791 7 6 2.0102 -1.2023 -0.0005 8 1 1.5381 -2.0984 0.3743 9 7 3.2933 -1.2519 -0.4763 10 6 4.3316 -2.0877 0.2154 11 6 4.6348 -3.2241 -0.6535 12 6 5.1392 -2.8365 -2.0398 13 6 3.9090 -2.7079 -2.8905 14 1 3.1019 -3.2885 -2.4439 15 7 4.1928 -3.2282 -4.2302 16 6 3.1879 -3.6895 -5.0009 17 8 2.0459 -3.6734 -4.5843 18 6 3.4740 -4.2138 -6.3525 19 6 4.7965 -4.2300 -6.8303 20 6 5.0851 -4.7068 -8.0676 21 6 4.0557 -5.1954 -8.8939 22 7 4.3235 -5.6688 -10.1147 23 6 3.3731 -6.1270 -10.8933 24 6 2.0396 -6.1449 -10.4905 25 6 1.6953 -5.6760 -9.2548 26 6 2.7193 -5.1845 -8.4211 27 6 2.4386 -4.6923 -7.1389 28 6 3.4697 -1.2272 -3.0025 29 6 3.6661 -0.5085 -1.6445 30 1 -0.4850 0.8401 0.0004 31 1 3.9439 -2.4445 1.1696 32 1 5.2327 -1.4968 0.3799 33 1 5.3934 -3.8383 -0.1683 34 1 3.7306 -3.8212 -0.7709 35 1 5.6689 -1.8848 -1.9961 36 1 5.7936 -3.6139 -2.4342 37 1 5.1039 -3.2407 -4.5627 38 1 5.5936 -3.8576 -6.2039 39 1 6.1064 -4.7114 -8.4189 40 1 3.6310 -6.5006 -11.8733 41 1 1.2793 -6.5290 -11.1543 42 1 0.6668 -5.6825 -8.9256 43 1 1.4241 -4.6832 -6.7687 44 1 4.0689 -0.7293 -3.7649 45 1 2.4176 -1.1828 -3.2838 46 1 4.7179 -0.2375 -1.5525 47 1 3.0808 0.4109 -1.6590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052677435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:23 Heat of formation + Delta-G solvation = 52.106205 kcal Electronic energy + Delta-G solvation = -28818.413542 eV Core-core repulsion = 24966.905265 eV Total energy + Delta-G solvation = -3851.508277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.19308 -39.83895 -38.13293 -36.83177 -34.85025 -33.83537 -32.93463 -31.55951 -31.17597 -30.40416 -30.10566 -26.44544 -25.28776 -24.17718 -24.02946 -23.16157 -22.35521 -21.07374 -20.26594 -19.51426 -18.47216 -17.97906 -17.22734 -16.51310 -16.14301 -15.95747 -15.31801 -14.95986 -14.77606 -14.63600 -14.42644 -14.27930 -14.06939 -13.90350 -13.72210 -13.41047 -13.23629 -12.98759 -12.59733 -12.34539 -12.02626 -11.92023 -11.85637 -11.78686 -11.71914 -10.95056 -10.92619 -10.84141 -10.51841 -10.42600 -10.26039 -10.02400 -9.88051 -9.72094 -9.65626 -9.53072 -9.16450 -8.76969 -8.56654 -8.39193 -6.71959 -5.95611 -3.38698 -0.06688 0.34205 1.60627 2.21828 3.24290 3.29181 3.35448 3.49041 3.54930 3.83717 3.88996 4.24622 4.33475 4.50282 4.56798 4.59297 4.69178 4.79068 4.87153 4.91603 5.12222 5.16895 5.31673 5.40487 5.41378 5.47460 5.58304 5.60250 5.69398 5.83004 5.89224 5.92133 5.98381 6.01563 6.12815 6.15769 6.23073 6.31713 6.37871 6.41704 6.58572 6.64778 6.72530 6.80819 6.90877 6.93459 7.02018 7.51937 7.66698 8.13352 8.37010 8.41987 9.05540 9.75759 10.19681 11.19751 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.002474 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.142284 B =11315.661254 C =11967.590844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.040 3.960 3 Si 0.876 3.124 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.267 4.267 8 H 0.075 0.925 9 N -0.600 5.600 10 C 0.135 3.865 11 C -0.131 4.131 12 C -0.120 4.120 13 C 0.155 3.845 14 H 0.097 0.903 15 N -0.722 5.722 16 C 0.549 3.451 17 O -0.523 6.523 18 C -0.128 4.128 19 C -0.074 4.074 20 C -0.099 4.099 21 C 0.140 3.860 22 N -0.479 5.479 23 C 0.138 3.862 24 C -0.182 4.182 25 C -0.044 4.044 26 C -0.113 4.113 27 C -0.027 4.027 28 C -0.148 4.148 29 C 0.153 3.847 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.392 0.608 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.029 0.971 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.409 -11.910 -19.350 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.092 0.908 9 N -0.323 5.323 10 C 0.011 3.989 11 C -0.170 4.170 12 C -0.158 4.158 13 C 0.052 3.948 14 H 0.115 0.885 15 N -0.374 5.374 16 C 0.335 3.665 17 O -0.400 6.400 18 C -0.131 4.131 19 C -0.094 4.094 20 C -0.118 4.118 21 C 0.019 3.981 22 N -0.187 5.187 23 C -0.035 4.035 24 C -0.202 4.202 25 C -0.070 4.070 26 C -0.115 4.115 27 C -0.047 4.047 28 C -0.190 4.190 29 C 0.025 3.975 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.047 0.953 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.330 -11.748 -19.143 25.156 hybrid contribution -0.116 0.999 -0.117 1.013 sum 11.214 -10.749 -19.260 24.743 Atomic orbital electron populations 1.69910 1.06087 1.26693 1.50844 1.25538 0.95001 0.97823 0.97775 0.86906 0.80721 0.84804 0.76927 1.21444 1.22965 1.19451 1.18690 0.86944 0.94202 1.39747 0.90771 1.44192 1.07808 1.55816 1.24492 1.20450 0.91734 0.91546 0.95125 1.20867 1.00568 1.00159 0.95397 1.21311 0.96564 1.01621 0.96306 1.21246 0.98094 0.95838 0.79593 0.88538 1.46387 1.09605 1.63510 1.17857 1.18181 0.85559 0.78223 0.84507 1.90857 1.20651 1.55235 1.73238 1.20114 0.94057 1.03283 0.95631 1.20970 0.95547 0.97200 0.95711 1.20658 0.98972 0.99043 0.93133 1.18999 0.91552 0.96152 0.91405 1.68070 1.36328 1.10425 1.03883 1.23037 0.88806 0.92894 0.98724 1.21909 0.98206 1.02521 0.97567 1.21616 0.99340 0.92972 0.93115 1.18832 0.94471 1.02396 0.95802 1.21510 1.00097 0.92099 0.91000 1.23223 1.01834 0.94326 0.99629 1.20629 0.96837 0.94066 0.86017 0.92754 0.91374 0.95090 0.93324 0.91626 0.90868 0.91982 0.77320 0.84874 0.84189 0.82255 0.84252 0.83888 0.83510 0.93121 0.91527 0.95255 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.80 13.97 55.49 0.78 -27.02 16 2 C 0.04 1.16 5.28 -17.43 -0.09 1.07 16 3 Si 0.88 22.47 25.27 -169.99 -4.29 18.17 16 4 H -0.29 -7.21 6.74 56.52 0.38 -6.83 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.27 -7.49 9.92 -15.06 -0.15 -7.64 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 N -0.60 -13.99 2.14 -175.10 -0.37 -14.36 16 10 C 0.14 2.54 6.11 -5.21 -0.03 2.51 16 11 C -0.13 -2.07 5.21 -30.19 -0.16 -2.23 16 12 C -0.12 -1.69 5.33 -28.40 -0.15 -1.84 16 13 C 0.16 2.61 2.22 -68.39 -0.15 2.46 16 14 H 0.10 2.01 6.26 -51.93 -0.33 1.68 16 15 N -0.72 -9.92 4.92 -55.22 -0.27 -10.19 16 16 C 0.55 8.59 7.72 -12.36 -0.10 8.49 16 17 O -0.52 -10.65 15.97 5.31 0.08 -10.57 16 18 C -0.13 -1.59 5.87 -104.98 -0.62 -2.20 16 19 C -0.07 -0.71 9.44 -39.59 -0.37 -1.09 16 20 C -0.10 -0.97 9.95 -39.54 -0.39 -1.36 16 21 C 0.14 1.56 6.61 -84.78 -0.56 1.00 16 22 N -0.48 -5.07 10.33 -10.92 -0.11 -5.18 16 23 C 0.14 1.06 11.15 -17.45 -0.19 0.87 16 24 C -0.18 -1.23 10.03 -39.78 -0.40 -1.63 16 25 C -0.04 -0.37 9.89 -39.18 -0.39 -0.76 16 26 C -0.11 -1.22 5.74 -106.82 -0.61 -1.84 16 27 C -0.03 -0.33 9.35 -38.74 -0.36 -0.69 16 28 C -0.15 -2.88 5.98 -24.75 -0.15 -3.03 16 29 C 0.15 3.30 4.21 -4.68 -0.02 3.28 16 30 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.07 1.30 7.99 -51.93 -0.42 0.88 16 32 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.18 6.92 -51.93 -0.36 0.82 16 35 H 0.07 1.02 6.29 -51.93 -0.33 0.69 16 36 H 0.06 0.71 7.86 -51.93 -0.41 0.30 16 37 H 0.39 3.91 6.47 -40.82 -0.26 3.65 16 38 H 0.13 0.91 6.35 -52.48 -0.33 0.58 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.15 1.76 7.62 -52.49 -0.40 1.37 16 44 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 45 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.03 0.56 6.89 -51.93 -0.36 0.20 16 47 H 0.04 1.05 3.39 -51.93 -0.18 0.88 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -35.30 370.70 -9.83 -45.13 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.32 Total: 3.07 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -4.90 Total: -4.63 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.02 Total: -56.76 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.29 Total: 18.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.30 -9.83 -45.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052677435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.237 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds