Wall clock time and date at job start Tue Mar 31 2020 22:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00334 * 2 1 4 4 H 1.48496 * 109.47078 * 275.56842 * 3 2 1 5 5 H 1.48501 * 109.47129 * 35.56872 * 3 2 1 6 6 H 1.48499 * 109.46935 * 155.56923 * 3 2 1 7 7 C 1.38819 * 119.99380 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99936 * 336.34614 * 7 2 1 9 9 N 1.36937 * 119.99576 * 156.35234 * 7 2 1 10 10 C 1.50170 * 120.53427 * 140.24674 * 9 7 2 11 11 C 1.46233 * 107.58902 * 109.59420 * 10 9 7 12 12 C 1.52530 * 114.27699 * 58.37375 * 11 10 9 13 13 C 1.50122 * 105.41356 * 270.59167 * 12 11 10 14 14 H 1.08996 * 109.21023 * 337.33999 * 13 12 11 15 15 N 1.46497 * 109.20760 * 217.98095 * 13 12 11 16 16 C 1.34784 * 120.00033 * 155.00036 * 15 13 12 17 17 O 1.21562 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.47768 * 120.00265 * 179.97438 * 16 15 13 19 19 C 1.40629 * 119.80301 * 0.02562 * 18 16 15 20 20 C 1.35702 * 120.92230 * 179.97438 * 19 18 16 21 21 C 1.40757 * 120.11188 * 359.97351 * 20 19 18 22 22 N 1.33646 * 120.84131 * 180.02562 * 21 20 19 23 23 C 1.31124 * 121.39423 * 179.97438 * 22 21 20 24 24 C 1.39312 * 121.77430 * 359.97438 * 23 22 21 25 25 C 1.36576 * 119.90156 * 0.02562 * 24 23 22 26 26 C 1.40893 * 118.15713 * 359.97438 * 25 24 23 27 27 C 1.38549 * 119.80435 * 179.72400 * 18 16 15 28 28 C 1.54850 * 110.81576 * 97.68453 * 13 12 11 29 29 C 1.43400 * 120.52046 * 320.12718 * 9 7 2 30 30 H 0.97005 * 119.99711 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.84536 * 350.05424 * 10 9 7 32 32 H 1.09002 * 109.84319 * 229.13474 * 10 9 7 33 33 H 1.08998 * 108.52482 * 179.61282 * 11 10 9 34 34 H 1.08995 * 108.52492 * 297.28938 * 11 10 9 35 35 H 1.09002 * 110.24810 * 29.56864 * 12 11 10 36 36 H 1.09001 * 110.24899 * 151.47493 * 12 11 10 37 37 H 0.96995 * 120.00140 * 335.00084 * 15 13 12 38 38 H 1.08003 * 119.53848 * 359.96447 * 19 18 16 39 39 H 1.07999 * 119.94399 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.11417 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.04786 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.91850 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.29565 * 0.02893 * 27 18 16 44 44 H 1.09002 * 109.35652 * 81.33807 * 28 13 12 45 45 H 1.09002 * 109.35903 * 201.06399 * 28 13 12 46 46 H 1.09006 * 108.12249 * 149.83574 * 29 9 7 47 47 H 1.09001 * 107.96898 * 33.18591 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3801 2.1142 -1.3934 5 1 1.5116 2.6158 0.8144 6 1 3.6017 1.4089 0.5791 7 6 2.0102 -1.2023 -0.0005 8 1 1.5381 -2.0984 0.3743 9 7 3.2933 -1.2519 -0.4763 10 6 4.3316 -2.0877 0.2154 11 6 4.6348 -3.2241 -0.6535 12 6 5.1392 -2.8365 -2.0398 13 6 3.9090 -2.7079 -2.8905 14 1 3.1019 -3.2885 -2.4439 15 7 4.1928 -3.2282 -4.2302 16 6 3.1879 -3.6895 -5.0009 17 8 2.0459 -3.6734 -4.5843 18 6 3.4740 -4.2138 -6.3525 19 6 4.7965 -4.2300 -6.8303 20 6 5.0851 -4.7068 -8.0676 21 6 4.0557 -5.1954 -8.8939 22 7 4.3235 -5.6688 -10.1147 23 6 3.3731 -6.1270 -10.8933 24 6 2.0396 -6.1449 -10.4905 25 6 1.6953 -5.6760 -9.2548 26 6 2.7193 -5.1845 -8.4211 27 6 2.4386 -4.6923 -7.1389 28 6 3.4697 -1.2272 -3.0025 29 6 3.6661 -0.5085 -1.6445 30 1 -0.4850 0.8401 0.0004 31 1 3.9439 -2.4445 1.1696 32 1 5.2327 -1.4968 0.3799 33 1 5.3934 -3.8383 -0.1683 34 1 3.7306 -3.8212 -0.7709 35 1 5.6689 -1.8848 -1.9961 36 1 5.7936 -3.6139 -2.4342 37 1 5.1039 -3.2407 -4.5627 38 1 5.5936 -3.8576 -6.2039 39 1 6.1064 -4.7114 -8.4189 40 1 3.6310 -6.5006 -11.8733 41 1 1.2793 -6.5290 -11.1543 42 1 0.6668 -5.6825 -8.9256 43 1 1.4241 -4.6832 -6.7687 44 1 4.0689 -0.7293 -3.7649 45 1 2.4176 -1.1828 -3.2838 46 1 4.7179 -0.2375 -1.5525 47 1 3.0808 0.4109 -1.6590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052677435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:22 Heat of formation + Delta-G solvation = 27.880705 kcal Electronic energy + Delta-G solvation = -28819.464039 eV Core-core repulsion = 24966.905265 eV Total energy + Delta-G solvation = -3852.558773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98604 -41.03450 -39.53871 -37.73105 -36.40172 -34.67991 -34.47818 -33.11799 -32.72047 -31.29785 -31.08790 -28.12819 -26.35651 -25.56480 -24.89727 -24.71003 -23.17219 -22.29884 -21.57307 -21.16625 -19.39517 -18.84197 -18.51148 -18.00200 -17.53770 -16.90079 -16.87155 -16.25380 -16.10678 -15.63943 -15.55884 -15.35793 -15.20135 -15.04387 -14.85325 -14.73054 -14.44748 -14.19975 -14.02582 -13.80324 -13.58701 -13.32795 -13.13465 -12.75235 -12.67160 -12.50708 -12.39067 -12.21708 -12.07260 -11.78866 -11.63367 -11.62227 -11.48407 -11.27253 -11.03683 -10.58182 -10.55298 -10.13827 -9.83480 -9.36582 -8.66631 -8.20759 -5.60286 -0.84448 -0.36924 0.83470 1.30767 1.38573 1.39336 1.52154 2.09540 2.27586 2.42765 3.01354 3.05626 3.25086 3.36415 3.52199 3.59665 3.71046 3.85348 3.92946 3.97736 3.99618 4.02367 4.17261 4.27813 4.37264 4.42102 4.48787 4.56332 4.68805 4.75195 4.82043 4.84929 4.89790 4.92741 4.98654 5.00394 5.09741 5.15816 5.17805 5.23381 5.26193 5.38395 5.39964 5.46433 5.58263 5.62112 5.72981 5.96055 6.17783 6.53813 6.84627 7.03329 7.21962 7.65532 8.09530 8.99483 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.002474 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.142284 B =11315.661254 C =11967.590844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.025 4.025 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.248 1.248 7 C -0.255 4.255 8 H 0.027 0.973 9 N -0.613 5.613 10 C 0.133 3.867 11 C -0.128 4.128 12 C -0.108 4.108 13 C 0.165 3.835 14 H 0.045 0.955 15 N -0.704 5.704 16 C 0.547 3.453 17 O -0.586 6.586 18 C -0.143 4.143 19 C -0.068 4.068 20 C -0.099 4.099 21 C 0.124 3.876 22 N -0.504 5.504 23 C 0.140 3.860 24 C -0.170 4.170 25 C -0.059 4.059 26 C -0.130 4.130 27 C -0.038 4.038 28 C -0.142 4.142 29 C 0.146 3.854 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.030 0.970 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.416 0.584 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.196 0.804 41 H 0.176 0.824 42 H 0.158 0.842 43 H 0.132 0.868 44 H 0.084 0.916 45 H 0.012 0.988 46 H 0.072 0.928 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.081 -12.267 -21.841 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.221 4.221 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.237 1.237 6 H -0.172 1.172 7 C -0.385 4.385 8 H 0.045 0.955 9 N -0.337 5.337 10 C 0.011 3.989 11 C -0.167 4.167 12 C -0.146 4.146 13 C 0.061 3.939 14 H 0.064 0.936 15 N -0.356 5.356 16 C 0.335 3.665 17 O -0.467 6.467 18 C -0.146 4.146 19 C -0.088 4.088 20 C -0.117 4.117 21 C 0.003 3.997 22 N -0.212 5.212 23 C -0.032 4.032 24 C -0.189 4.189 25 C -0.085 4.085 26 C -0.132 4.132 27 C -0.058 4.058 28 C -0.184 4.184 29 C 0.018 3.982 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.255 0.745 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.213 0.787 41 H 0.194 0.806 42 H 0.175 0.825 43 H 0.150 0.850 44 H 0.102 0.898 45 H 0.031 0.969 46 H 0.090 0.910 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 16.106 -12.125 -21.653 29.585 hybrid contribution -1.643 0.900 0.482 1.935 sum 14.463 -11.224 -21.171 27.989 Atomic orbital electron populations 1.70067 1.08097 1.27430 1.53937 1.26242 0.95625 1.01775 0.98446 0.85707 0.79807 0.79568 0.77028 1.20767 1.23695 1.17160 1.18536 0.89218 0.92524 1.38221 0.95532 1.44347 1.07028 1.56629 1.25697 1.20666 0.91185 0.92135 0.94926 1.20763 1.00427 0.98954 0.96573 1.21311 0.95269 1.03985 0.94021 1.20910 0.98405 0.93212 0.81353 0.93640 1.46116 1.10537 1.62387 1.16545 1.18744 0.84848 0.77300 0.85598 1.90832 1.23254 1.57836 1.74747 1.19925 0.95781 1.04956 0.93982 1.21139 0.94645 0.96884 0.96147 1.20938 0.99746 0.98209 0.92800 1.19322 0.91861 0.96434 0.92126 1.68142 1.37450 1.11695 1.03934 1.23756 0.88844 0.91027 0.99548 1.22322 0.98827 1.00697 0.97068 1.21927 0.99694 0.93122 0.93727 1.18971 0.95525 1.03177 0.95532 1.21521 0.99579 0.92694 0.91961 1.23124 0.99228 0.96601 0.99450 1.20748 0.98518 0.92863 0.86051 0.92977 0.92678 0.91728 0.89313 0.95073 0.89028 0.87888 0.74474 0.81719 0.82001 0.78748 0.80629 0.82485 0.85034 0.89780 0.96932 0.90984 0.96745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.80 13.97 21.65 0.30 -62.50 16 2 C -0.02 -1.51 5.28 84.86 0.45 -1.06 16 3 Si 0.95 47.69 25.27 68.60 1.73 49.42 16 4 H -0.28 -13.63 6.74 99.48 0.67 -12.96 16 5 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 6 H -0.25 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.25 -15.06 9.92 84.04 0.83 -14.22 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 9 N -0.61 -28.67 2.14 -707.90 -1.51 -30.18 16 10 C 0.13 4.77 6.11 83.58 0.51 5.28 16 11 C -0.13 -3.78 5.21 28.36 0.15 -3.63 16 12 C -0.11 -2.63 5.33 29.51 0.16 -2.47 16 13 C 0.17 5.50 2.22 44.70 0.10 5.60 16 14 H 0.05 2.01 6.26 -2.39 -0.01 2.00 16 15 N -0.70 -18.50 4.92 -446.89 -2.20 -20.70 16 16 C 0.55 17.73 7.72 86.76 0.67 18.40 16 17 O -0.59 -26.04 15.97 -3.91 -0.06 -26.10 16 18 C -0.14 -3.60 5.87 -20.10 -0.12 -3.72 16 19 C -0.07 -1.18 9.44 22.27 0.21 -0.97 16 20 C -0.10 -1.72 9.95 22.30 0.22 -1.49 16 21 C 0.12 2.59 6.61 40.35 0.27 2.85 16 22 N -0.50 -9.55 10.33 -188.45 -1.95 -11.50 16 23 C 0.14 1.74 11.15 85.06 0.95 2.69 16 24 C -0.17 -1.82 10.03 22.14 0.22 -1.60 16 25 C -0.06 -0.93 9.89 22.53 0.22 -0.70 16 26 C -0.13 -2.80 5.74 -21.29 -0.12 -2.92 16 27 C -0.04 -0.95 9.35 22.82 0.21 -0.74 16 28 C -0.14 -5.52 5.98 31.87 0.19 -5.33 16 29 C 0.15 6.11 4.21 87.60 0.37 6.48 16 30 H 0.26 16.30 8.31 -92.70 -0.77 15.53 16 31 H 0.05 2.08 7.99 -2.39 -0.02 2.06 16 32 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.13 6.92 -2.39 -0.02 1.12 16 35 H 0.09 1.99 6.29 -2.39 -0.01 1.98 16 36 H 0.10 1.74 7.86 -2.39 -0.02 1.72 16 37 H 0.42 6.81 6.47 -92.71 -0.60 6.21 16 38 H 0.17 1.62 6.35 -2.91 -0.02 1.60 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 41 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.13 3.59 7.62 -2.91 -0.02 3.56 16 44 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 2.43 6.89 -2.38 -0.02 2.41 16 47 H 0.01 0.70 3.39 -2.39 -0.01 0.69 16 Total: -1.00 -86.93 370.70 2.17 -84.76 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.37 Total: 14.37 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 5.49 Total: 2.43 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -5.36 Total: -124.88 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.73 Total: 49.42 kcal Total: -86.93 2.17 -84.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052677435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.641 kcal (2) G-P(sol) polarization free energy of solvation -86.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds