Wall clock time and date at job start Tue Mar 31 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47477 * 239.99808 * 3 2 1 5 5 H 1.48507 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47079 * 119.99573 * 3 2 1 7 7 C 1.38806 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99882 * 196.75195 * 7 2 1 9 9 N 1.36935 * 120.00218 * 17.02219 * 7 2 1 10 10 C 1.44577 * 118.64603 * 206.97284 * 9 7 2 11 11 C 1.54864 * 109.59997 * 270.70802 * 10 9 7 12 12 C 1.47091 * 110.32048 * 288.73152 * 11 10 9 13 13 C 1.52567 * 114.32574 * 62.80715 * 12 11 10 14 14 H 1.09003 * 109.48898 * 34.97078 * 13 12 11 15 15 N 1.46503 * 109.49043 * 155.01660 * 13 12 11 16 16 C 1.34770 * 119.99953 * 204.99535 * 15 13 12 17 17 O 1.21561 * 120.00285 * 0.02562 * 16 15 13 18 18 C 1.47772 * 119.99879 * 180.02562 * 16 15 13 19 19 C 1.40628 * 119.80487 * 359.73181 * 18 16 15 20 20 C 1.35704 * 120.92369 * 179.73067 * 19 18 16 21 21 C 1.40755 * 120.10795 * 0.51329 * 20 19 18 22 22 N 1.33650 * 120.83237 * 179.76559 * 21 20 19 23 23 C 1.31119 * 121.39895 * 180.02562 * 22 21 20 24 24 C 1.39316 * 121.76669 * 359.97438 * 23 22 21 25 25 C 1.36577 * 119.90469 * 0.02562 * 24 23 22 26 26 C 1.40894 * 118.16045 * 359.97438 * 25 24 23 27 27 C 1.38550 * 119.80157 * 180.02562 * 18 16 15 28 28 C 1.50883 * 109.35822 * 274.98114 * 13 12 11 29 29 C 1.47601 * 118.64052 * 26.70840 * 9 7 2 30 30 H 0.97003 * 119.99916 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.44645 * 30.74793 * 10 9 7 32 32 H 1.09003 * 109.44613 * 150.66770 * 10 9 7 33 33 H 1.08993 * 109.32892 * 48.99738 * 11 10 9 34 34 H 1.08999 * 109.32229 * 168.64462 * 11 10 9 35 35 H 1.09007 * 108.50863 * 184.05938 * 12 11 10 36 36 H 1.08994 * 108.51698 * 301.54636 * 12 11 10 37 37 H 0.96997 * 119.99679 * 25.00024 * 15 13 12 38 38 H 1.08000 * 119.53662 * 359.97438 * 19 18 16 39 39 H 1.07991 * 119.94571 * 180.28276 * 20 19 18 40 40 H 1.07992 * 119.11641 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.04911 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.92029 * 180.02562 * 25 24 23 43 43 H 1.07990 * 120.30441 * 0.02581 * 27 18 16 44 44 H 1.08992 * 109.36597 * 212.07718 * 28 13 12 45 45 H 1.09004 * 109.36465 * 331.70166 * 28 13 12 46 46 H 1.08998 * 108.95194 * 258.57681 * 29 9 7 47 47 H 1.09003 * 108.94596 * 17.20450 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0559 -1.2218 0.2702 9 7 1.3706 -2.3622 -0.3461 10 6 1.8588 -3.6110 0.1946 11 6 2.9372 -4.1992 -0.7485 12 6 2.3176 -4.6931 -1.9878 13 6 1.6343 -3.6140 -2.8222 14 1 2.1940 -2.6823 -2.7405 15 7 1.5891 -4.0358 -4.2245 16 6 1.5138 -3.1129 -5.2037 17 8 1.4838 -1.9304 -4.9234 18 6 1.4678 -3.5384 -6.6180 19 6 1.5084 -4.9072 -6.9379 20 6 1.4620 -5.3235 -8.2287 21 6 1.3828 -4.3818 -9.2718 22 7 1.3410 -4.7754 -10.5483 23 6 1.2676 -3.9079 -11.5287 24 6 1.2290 -2.5355 -11.2922 25 6 1.2682 -2.0639 -10.0111 26 6 1.3470 -2.9992 -8.9603 27 6 1.3909 -2.5861 -7.6214 28 6 0.2291 -3.4040 -2.3142 29 6 0.2075 -2.2854 -1.2516 30 1 -0.4850 0.8401 -0.0004 31 1 2.2938 -3.4352 1.1784 32 1 1.0319 -4.3155 0.2844 33 1 3.6643 -3.4247 -0.9925 34 1 3.4434 -5.0242 -0.2474 35 1 3.0894 -5.1645 -2.5965 36 1 1.5775 -5.4496 -1.7271 37 1 1.6134 -4.9794 -4.4481 38 1 1.5736 -5.6375 -6.1449 39 1 1.4897 -6.3788 -8.4561 40 1 1.2363 -4.2668 -12.5467 41 1 1.1681 -1.8454 -12.1208 42 1 1.2388 -1.0033 -9.8089 43 1 1.3650 -1.5351 -7.3744 44 1 -0.4179 -3.1252 -3.1458 45 1 -0.1363 -4.3293 -1.8687 46 1 -0.7058 -2.3696 -0.6627 47 1 0.2141 -1.3186 -1.7550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052677440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:26 Heat of formation + Delta-G solvation = 21.688946 kcal Electronic energy + Delta-G solvation = -28926.661790 eV Core-core repulsion = 25073.834522 eV Total energy + Delta-G solvation = -3852.827268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.98016 -41.00321 -39.30396 -37.70875 -36.37972 -34.63749 -34.43335 -32.80256 -32.50571 -31.28461 -31.08087 -27.89973 -26.34068 -25.25988 -24.94085 -24.81042 -23.16121 -22.11175 -21.56620 -21.01884 -19.35981 -18.82163 -18.55410 -17.97889 -17.25800 -16.87528 -16.73897 -16.23305 -15.92234 -15.66137 -15.54350 -15.27387 -15.24674 -15.02957 -14.78176 -14.45566 -14.37355 -14.02531 -14.00653 -13.63179 -13.31329 -13.13019 -13.01896 -12.72805 -12.70628 -12.54850 -12.46705 -12.15820 -12.03095 -11.75083 -11.62869 -11.51323 -11.40355 -11.34331 -11.01951 -10.54935 -10.43551 -10.17359 -9.83694 -9.36161 -8.64105 -7.86249 -5.31129 -0.83725 -0.36540 0.84125 1.39864 1.39970 1.45697 1.50086 2.08682 2.28715 2.50216 3.06115 3.25452 3.27978 3.52702 3.59583 3.69940 3.71918 3.81594 3.94158 3.98445 4.02703 4.09187 4.28014 4.38419 4.46618 4.47968 4.49267 4.69229 4.74724 4.82908 4.85854 4.92008 4.95996 5.00096 5.02550 5.15456 5.16872 5.22782 5.25083 5.26710 5.35778 5.46877 5.50955 5.58335 5.63069 5.70358 5.73548 5.76288 6.41398 6.55220 6.85039 7.18670 7.23656 7.97030 8.35148 9.18606 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.002710 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.433743 B =10329.198462 C =11580.709340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.956 3.044 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.163 3.837 14 H 0.051 0.949 15 N -0.702 5.702 16 C 0.547 3.453 17 O -0.582 6.582 18 C -0.143 4.143 19 C -0.069 4.069 20 C -0.098 4.098 21 C 0.124 3.876 22 N -0.504 5.504 23 C 0.140 3.860 24 C -0.170 4.170 25 C -0.059 4.059 26 C -0.130 4.130 27 C -0.037 4.037 28 C -0.131 4.131 29 C 0.195 3.805 30 H 0.246 0.754 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.196 0.804 41 H 0.176 0.824 42 H 0.158 0.842 43 H 0.132 0.868 44 H 0.047 0.953 45 H 0.077 0.923 46 H -0.002 1.002 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -14.811 -22.524 27.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.784 3.216 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.173 4.173 12 C -0.141 4.141 13 C 0.058 3.942 14 H 0.069 0.931 15 N -0.354 5.354 16 C 0.336 3.664 17 O -0.463 6.463 18 C -0.146 4.146 19 C -0.089 4.089 20 C -0.117 4.117 21 C 0.003 3.997 22 N -0.212 5.212 23 C -0.032 4.032 24 C -0.189 4.189 25 C -0.084 4.084 26 C -0.132 4.132 27 C -0.057 4.057 28 C -0.171 4.171 29 C 0.069 3.931 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.253 0.747 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.213 0.787 41 H 0.194 0.806 42 H 0.175 0.825 43 H 0.150 0.850 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.016 0.984 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.229 -14.840 -22.337 27.011 hybrid contribution 0.038 2.235 0.452 2.281 sum 3.267 -12.605 -21.885 25.466 Atomic orbital electron populations 1.70203 1.06528 1.25519 1.55796 1.25718 0.95967 1.01345 1.01505 0.85512 0.77817 0.80109 0.78122 1.21519 1.22021 1.19388 1.19422 0.92832 0.86596 1.40298 0.91810 1.43839 1.34179 1.02728 1.51847 1.20966 0.95307 0.86860 0.94788 1.21288 0.98810 1.00275 0.96883 1.20532 1.00705 0.96651 0.96262 1.20218 0.96080 0.98725 0.79162 0.93106 1.45952 1.73731 1.10101 1.05659 1.18701 0.75912 0.85494 0.86323 1.90841 1.51510 1.19259 1.84681 1.19920 1.07433 0.95480 0.91740 1.21134 0.96369 0.93515 0.97854 1.20930 0.99927 1.00534 0.90292 1.19314 0.96992 0.91109 0.92326 1.68139 1.14297 1.39455 0.99325 1.23755 0.89917 0.89920 0.99585 1.22321 1.00775 0.97696 0.98120 1.21926 0.93527 1.00629 0.92366 1.18969 1.04735 0.95174 0.94282 1.21518 0.93083 1.00102 0.91004 1.22289 0.96715 0.99945 0.98182 1.20650 0.87954 0.95350 0.89119 0.94448 0.94364 0.93256 0.94503 0.89057 0.90074 0.89890 0.74700 0.81870 0.82025 0.78734 0.80623 0.82479 0.84985 0.93459 0.90436 0.98392 0.95610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.60 11.12 21.65 0.24 -58.36 16 2 C -0.05 -2.98 4.83 84.86 0.41 -2.57 16 3 Si 0.96 48.28 29.59 68.60 2.03 50.31 16 4 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 5 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.26 -14.95 9.43 84.03 0.79 -14.16 16 8 H 0.06 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.60 -30.79 2.26 -697.67 -1.58 -32.36 16 10 C 0.15 5.86 5.65 87.37 0.49 6.36 16 11 C -0.13 -4.16 5.74 29.39 0.17 -3.99 16 12 C -0.10 -2.79 4.69 28.61 0.13 -2.66 16 13 C 0.16 5.69 2.06 44.16 0.09 5.78 16 14 H 0.05 2.38 6.92 -2.39 -0.02 2.37 16 15 N -0.70 -19.60 4.88 -449.46 -2.19 -21.79 16 16 C 0.55 18.33 7.59 86.77 0.66 18.99 16 17 O -0.58 -26.37 15.97 -3.91 -0.06 -26.43 16 18 C -0.14 -3.71 5.87 -20.10 -0.12 -3.83 16 19 C -0.07 -1.26 9.44 22.27 0.21 -1.05 16 20 C -0.10 -1.79 9.95 22.30 0.22 -1.57 16 21 C 0.12 2.66 6.61 40.35 0.27 2.92 16 22 N -0.50 -9.78 10.33 -188.46 -1.95 -11.73 16 23 C 0.14 1.79 11.15 85.06 0.95 2.74 16 24 C -0.17 -1.88 10.03 22.14 0.22 -1.66 16 25 C -0.06 -0.95 9.89 22.53 0.22 -0.72 16 26 C -0.13 -2.85 5.74 -21.28 -0.12 -2.98 16 27 C -0.04 -0.96 9.35 22.82 0.21 -0.75 16 28 C -0.13 -5.12 5.39 30.35 0.16 -4.96 16 29 C 0.20 10.05 4.71 86.61 0.41 10.46 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 32 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 1.73 8.04 -2.38 -0.02 1.71 16 36 H 0.08 1.85 7.36 -2.39 -0.02 1.84 16 37 H 0.41 7.56 6.59 -92.71 -0.61 6.95 16 38 H 0.16 1.82 6.35 -2.91 -0.02 1.80 16 39 H 0.16 2.15 8.06 -2.92 -0.02 2.13 16 40 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 42 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.13 3.68 7.62 -2.92 -0.02 3.65 16 44 H 0.05 1.90 7.85 -2.39 -0.02 1.88 16 45 H 0.08 2.55 7.32 -2.38 -0.02 2.53 16 46 H 0.00 -0.11 8.03 -2.39 -0.02 -0.13 16 47 H 0.03 1.56 6.39 -2.39 -0.02 1.54 16 Total: -1.00 -81.98 376.79 2.26 -79.72 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.38 Total: 14.28 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.38 Total: 6.37 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -5.48 Total: -124.24 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.06 Total: -26.43 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -81.98 2.26 -79.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052677440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.409 kcal (2) G-P(sol) polarization free energy of solvation -81.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds