Wall clock time and date at job start Tue Mar 31 2020 23:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47001 * 240.00260 * 3 2 1 5 5 H 1.48494 * 109.46853 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46798 * 120.00064 * 3 2 1 7 7 C 1.38817 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99967 * 160.13649 * 7 2 1 9 9 N 1.36928 * 119.99710 * 340.41623 * 7 2 1 10 10 C 1.50169 * 120.53947 * 336.75755 * 9 7 2 11 11 C 1.46241 * 107.53137 * 109.56927 * 10 9 7 12 12 C 1.52530 * 114.27810 * 58.41353 * 11 10 9 13 13 C 1.50131 * 105.40998 * 270.59721 * 12 11 10 14 14 H 1.08996 * 109.20871 * 337.37319 * 13 12 11 15 15 N 1.46504 * 109.20206 * 218.02696 * 13 12 11 16 16 C 1.34777 * 119.99925 * 155.00282 * 15 13 12 17 17 O 1.21564 * 119.99947 * 359.97438 * 16 15 13 18 18 C 1.47762 * 119.99964 * 179.97438 * 16 15 13 19 19 C 1.40599 * 120.26878 * 359.72121 * 18 16 15 20 20 N 1.30791 * 121.53836 * 179.71097 * 19 18 16 21 21 C 1.33822 * 121.71743 * 0.55310 * 20 19 18 22 22 C 1.40519 * 120.81409 * 179.70159 * 21 20 19 23 23 C 1.36137 * 119.82015 * 180.02562 * 22 21 20 24 24 C 1.39341 * 121.08215 * 0.02562 * 23 22 21 25 25 C 1.36144 * 120.83371 * 359.97438 * 24 23 22 26 26 C 1.40538 * 119.62597 * 359.97438 * 25 24 23 27 27 C 1.39006 * 120.26749 * 179.97438 * 18 16 15 28 28 C 1.54833 * 110.81928 * 97.68206 * 13 12 11 29 29 C 1.43435 * 120.53944 * 156.48649 * 9 7 2 30 30 H 0.96994 * 120.00067 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.85230 * 229.08146 * 10 9 7 32 32 H 1.09003 * 109.84695 * 350.06888 * 10 9 7 33 33 H 1.09004 * 108.52521 * 179.65475 * 11 10 9 34 34 H 1.09003 * 108.52376 * 297.32536 * 11 10 9 35 35 H 1.09004 * 110.24461 * 29.56015 * 12 11 10 36 36 H 1.08997 * 110.25087 * 151.61819 * 12 11 10 37 37 H 0.97002 * 120.00227 * 334.99668 * 15 13 12 38 38 H 1.08004 * 119.22736 * 359.97438 * 19 18 16 39 39 H 1.08004 * 120.09354 * 0.06944 * 22 21 20 40 40 H 1.08000 * 119.45672 * 179.97438 * 23 22 21 41 41 H 1.07994 * 119.57975 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.18835 * 180.02562 * 25 24 23 43 43 H 1.08002 * 121.01642 * 0.02562 * 27 18 16 44 44 H 1.08999 * 109.36076 * 81.33270 * 28 13 12 45 45 H 1.09000 * 109.35841 * 200.91865 * 28 13 12 46 46 H 1.08999 * 108.15570 * 33.29983 * 29 9 7 47 47 H 1.08998 * 108.16167 * 149.86514 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0421 -1.2298 -0.3184 9 7 1.3850 -2.3539 0.3964 10 6 0.1853 -2.2990 1.2980 11 6 -0.9806 -2.6842 0.5037 12 6 -0.8820 -4.0714 -0.1228 13 6 -0.2302 -3.8604 -1.4587 14 1 -0.3805 -2.8273 -1.7719 15 7 -0.8448 -4.7562 -2.4416 16 6 -0.8200 -4.4383 -3.7512 17 8 -0.2880 -3.4082 -4.1166 18 6 -1.4394 -5.3421 -4.7426 19 6 -2.0511 -6.5378 -4.3268 20 7 -2.6116 -7.3530 -5.1823 21 6 -2.6220 -7.0964 -6.4956 22 6 -3.2243 -7.9887 -7.3987 23 6 -3.2227 -7.7078 -8.7308 24 6 -2.6309 -6.5450 -9.2200 25 6 -2.0374 -5.6561 -8.3768 26 6 -2.0213 -5.9133 -6.9953 27 6 -1.4175 -5.0195 -6.0946 28 6 1.2884 -4.1529 -1.3824 29 6 1.8618 -3.6320 -0.0468 30 1 -0.4850 0.8400 0.0004 31 1 0.3138 -2.9940 2.1278 32 1 0.0550 -1.2862 1.6793 33 1 -1.8614 -2.6558 1.1452 34 1 -1.1118 -1.9544 -0.2952 35 1 -0.2672 -4.7230 0.4982 36 1 -1.8764 -4.4988 -0.2515 37 1 -1.2696 -5.5780 -2.1500 38 1 -2.0620 -6.7868 -3.2759 39 1 -3.6880 -8.8946 -7.0369 40 1 -3.6870 -8.3979 -9.4196 41 1 -2.6433 -6.3465 -10.2815 42 1 -1.5821 -4.7579 -8.7673 43 1 -0.9505 -4.1097 -6.4421 44 1 1.4533 -5.2280 -1.4533 45 1 1.7940 -3.6565 -2.2106 46 1 2.9456 -3.5739 -0.1477 47 1 1.6371 -4.3656 0.7275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052749397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:43 Heat of formation + Delta-G solvation = 30.856665 kcal Electronic energy + Delta-G solvation = -28954.850900 eV Core-core repulsion = 25102.421174 eV Total energy + Delta-G solvation = -3852.429726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06138 -40.86501 -39.32299 -37.92320 -36.33076 -34.53506 -34.10141 -33.32135 -32.30226 -31.15864 -30.95565 -28.01153 -26.14156 -25.60276 -25.12997 -24.34881 -23.13204 -22.23843 -21.59012 -20.78895 -19.30349 -18.88021 -18.63998 -18.11052 -16.96933 -16.95529 -16.74539 -16.28834 -15.81343 -15.65673 -15.58813 -15.35351 -15.19261 -14.97657 -14.93593 -14.46430 -14.23313 -14.00305 -13.90613 -13.48771 -13.21717 -13.13786 -12.80172 -12.75888 -12.65921 -12.45424 -12.38052 -12.15580 -11.96006 -11.75639 -11.63540 -11.59006 -11.21180 -11.18174 -11.10895 -10.56491 -10.43137 -10.08183 -9.82366 -9.32624 -8.63010 -7.81746 -5.21473 -0.85829 -0.45141 0.80834 1.46751 1.47117 1.50100 1.53935 2.09572 2.21653 2.54841 3.03381 3.12386 3.30977 3.51021 3.55642 3.63894 3.68424 3.76312 3.93597 4.04108 4.12621 4.19806 4.31299 4.34832 4.40117 4.50646 4.65592 4.67205 4.75638 4.79847 4.89299 4.91377 4.92867 5.03093 5.08036 5.19950 5.30219 5.30748 5.32562 5.38884 5.41934 5.43949 5.52832 5.66269 5.68317 5.80088 5.82268 6.22100 6.44026 6.53100 6.70764 7.20801 7.21125 7.94664 8.42224 9.22048 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.002497 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.238143 B =11212.621894 C =12027.697595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.045 4.045 3 Si 0.955 3.045 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.057 0.943 9 N -0.602 5.602 10 C 0.167 3.833 11 C -0.124 4.124 12 C -0.107 4.107 13 C 0.168 3.832 14 H 0.043 0.957 15 N -0.704 5.704 16 C 0.555 3.445 17 O -0.582 6.582 18 C -0.202 4.202 19 C 0.164 3.836 20 N -0.488 5.488 21 C 0.119 3.881 22 C -0.115 4.115 23 C -0.078 4.078 24 C -0.113 4.113 25 C -0.098 4.098 26 C -0.127 4.127 27 C 0.003 3.997 28 C -0.141 4.141 29 C 0.156 3.844 30 H 0.246 0.754 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.413 0.587 38 H 0.189 0.811 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.082 0.918 45 H 0.017 0.983 46 H 0.026 0.974 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -19.702 -13.790 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.241 4.241 3 Si 0.785 3.215 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.075 0.925 9 N -0.324 5.324 10 C 0.043 3.957 11 C -0.163 4.163 12 C -0.145 4.145 13 C 0.064 3.936 14 H 0.061 0.939 15 N -0.356 5.356 16 C 0.342 3.658 17 O -0.463 6.463 18 C -0.207 4.207 19 C -0.010 4.010 20 N -0.195 5.195 21 C -0.002 4.002 22 C -0.134 4.134 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.023 4.023 28 C -0.183 4.183 29 C 0.027 3.973 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.251 0.749 38 H 0.206 0.794 39 H 0.167 0.833 40 H 0.185 0.815 41 H 0.181 0.819 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.100 0.900 45 H 0.036 0.964 46 H 0.044 0.956 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.075 -19.639 -13.792 25.656 hybrid contribution 0.871 2.115 -0.207 2.297 sum -8.204 -17.523 -13.999 23.882 Atomic orbital electron populations 1.70126 1.05819 1.25104 1.55014 1.25521 0.96046 1.00696 1.01791 0.85530 0.77761 0.80403 0.77834 1.21374 1.22062 1.20440 1.19332 0.93575 0.86855 1.39361 0.92514 1.44452 1.34134 1.01279 1.52547 1.20132 0.85501 0.99371 0.90653 1.20751 0.98297 0.96153 1.01102 1.21296 1.00911 0.98006 0.94308 1.20886 0.92378 0.92435 0.87896 0.93873 1.46173 1.58003 1.25839 1.05545 1.18440 0.78968 0.85009 0.83361 1.90817 1.47099 1.27809 1.80572 1.20893 1.06454 0.98773 0.94618 1.23341 0.89430 0.87478 1.00787 1.68002 1.17647 1.31384 1.02503 1.19459 0.96392 0.93398 0.90909 1.21091 0.99878 0.99513 0.92869 1.21462 0.96120 0.97095 0.95055 1.21405 0.96325 0.93549 1.01744 1.21381 0.98848 1.00940 0.90537 1.19021 1.01779 0.96038 0.96058 1.22115 0.90929 0.97592 0.91705 1.23102 0.95100 1.00178 0.99907 1.20394 0.96033 0.87558 0.93304 0.94518 0.94782 0.92619 0.93480 0.92365 0.89508 0.89417 0.74851 0.79411 0.83266 0.81493 0.81935 0.83458 0.83619 0.89972 0.96387 0.95596 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.25 9.42 21.65 0.20 -53.05 16 2 C -0.04 -2.53 4.91 84.86 0.42 -2.11 16 3 Si 0.96 46.56 29.60 68.60 2.03 48.59 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.26 -14.66 9.62 84.04 0.81 -13.85 16 8 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 9 N -0.60 -29.65 2.61 -708.85 -1.85 -31.50 16 10 C 0.17 7.58 5.25 83.58 0.44 8.02 16 11 C -0.12 -5.12 5.02 28.36 0.14 -4.98 16 12 C -0.11 -3.44 5.34 29.51 0.16 -3.28 16 13 C 0.17 6.31 2.22 44.69 0.10 6.41 16 14 H 0.04 2.21 6.26 -2.39 -0.01 2.20 16 15 N -0.70 -20.96 4.93 -446.91 -2.20 -23.16 16 16 C 0.55 19.19 7.72 86.76 0.67 19.86 16 17 O -0.58 -26.62 16.05 -3.92 -0.06 -26.68 16 18 C -0.20 -5.56 5.89 -20.00 -0.12 -5.67 16 19 C 0.16 3.65 10.68 85.42 0.91 4.57 16 20 N -0.49 -11.49 10.30 -187.68 -1.93 -13.43 16 21 C 0.12 2.66 6.61 40.27 0.27 2.92 16 22 C -0.12 -1.83 9.97 22.34 0.22 -1.60 16 23 C -0.08 -0.82 9.94 22.05 0.22 -0.60 16 24 C -0.11 -1.23 9.96 22.05 0.22 -1.01 16 25 C -0.10 -1.59 9.77 22.34 0.22 -1.37 16 26 C -0.13 -2.85 5.74 -21.29 -0.12 -2.97 16 27 C 0.00 0.08 9.46 23.01 0.22 0.30 16 28 C -0.14 -5.41 5.97 31.70 0.19 -5.22 16 29 C 0.16 6.36 5.13 87.42 0.45 6.81 16 30 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.06 2.92 6.05 -2.39 -0.01 2.91 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.06 2.99 5.29 -2.39 -0.01 2.98 16 35 H 0.09 2.45 6.28 -2.39 -0.01 2.44 16 36 H 0.09 2.25 7.85 -2.39 -0.02 2.23 16 37 H 0.41 8.40 6.50 -92.71 -0.60 7.79 16 38 H 0.19 2.85 6.37 -2.91 -0.02 2.83 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 41 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.15 3.92 7.70 -2.91 -0.02 3.90 16 44 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.03 1.08 7.99 -2.39 -0.02 1.06 16 47 H 0.06 2.11 6.89 -2.39 -0.02 2.09 16 Total: -1.00 -76.03 371.59 1.99 -74.04 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.40 Total: 18.95 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.41 Total: 6.24 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -5.78 Total: -121.14 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.68 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -76.03 1.99 -74.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052749397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.896 kcal (2) G-P(sol) polarization free energy of solvation -76.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds