Wall clock time and date at job start Tue Mar 31 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46998 * 239.99995 * 3 2 1 5 5 H 1.48502 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46893 * 120.00028 * 3 2 1 7 7 C 1.38810 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 160.40532 * 7 2 1 9 9 N 1.36937 * 119.99885 * 340.41216 * 7 2 1 10 10 C 1.43438 * 120.53276 * 156.68295 * 9 7 2 11 11 C 1.54899 * 116.07871 * 271.58389 * 10 9 7 12 12 C 1.54846 * 110.14434 * 318.64354 * 11 10 9 13 13 C 1.50127 * 110.81146 * 321.13484 * 12 11 10 14 14 H 1.08997 * 110.37281 * 338.64097 * 13 12 11 15 15 N 1.46500 * 110.24724 * 216.65129 * 13 12 11 16 16 C 1.34779 * 120.00248 * 159.02140 * 15 13 12 17 17 O 1.21552 * 119.99631 * 359.97438 * 16 15 13 18 18 C 1.47879 * 120.00469 * 180.02562 * 16 15 13 19 19 C 1.40577 * 119.70506 * 0.02562 * 18 16 15 20 20 C 1.35810 * 120.73597 * 179.97438 * 19 18 16 21 21 C 1.40556 * 119.98529 * 359.72508 * 20 19 18 22 22 C 1.40823 * 121.13694 * 179.70696 * 21 20 19 23 23 C 1.36552 * 118.19563 * 180.31721 * 22 21 20 24 24 C 1.39413 * 119.94351 * 0.27216 * 23 22 21 25 25 N 1.31025 * 121.71011 * 359.97438 * 24 23 22 26 26 C 1.33743 * 121.35195 * 0.02562 * 25 24 23 27 27 C 1.38405 * 119.70884 * 179.97438 * 18 16 15 28 28 C 1.52528 * 105.41557 * 97.68134 * 13 12 11 29 29 C 1.46236 * 114.27785 * 270.59087 * 28 13 12 30 30 H 0.97001 * 119.99741 * 359.97438 * 1 2 3 31 31 H 1.08995 * 108.16050 * 33.30278 * 10 9 7 32 32 H 1.08999 * 108.15730 * 150.07893 * 10 9 7 33 33 H 1.08995 * 109.36043 * 78.84967 * 11 10 9 34 34 H 1.09005 * 109.35950 * 198.57603 * 11 10 9 35 35 H 1.09001 * 109.21265 * 200.79041 * 12 11 10 36 36 H 1.09000 * 109.20615 * 81.47326 * 12 11 10 37 37 H 0.96997 * 120.00424 * 339.02428 * 15 13 12 38 38 H 1.07996 * 119.63148 * 359.96660 * 19 18 16 39 39 H 1.08002 * 120.00869 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.90040 * 0.57948 * 22 21 20 41 41 H 1.08001 * 120.02989 * 180.29302 * 23 22 21 42 42 H 1.07994 * 119.14755 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.23187 * 359.97438 * 27 18 16 44 44 H 1.09005 * 108.52299 * 31.83455 * 28 13 12 45 45 H 1.08997 * 108.52242 * 149.50108 * 28 13 12 46 46 H 1.09001 * 109.84651 * 177.91647 * 29 28 13 47 47 H 1.09005 * 109.84612 * 298.83223 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0434 -1.2294 -0.3131 9 7 1.3850 -2.3535 0.3986 10 6 1.8644 -3.6322 -0.0401 11 6 1.2862 -4.1533 -1.3794 12 6 -0.2324 -3.8605 -1.4544 13 6 -0.8829 -4.0706 -0.1178 14 1 -0.2699 -4.7229 0.5041 15 7 -2.2198 -4.6447 -0.2892 16 6 -2.8086 -5.2983 0.7319 17 8 -2.2301 -5.4119 1.7949 18 6 -4.1578 -5.8783 0.5587 19 6 -4.8206 -5.7448 -0.6738 20 6 -6.0598 -6.2697 -0.8560 21 6 -6.6912 -6.9605 0.1927 22 6 -7.9782 -7.5091 0.0324 23 6 -8.5377 -8.1626 1.0928 24 6 -7.8378 -8.2666 2.2941 25 7 -6.6425 -7.7507 2.4415 26 6 -6.0380 -7.0983 1.4427 27 6 -4.7565 -6.5488 1.6112 28 6 -0.9805 -2.6832 0.5082 29 6 0.1862 -2.2979 1.3012 30 1 -0.4850 0.8401 0.0004 31 1 2.9483 -3.5733 -0.1381 32 1 1.6348 -4.3648 0.7336 33 1 1.7912 -3.6574 -2.2083 34 1 1.4486 -5.2290 -1.4489 35 1 -0.6906 -4.5272 -2.1850 36 1 -0.3834 -2.8276 -1.7683 37 1 -2.6813 -4.5545 -1.1376 38 1 -4.3389 -5.2188 -1.4848 39 1 -6.5580 -6.1605 -1.8079 40 1 -8.5066 -7.4192 -0.9052 41 1 -9.5215 -8.5988 1.0010 42 1 -8.2923 -8.7866 3.1243 43 1 -4.2416 -6.6491 2.5553 44 1 -1.1140 -1.9521 -0.2892 45 1 -1.8591 -2.6551 1.1527 46 1 0.0566 -1.2849 1.6822 47 1 0.3146 -2.9919 2.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052801869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:32 Heat of formation + Delta-G solvation = 51.332744 kcal Electronic energy + Delta-G solvation = -28908.331806 eV Core-core repulsion = 25056.789990 eV Total energy + Delta-G solvation = -3851.541817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.15426 -39.74735 -37.83980 -36.77256 -34.63768 -33.77029 -32.58039 -31.42066 -30.67182 -30.28100 -30.13597 -26.27995 -25.16569 -24.16583 -23.61191 -23.08239 -22.34969 -20.94227 -19.99828 -19.30039 -18.35998 -17.68010 -17.13951 -16.62316 -16.18078 -15.70412 -14.95002 -14.84813 -14.76847 -14.34843 -14.28225 -14.17274 -13.86073 -13.77191 -13.72911 -13.38120 -13.23563 -12.79881 -12.11836 -12.08952 -11.92317 -11.85040 -11.73107 -11.39055 -11.20189 -10.86518 -10.78437 -10.72453 -10.35842 -10.18612 -9.99221 -9.83317 -9.78730 -9.62707 -9.50473 -9.23830 -9.11298 -8.67057 -8.56059 -8.30020 -6.68919 -5.76476 -3.15334 -0.00573 0.35700 1.61702 2.30014 3.28586 3.33978 3.40323 3.46415 3.48807 3.89085 4.00185 4.23580 4.38082 4.51968 4.53360 4.61547 4.69713 4.86219 4.90931 5.16135 5.35497 5.42348 5.45974 5.55437 5.59461 5.62360 5.68681 5.75412 5.77688 5.98120 6.04084 6.13859 6.19005 6.27960 6.32500 6.44620 6.49634 6.53582 6.68419 6.87204 6.90838 6.95051 7.08894 7.14637 7.29062 7.58396 7.62001 7.76258 7.79881 7.98357 8.44491 8.46107 9.21808 9.89851 10.43551 11.30654 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.002309 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.558756 B =12123.817039 C =12310.829957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.146 3.854 14 H 0.085 0.915 15 N -0.712 5.712 16 C 0.551 3.449 17 O -0.531 6.531 18 C -0.110 4.110 19 C -0.088 4.088 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.061 4.061 23 C -0.171 4.171 24 C 0.127 3.873 25 N -0.465 5.465 26 C 0.117 3.883 27 C -0.026 4.026 28 C -0.132 4.132 29 C 0.168 3.832 30 H 0.252 0.748 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.393 0.607 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.151 0.849 44 H 0.102 0.898 45 H 0.030 0.970 46 H 0.091 0.909 47 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 -15.777 -3.580 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.043 3.957 14 H 0.103 0.897 15 N -0.362 5.362 16 C 0.337 3.663 17 O -0.408 6.408 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.092 4.092 22 C -0.087 4.087 23 C -0.191 4.191 24 C -0.046 4.046 25 N -0.173 5.173 26 C -0.003 4.003 27 C -0.046 4.046 28 C -0.172 4.172 29 C 0.044 3.956 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.228 0.772 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.120 0.880 45 H 0.048 0.952 46 H 0.109 0.891 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -16.490 -15.684 -2.034 22.848 hybrid contribution -0.504 1.028 -1.479 1.870 sum -16.994 -14.657 -3.514 22.715 Atomic orbital electron populations 1.69955 1.05059 1.25242 1.54371 1.24885 0.95237 0.98148 1.01408 0.86404 0.78945 0.83615 0.77999 1.21147 1.21816 1.21225 1.19172 0.93579 0.85415 1.39427 0.91576 1.44258 1.33762 1.00878 1.52049 1.20438 0.96462 0.88242 0.92405 1.22835 0.94860 0.98445 1.01993 1.21699 0.96122 1.02455 0.94771 1.20552 0.80625 0.96273 0.98228 0.89696 1.46220 1.19641 1.55658 1.14671 1.18116 0.85030 0.78698 0.84424 1.90795 1.64664 1.59151 1.26188 1.20090 0.95680 1.01035 0.94662 1.21026 0.94931 0.98325 0.96400 1.20862 0.95215 0.97750 0.98288 1.18960 0.95532 0.99594 0.95082 1.21513 0.93323 0.94451 0.99401 1.21956 1.01816 1.00882 0.94440 1.23017 0.90032 0.94786 0.96769 1.68042 1.10258 1.08090 1.30895 1.18781 0.94827 0.97363 0.89363 1.21269 0.91705 0.92277 0.99328 1.21335 0.98939 0.94504 1.02381 1.20099 0.84918 1.00591 0.89947 0.93779 0.94830 0.95242 0.92610 0.93681 0.94125 0.90006 0.77225 0.84927 0.84649 0.84199 0.84379 0.82210 0.83089 0.87956 0.95158 0.89093 0.97183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 9.43 55.49 0.52 -24.07 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 21.42 29.60 -169.99 -5.03 16.39 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.57 9.63 -15.06 -0.14 -6.72 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.42 2.60 -175.09 -0.46 -14.88 16 10 C 0.15 3.24 5.18 -4.66 -0.02 3.21 16 11 C -0.14 -2.56 6.41 -24.76 -0.16 -2.71 16 12 C -0.11 -2.01 5.30 -27.19 -0.14 -2.15 16 13 C 0.15 2.72 2.17 -69.60 -0.15 2.57 16 14 H 0.09 1.74 5.83 -51.93 -0.30 1.44 16 15 N -0.71 -11.02 4.96 -56.38 -0.28 -11.30 16 16 C 0.55 9.13 7.62 -12.31 -0.09 9.04 16 17 O -0.53 -10.84 16.01 5.32 0.09 -10.76 16 18 C -0.11 -1.47 5.87 -105.01 -0.62 -2.09 16 19 C -0.09 -0.90 9.44 -39.57 -0.37 -1.28 16 20 C -0.10 -0.90 9.74 -39.58 -0.39 -1.29 16 21 C -0.09 -0.91 5.75 -106.72 -0.61 -1.52 16 22 C -0.06 -0.44 9.89 -39.21 -0.39 -0.83 16 23 C -0.17 -1.12 10.03 -39.75 -0.40 -1.52 16 24 C 0.13 1.07 11.15 -17.46 -0.19 0.87 16 25 N -0.47 -5.62 10.34 -10.98 -0.11 -5.74 16 26 C 0.12 1.47 6.60 -84.87 -0.56 0.91 16 27 C -0.03 -0.36 9.56 -38.68 -0.37 -0.73 16 28 C -0.13 -2.89 4.73 -30.19 -0.14 -3.04 16 29 C 0.17 4.07 5.24 -5.21 -0.03 4.05 16 30 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 32 H 0.03 0.60 6.88 -51.93 -0.36 0.24 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 36 H 0.08 1.70 6.83 -51.93 -0.35 1.35 16 37 H 0.39 4.83 6.43 -40.82 -0.26 4.56 16 38 H 0.13 1.05 6.34 -52.49 -0.33 0.72 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.15 2.22 7.60 -52.49 -0.40 1.82 16 44 H 0.10 2.48 5.29 -51.93 -0.27 2.21 16 45 H 0.03 0.67 7.90 -51.93 -0.41 0.26 16 46 H 0.09 2.44 6.05 -51.93 -0.31 2.13 16 47 H 0.01 0.24 8.13 -51.93 -0.42 -0.18 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -31.85 371.24 -10.88 -42.73 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.34 Total: 5.30 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -4.87 Total: -3.28 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.33 Total: -55.98 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.85 -10.88 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052801869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.063 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds