Wall clock time and date at job start Tue Mar 31 2020 22:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46998 * 239.99995 * 3 2 1 5 5 H 1.48502 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46893 * 120.00028 * 3 2 1 7 7 C 1.38810 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 160.40532 * 7 2 1 9 9 N 1.36937 * 119.99885 * 340.41216 * 7 2 1 10 10 C 1.43438 * 120.53276 * 156.68295 * 9 7 2 11 11 C 1.54899 * 116.07871 * 271.58389 * 10 9 7 12 12 C 1.54846 * 110.14434 * 318.64354 * 11 10 9 13 13 C 1.50127 * 110.81146 * 321.13484 * 12 11 10 14 14 H 1.08997 * 110.37281 * 338.64097 * 13 12 11 15 15 N 1.46500 * 110.24724 * 216.65129 * 13 12 11 16 16 C 1.34779 * 120.00248 * 159.02140 * 15 13 12 17 17 O 1.21552 * 119.99631 * 359.97438 * 16 15 13 18 18 C 1.47879 * 120.00469 * 180.02562 * 16 15 13 19 19 C 1.40577 * 119.70506 * 0.02562 * 18 16 15 20 20 C 1.35810 * 120.73597 * 179.97438 * 19 18 16 21 21 C 1.40556 * 119.98529 * 359.72508 * 20 19 18 22 22 C 1.40823 * 121.13694 * 179.70696 * 21 20 19 23 23 C 1.36552 * 118.19563 * 180.31721 * 22 21 20 24 24 C 1.39413 * 119.94351 * 0.27216 * 23 22 21 25 25 N 1.31025 * 121.71011 * 359.97438 * 24 23 22 26 26 C 1.33743 * 121.35195 * 0.02562 * 25 24 23 27 27 C 1.38405 * 119.70884 * 179.97438 * 18 16 15 28 28 C 1.52528 * 105.41557 * 97.68134 * 13 12 11 29 29 C 1.46236 * 114.27785 * 270.59087 * 28 13 12 30 30 H 0.97001 * 119.99741 * 359.97438 * 1 2 3 31 31 H 1.08995 * 108.16050 * 33.30278 * 10 9 7 32 32 H 1.08999 * 108.15730 * 150.07893 * 10 9 7 33 33 H 1.08995 * 109.36043 * 78.84967 * 11 10 9 34 34 H 1.09005 * 109.35950 * 198.57603 * 11 10 9 35 35 H 1.09001 * 109.21265 * 200.79041 * 12 11 10 36 36 H 1.09000 * 109.20615 * 81.47326 * 12 11 10 37 37 H 0.96997 * 120.00424 * 339.02428 * 15 13 12 38 38 H 1.07996 * 119.63148 * 359.96660 * 19 18 16 39 39 H 1.08002 * 120.00869 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.90040 * 0.57948 * 22 21 20 41 41 H 1.08001 * 120.02989 * 180.29302 * 23 22 21 42 42 H 1.07994 * 119.14755 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.23187 * 359.97438 * 27 18 16 44 44 H 1.09005 * 108.52299 * 31.83455 * 28 13 12 45 45 H 1.08997 * 108.52242 * 149.50108 * 28 13 12 46 46 H 1.09001 * 109.84651 * 177.91647 * 29 28 13 47 47 H 1.09005 * 109.84612 * 298.83223 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0434 -1.2294 -0.3131 9 7 1.3850 -2.3535 0.3986 10 6 1.8644 -3.6322 -0.0401 11 6 1.2862 -4.1533 -1.3794 12 6 -0.2324 -3.8605 -1.4544 13 6 -0.8829 -4.0706 -0.1178 14 1 -0.2699 -4.7229 0.5041 15 7 -2.2198 -4.6447 -0.2892 16 6 -2.8086 -5.2983 0.7319 17 8 -2.2301 -5.4119 1.7949 18 6 -4.1578 -5.8783 0.5587 19 6 -4.8206 -5.7448 -0.6738 20 6 -6.0598 -6.2697 -0.8560 21 6 -6.6912 -6.9605 0.1927 22 6 -7.9782 -7.5091 0.0324 23 6 -8.5377 -8.1626 1.0928 24 6 -7.8378 -8.2666 2.2941 25 7 -6.6425 -7.7507 2.4415 26 6 -6.0380 -7.0983 1.4427 27 6 -4.7565 -6.5488 1.6112 28 6 -0.9805 -2.6832 0.5082 29 6 0.1862 -2.2979 1.3012 30 1 -0.4850 0.8401 0.0004 31 1 2.9483 -3.5733 -0.1381 32 1 1.6348 -4.3648 0.7336 33 1 1.7912 -3.6574 -2.2083 34 1 1.4486 -5.2290 -1.4489 35 1 -0.6906 -4.5272 -2.1850 36 1 -0.3834 -2.8276 -1.7683 37 1 -2.6813 -4.5545 -1.1376 38 1 -4.3389 -5.2188 -1.4848 39 1 -6.5580 -6.1605 -1.8079 40 1 -8.5066 -7.4192 -0.9052 41 1 -9.5215 -8.5988 1.0010 42 1 -8.2923 -8.7866 3.1243 43 1 -4.2416 -6.6491 2.5553 44 1 -1.1140 -1.9521 -0.2892 45 1 -1.8591 -2.6551 1.1527 46 1 0.0566 -1.2849 1.6822 47 1 0.3146 -2.9919 2.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052801869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:31 Heat of formation + Delta-G solvation = 32.012836 kcal Electronic energy + Delta-G solvation = -28909.169580 eV Core-core repulsion = 25056.789990 eV Total energy + Delta-G solvation = -3852.379591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96685 -41.03449 -39.37095 -37.71820 -36.28476 -34.47624 -34.26347 -32.85991 -32.43203 -31.33404 -31.04652 -28.01076 -26.37817 -25.02518 -24.93018 -24.84984 -23.15265 -22.14580 -21.71302 -20.87831 -19.40154 -18.61768 -18.46884 -17.90928 -17.16142 -17.04709 -16.79124 -16.11151 -15.72472 -15.56310 -15.49406 -15.40644 -15.30835 -15.02220 -14.90739 -14.57671 -14.42390 -13.91512 -13.71574 -13.52831 -13.24746 -13.06428 -12.95009 -12.73829 -12.61810 -12.59242 -12.50930 -12.09414 -11.88766 -11.73016 -11.67498 -11.56113 -11.22288 -11.04805 -11.02700 -10.51625 -10.48844 -10.06032 -9.79830 -9.33976 -8.67007 -7.81080 -5.22160 -0.78191 -0.36756 0.86518 1.45686 1.48645 1.52306 1.57490 2.05943 2.27455 2.55452 3.08558 3.27422 3.32164 3.52455 3.57102 3.64636 3.83094 3.93955 4.01278 4.04343 4.06994 4.09963 4.26395 4.30730 4.52793 4.57752 4.61354 4.67434 4.72942 4.84854 4.86720 4.92629 4.94856 5.03362 5.08824 5.16706 5.20000 5.22501 5.30835 5.31594 5.38008 5.50417 5.53318 5.62819 5.67443 5.69909 5.77964 6.05352 6.42608 6.53035 6.91325 7.16489 7.18560 7.90311 8.43426 9.23520 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.002309 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.558756 B =12123.817039 C =12310.829957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.043 4.043 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.288 1.288 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.600 5.600 10 C 0.146 3.854 11 C -0.132 4.132 12 C -0.103 4.103 13 C 0.161 3.839 14 H 0.068 0.932 15 N -0.699 5.699 16 C 0.550 3.450 17 O -0.580 6.580 18 C -0.119 4.119 19 C -0.100 4.100 20 C -0.081 4.081 21 C -0.102 4.102 22 C -0.056 4.056 23 C -0.162 4.162 24 C 0.126 3.874 25 N -0.514 5.514 26 C 0.093 3.907 27 C -0.052 4.052 28 C -0.116 4.116 29 C 0.173 3.827 30 H 0.247 0.753 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.412 0.588 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.121 0.879 44 H 0.082 0.918 45 H 0.015 0.985 46 H 0.060 0.940 47 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.115 -17.426 -6.544 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.239 4.239 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.322 5.322 10 C 0.018 3.982 11 C -0.173 4.173 12 C -0.141 4.141 13 C 0.057 3.943 14 H 0.086 0.914 15 N -0.350 5.350 16 C 0.338 3.662 17 O -0.461 6.461 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.104 4.104 22 C -0.082 4.082 23 C -0.182 4.182 24 C -0.047 4.047 25 N -0.223 5.223 26 C -0.026 4.026 27 C -0.072 4.072 28 C -0.156 4.156 29 C 0.049 3.951 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.175 0.825 39 H 0.197 0.803 40 H 0.199 0.801 41 H 0.198 0.802 42 H 0.204 0.796 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.034 0.966 46 H 0.078 0.922 47 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -19.210 -17.354 -5.043 26.375 hybrid contribution 0.197 1.414 -0.456 1.499 sum -19.014 -15.940 -5.498 25.413 Atomic orbital electron populations 1.70103 1.05944 1.25262 1.54960 1.25529 0.96020 1.00659 1.01696 0.85477 0.77667 0.80148 0.77877 1.20342 1.22208 1.21443 1.19376 0.93706 0.86494 1.39317 0.91725 1.44302 1.33724 1.01672 1.52499 1.20589 0.96602 0.86832 0.94178 1.22724 0.94743 1.00208 0.99626 1.21546 0.96150 1.01590 0.94843 1.20151 0.82140 0.93812 0.98227 0.91386 1.45971 1.18601 1.54947 1.15470 1.18674 0.86014 0.77940 0.83600 1.90761 1.66190 1.61039 1.28148 1.19854 0.94173 1.01964 0.96385 1.21217 0.95811 0.99367 0.95405 1.21336 0.94176 0.95099 0.99340 1.19304 0.96916 0.99955 0.94237 1.22014 0.91931 0.93017 1.01235 1.22419 1.03042 0.99606 0.93094 1.23688 0.88933 0.93344 0.98713 1.68008 1.12377 1.10064 1.31836 1.18836 0.94555 0.98228 0.91018 1.21148 0.93145 0.94308 0.98613 1.21107 0.97141 0.96276 1.01031 1.19914 0.86270 0.98626 0.90334 0.94379 0.94737 0.95038 0.92756 0.90490 0.90129 0.92933 0.74972 0.82522 0.80275 0.80127 0.80239 0.79585 0.86117 0.89965 0.96617 0.92209 0.97647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 9.43 21.65 0.20 -51.36 16 2 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 3 Si 0.96 44.77 29.60 68.60 2.03 46.80 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 7 C -0.26 -14.08 9.63 84.03 0.81 -13.27 16 8 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 9 N -0.60 -30.20 2.60 -707.85 -1.84 -32.05 16 10 C 0.15 6.16 5.18 87.59 0.45 6.61 16 11 C -0.13 -4.62 6.41 31.87 0.20 -4.42 16 12 C -0.10 -3.56 5.30 30.30 0.16 -3.40 16 13 C 0.16 6.05 2.17 43.91 0.10 6.15 16 14 H 0.07 2.85 5.83 -2.39 -0.01 2.83 16 15 N -0.70 -21.53 4.96 -450.56 -2.23 -23.77 16 16 C 0.55 18.99 7.62 86.80 0.66 19.65 16 17 O -0.58 -25.51 16.01 -3.88 -0.06 -25.57 16 18 C -0.12 -3.29 5.87 -20.11 -0.12 -3.41 16 19 C -0.10 -1.85 9.44 22.28 0.21 -1.63 16 20 C -0.08 -1.14 9.74 22.27 0.22 -0.93 16 21 C -0.10 -1.80 5.75 -21.23 -0.12 -1.92 16 22 C -0.06 -0.56 9.89 22.51 0.22 -0.34 16 23 C -0.16 -1.43 10.03 22.16 0.22 -1.21 16 24 C 0.13 1.86 11.15 85.10 0.95 2.81 16 25 N -0.51 -12.60 10.34 -188.66 -1.95 -14.55 16 26 C 0.09 2.38 6.60 40.25 0.27 2.64 16 27 C -0.05 -1.56 9.56 22.85 0.22 -1.34 16 28 C -0.12 -5.30 4.73 28.36 0.13 -5.17 16 29 C 0.17 8.80 5.24 83.58 0.44 9.24 16 30 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.03 1.43 7.99 -2.39 -0.02 1.41 16 32 H 0.03 1.30 6.88 -2.39 -0.02 1.28 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16 36 H 0.05 2.16 6.83 -2.39 -0.02 2.15 16 37 H 0.41 9.42 6.43 -92.71 -0.60 8.82 16 38 H 0.16 2.00 6.34 -2.91 -0.02 1.98 16 39 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 41 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 42 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.12 4.15 7.60 -2.91 -0.02 4.13 16 44 H 0.08 4.14 5.29 -2.38 -0.01 4.13 16 45 H 0.02 0.73 7.90 -2.39 -0.02 0.71 16 46 H 0.06 3.40 6.05 -2.39 -0.01 3.38 16 47 H 0.01 0.28 8.13 -2.38 -0.02 0.26 16 Total: -1.00 -75.67 371.24 1.99 -73.68 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.41 Total: 18.71 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.44 Total: 8.11 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -5.82 Total: -121.73 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.67 1.99 -73.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052801869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.690 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds