Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00348 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46985 * 299.99612 * 3 2 1 6 6 H 1.48493 * 109.47462 * 59.99808 * 3 2 1 7 7 C 1.38817 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 161.63441 * 7 2 1 9 9 N 1.36936 * 120.00244 * 341.64314 * 7 2 1 10 10 C 1.50169 * 120.53680 * 335.48015 * 9 7 2 11 11 C 1.46233 * 107.53520 * 109.56882 * 10 9 7 12 12 C 1.52526 * 114.27563 * 58.40743 * 11 10 9 13 13 C 1.50134 * 105.41771 * 270.59534 * 12 11 10 14 14 H 1.08998 * 109.20295 * 337.38324 * 13 12 11 15 15 N 1.46498 * 109.20663 * 218.02688 * 13 12 11 16 16 C 1.34778 * 119.99752 * 155.00275 * 15 13 12 17 17 O 1.21592 * 120.00057 * 359.97438 * 16 15 13 18 18 C 1.47565 * 120.00044 * 180.02562 * 16 15 13 19 19 C 1.38703 * 120.43319 * 5.33494 * 18 16 15 20 20 C 1.39005 * 120.74819 * 180.02562 * 19 18 16 21 21 C 1.36346 * 121.19148 * 359.47943 * 20 19 18 22 22 C 1.40354 * 119.92803 * 0.80111 * 21 20 19 23 23 C 1.40683 * 122.10765 * 179.18867 * 22 21 20 24 24 C 1.36262 * 118.66888 * 180.02562 * 23 22 21 25 25 N 1.32504 * 121.84020 * 359.97438 * 24 23 22 26 26 C 1.31316 * 122.72433 * 0.02562 * 25 24 23 27 27 C 1.40136 * 119.91293 * 0.26230 * 26 25 24 28 28 C 1.54835 * 110.81115 * 97.68283 * 13 12 11 29 29 C 1.43436 * 120.54064 * 155.46286 * 9 7 2 30 30 H 0.96999 * 119.99259 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.84250 * 350.06277 * 10 9 7 32 32 H 1.09001 * 109.90352 * 229.10980 * 10 9 7 33 33 H 1.09003 * 108.52315 * 297.16364 * 11 10 9 34 34 H 1.08999 * 108.52686 * 179.64775 * 11 10 9 35 35 H 1.09003 * 110.24894 * 151.62588 * 12 11 10 36 36 H 1.08998 * 110.24922 * 29.56967 * 12 11 10 37 37 H 0.96993 * 120.00515 * 334.99993 * 15 13 12 38 38 H 1.07997 * 119.62644 * 0.02562 * 19 18 16 39 39 H 1.07998 * 119.40095 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.03442 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.66268 * 359.97438 * 23 22 21 42 42 H 1.07995 * 119.07633 * 179.97438 * 24 23 22 43 43 H 1.07993 * 120.04290 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.36292 * 81.34284 * 28 13 12 45 45 H 1.09002 * 109.35959 * 200.92374 * 28 13 12 46 46 H 1.09002 * 108.15463 * 33.30275 * 29 9 7 47 47 H 1.08998 * 108.15729 * 150.08100 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0490 -1.2262 -0.2942 9 7 1.3778 -2.3578 0.3745 10 6 0.1786 -2.3134 1.2774 11 6 -0.9899 -2.6752 0.4760 12 6 -0.9002 -4.0501 -0.1783 13 6 -0.2474 -3.8165 -1.5100 14 1 -0.3913 -2.7763 -1.8023 15 7 -0.8679 -4.6885 -2.5104 16 6 -0.8414 -4.3446 -3.8133 17 8 -0.3029 -3.3104 -4.1583 18 6 -1.4669 -5.2225 -4.8210 19 6 -2.1794 -6.3461 -4.4287 20 6 -2.7708 -7.1779 -5.3724 21 6 -2.6782 -6.9106 -6.7062 22 6 -1.9614 -5.7874 -7.1472 23 6 -1.8224 -5.4777 -8.5124 24 6 -1.1107 -4.3696 -8.8622 25 7 -0.5512 -3.5828 -7.9546 26 6 -0.6407 -3.8117 -6.6647 27 6 -1.3465 -4.9299 -6.2006 28 6 1.2693 -4.1201 -1.4400 29 6 1.8497 -3.6302 -0.0900 30 1 -0.4849 0.8401 -0.0004 31 1 0.0549 -1.3077 1.6790 32 1 0.3022 -3.0251 2.0937 33 1 -1.1184 -1.9271 -0.3062 34 1 -1.8703 -2.6542 1.1183 35 1 -1.8974 -4.4685 -0.3152 36 1 -0.2895 -4.7179 0.4292 37 1 -1.2978 -5.5132 -2.2352 38 1 -2.2758 -6.5772 -3.3782 39 1 -3.3210 -8.0468 -5.0427 40 1 -3.1453 -7.5694 -7.4233 41 1 -2.2701 -6.1061 -9.2681 42 1 -0.9994 -4.1259 -9.9084 43 1 -0.1671 -3.1416 -5.9626 44 1 1.4274 -5.1946 -1.5326 45 1 1.7779 -3.6104 -2.2583 46 1 2.9341 -3.5758 -0.1861 47 1 1.6150 -4.3770 0.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052835842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = 56.694385 kcal Electronic energy + Delta-G solvation = -29523.353933 eV Core-core repulsion = 25672.044615 eV Total energy + Delta-G solvation = -3851.309318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.17225 -39.50930 -37.78466 -37.25514 -34.75457 -33.13696 -32.30173 -31.56245 -31.34013 -30.40375 -29.26878 -26.21106 -24.88234 -24.11840 -23.65259 -23.53248 -22.43991 -20.69800 -19.91144 -19.17003 -18.06786 -17.81837 -16.88859 -16.61811 -16.23347 -15.58481 -15.22261 -15.02276 -14.77386 -14.71878 -14.28699 -13.85785 -13.83534 -13.72876 -13.42158 -13.18402 -12.86278 -12.45416 -12.25760 -12.24244 -12.23284 -11.88029 -11.73740 -11.46334 -11.22645 -10.76891 -10.64445 -10.35237 -10.27926 -10.23000 -10.03890 -9.78055 -9.62633 -9.49422 -9.35041 -9.33651 -9.29288 -8.67792 -8.38553 -8.23314 -6.66621 -5.74635 -3.14908 -0.05113 0.69685 1.51566 2.62249 3.28252 3.32440 3.42923 3.51783 3.53343 3.99715 4.32229 4.37350 4.49291 4.56420 4.59841 4.72095 4.74602 4.87440 5.09094 5.32666 5.39378 5.41761 5.51950 5.53306 5.54906 5.69764 5.75968 5.83319 5.89863 5.94706 6.01609 6.09675 6.25988 6.28436 6.39556 6.43134 6.47560 6.62908 6.71431 6.87506 6.89945 6.93650 7.01866 7.10773 7.21996 7.59684 7.74191 7.79723 7.96832 8.00004 8.43013 8.47847 9.23861 9.90673 10.43074 11.33038 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.003111 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.820285 B = 8997.513943 C =10247.124191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.154 3.846 14 H 0.106 0.894 15 N -0.716 5.716 16 C 0.550 3.450 17 O -0.520 6.520 18 C -0.089 4.089 19 C -0.087 4.087 20 C -0.106 4.106 21 C -0.093 4.093 22 C -0.029 4.029 23 C -0.169 4.169 24 C 0.079 3.921 25 N -0.491 5.491 26 C 0.151 3.849 27 C -0.082 4.082 28 C -0.151 4.151 29 C 0.162 3.838 30 H 0.252 0.748 31 H 0.090 0.910 32 H 0.006 0.994 33 H 0.105 0.895 34 H 0.029 0.971 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.391 0.609 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.203 0.797 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.034 0.966 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 -17.568 -9.836 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.124 0.876 15 N -0.366 5.366 16 C 0.337 3.663 17 O -0.398 6.398 18 C -0.095 4.095 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.112 4.112 22 C -0.034 4.034 23 C -0.189 4.189 24 C -0.064 4.064 25 N -0.199 5.199 26 C -0.019 4.019 27 C -0.085 4.085 28 C -0.194 4.194 29 C 0.032 3.968 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.024 0.976 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.225 0.775 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.219 0.781 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.433 -15.938 -10.463 20.463 hybrid contribution -0.512 -0.506 0.112 0.728 sum -7.945 -16.444 -10.351 20.992 Atomic orbital electron populations 1.69943 1.05077 1.25099 1.54397 1.24911 0.95255 0.98217 1.00974 0.86255 0.79408 0.84183 0.77128 1.20417 1.21806 1.21751 1.19236 0.93193 0.85071 1.40333 0.91499 1.44258 1.33649 1.01209 1.51807 1.20142 0.85283 1.00382 0.89998 1.20944 0.98447 0.95228 1.02295 1.21370 0.98648 0.99931 0.95975 1.21380 0.92144 0.95433 0.85857 0.87569 1.46474 1.57846 1.25710 1.06570 1.18082 0.80037 0.85466 0.82765 1.90631 1.44884 1.25031 1.79253 1.20119 1.00040 0.96397 0.92894 1.21426 0.95690 0.93234 1.00214 1.20889 0.99141 0.99538 0.92908 1.21121 0.97764 0.95905 0.96374 1.18166 0.96769 0.95009 0.93490 1.21843 1.02303 0.99810 0.94914 1.22346 0.93505 0.91056 0.99496 1.67712 1.19256 1.30156 1.02759 1.24756 0.91294 0.93615 0.92229 1.18906 0.99785 0.97302 0.92505 1.23317 0.95105 0.98555 1.02388 1.20354 0.96450 0.88364 0.91593 0.93821 0.89223 0.97603 0.87709 0.95184 0.92866 0.91795 0.77479 0.84991 0.84906 0.84860 0.84551 0.83144 0.78080 0.93700 0.92330 0.94771 0.95370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 9.38 55.49 0.52 -24.37 16 2 C 0.00 0.12 4.93 -17.43 -0.09 0.04 16 3 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.72 9.62 -15.06 -0.14 -6.86 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 9 N -0.59 -14.12 2.60 -175.08 -0.45 -14.57 16 10 C 0.17 3.72 5.24 -5.21 -0.03 3.70 16 11 C -0.13 -2.66 5.01 -30.19 -0.15 -2.81 16 12 C -0.12 -2.03 5.34 -28.40 -0.15 -2.18 16 13 C 0.15 2.82 2.22 -68.39 -0.15 2.67 16 14 H 0.11 2.52 6.26 -51.93 -0.33 2.20 16 15 N -0.72 -10.53 4.92 -55.29 -0.27 -10.80 16 16 C 0.55 9.00 7.69 -12.46 -0.10 8.90 16 17 O -0.52 -10.63 13.13 5.28 0.07 -10.56 16 18 C -0.09 -1.20 5.90 -104.66 -0.62 -1.82 16 19 C -0.09 -0.84 9.51 -39.13 -0.37 -1.21 16 20 C -0.11 -0.84 9.93 -39.98 -0.40 -1.23 16 21 C -0.09 -0.80 9.79 -39.47 -0.39 -1.19 16 22 C -0.03 -0.34 5.74 -106.84 -0.61 -0.95 16 23 C -0.17 -1.72 9.88 -39.37 -0.39 -2.11 16 24 C 0.08 0.94 11.07 -17.97 -0.20 0.74 16 25 N -0.49 -7.54 10.30 -13.22 -0.14 -7.68 16 26 C 0.15 2.43 10.49 -17.06 -0.18 2.25 16 27 C -0.08 -1.17 5.76 -106.58 -0.61 -1.78 16 28 C -0.15 -2.86 5.98 -24.76 -0.15 -3.01 16 29 C 0.16 3.32 5.18 -4.66 -0.02 3.30 16 30 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.09 2.28 6.11 -51.93 -0.32 1.96 16 32 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 33 H 0.10 2.56 5.23 -51.93 -0.27 2.29 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 36 H 0.06 1.02 6.28 -51.93 -0.33 0.69 16 37 H 0.39 4.27 6.54 -40.82 -0.27 4.01 16 38 H 0.13 0.93 6.41 -52.49 -0.34 0.59 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.20 3.65 4.97 -52.49 -0.26 3.39 16 44 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.03 0.71 7.99 -51.93 -0.42 0.29 16 47 H 0.03 0.52 6.88 -51.93 -0.36 0.16 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -31.49 366.02 -10.75 -42.24 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.21 Total: 6.94 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.75 Total: -3.57 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.34 Total: -57.42 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.49 -10.75 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052835842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.933 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds