Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00348 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46985 * 299.99612 * 3 2 1 6 6 H 1.48493 * 109.47462 * 59.99808 * 3 2 1 7 7 C 1.38817 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 161.63441 * 7 2 1 9 9 N 1.36936 * 120.00244 * 341.64314 * 7 2 1 10 10 C 1.50169 * 120.53680 * 335.48015 * 9 7 2 11 11 C 1.46233 * 107.53520 * 109.56882 * 10 9 7 12 12 C 1.52526 * 114.27563 * 58.40743 * 11 10 9 13 13 C 1.50134 * 105.41771 * 270.59534 * 12 11 10 14 14 H 1.08998 * 109.20295 * 337.38324 * 13 12 11 15 15 N 1.46498 * 109.20663 * 218.02688 * 13 12 11 16 16 C 1.34778 * 119.99752 * 155.00275 * 15 13 12 17 17 O 1.21592 * 120.00057 * 359.97438 * 16 15 13 18 18 C 1.47565 * 120.00044 * 180.02562 * 16 15 13 19 19 C 1.38703 * 120.43319 * 5.33494 * 18 16 15 20 20 C 1.39005 * 120.74819 * 180.02562 * 19 18 16 21 21 C 1.36346 * 121.19148 * 359.47943 * 20 19 18 22 22 C 1.40354 * 119.92803 * 0.80111 * 21 20 19 23 23 C 1.40683 * 122.10765 * 179.18867 * 22 21 20 24 24 C 1.36262 * 118.66888 * 180.02562 * 23 22 21 25 25 N 1.32504 * 121.84020 * 359.97438 * 24 23 22 26 26 C 1.31316 * 122.72433 * 0.02562 * 25 24 23 27 27 C 1.40136 * 119.91293 * 0.26230 * 26 25 24 28 28 C 1.54835 * 110.81115 * 97.68283 * 13 12 11 29 29 C 1.43436 * 120.54064 * 155.46286 * 9 7 2 30 30 H 0.96999 * 119.99259 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.84250 * 350.06277 * 10 9 7 32 32 H 1.09001 * 109.90352 * 229.10980 * 10 9 7 33 33 H 1.09003 * 108.52315 * 297.16364 * 11 10 9 34 34 H 1.08999 * 108.52686 * 179.64775 * 11 10 9 35 35 H 1.09003 * 110.24894 * 151.62588 * 12 11 10 36 36 H 1.08998 * 110.24922 * 29.56967 * 12 11 10 37 37 H 0.96993 * 120.00515 * 334.99993 * 15 13 12 38 38 H 1.07997 * 119.62644 * 0.02562 * 19 18 16 39 39 H 1.07998 * 119.40095 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.03442 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.66268 * 359.97438 * 23 22 21 42 42 H 1.07995 * 119.07633 * 179.97438 * 24 23 22 43 43 H 1.07993 * 120.04290 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.36292 * 81.34284 * 28 13 12 45 45 H 1.09002 * 109.35959 * 200.92374 * 28 13 12 46 46 H 1.09002 * 108.15463 * 33.30275 * 29 9 7 47 47 H 1.08998 * 108.15729 * 150.08100 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0490 -1.2262 -0.2942 9 7 1.3778 -2.3578 0.3745 10 6 0.1786 -2.3134 1.2774 11 6 -0.9899 -2.6752 0.4760 12 6 -0.9002 -4.0501 -0.1783 13 6 -0.2474 -3.8165 -1.5100 14 1 -0.3913 -2.7763 -1.8023 15 7 -0.8679 -4.6885 -2.5104 16 6 -0.8414 -4.3446 -3.8133 17 8 -0.3029 -3.3104 -4.1583 18 6 -1.4669 -5.2225 -4.8210 19 6 -2.1794 -6.3461 -4.4287 20 6 -2.7708 -7.1779 -5.3724 21 6 -2.6782 -6.9106 -6.7062 22 6 -1.9614 -5.7874 -7.1472 23 6 -1.8224 -5.4777 -8.5124 24 6 -1.1107 -4.3696 -8.8622 25 7 -0.5512 -3.5828 -7.9546 26 6 -0.6407 -3.8117 -6.6647 27 6 -1.3465 -4.9299 -6.2006 28 6 1.2693 -4.1201 -1.4400 29 6 1.8497 -3.6302 -0.0900 30 1 -0.4849 0.8401 -0.0004 31 1 0.0549 -1.3077 1.6790 32 1 0.3022 -3.0251 2.0937 33 1 -1.1184 -1.9271 -0.3062 34 1 -1.8703 -2.6542 1.1183 35 1 -1.8974 -4.4685 -0.3152 36 1 -0.2895 -4.7179 0.4292 37 1 -1.2978 -5.5132 -2.2352 38 1 -2.2758 -6.5772 -3.3782 39 1 -3.3210 -8.0468 -5.0427 40 1 -3.1453 -7.5694 -7.4233 41 1 -2.2701 -6.1061 -9.2681 42 1 -0.9994 -4.1259 -9.9084 43 1 -0.1671 -3.1416 -5.9626 44 1 1.4274 -5.1946 -1.5326 45 1 1.7779 -3.6104 -2.2583 46 1 2.9341 -3.5758 -0.1861 47 1 1.6150 -4.3770 0.6684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052835842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = 36.671948 kcal Electronic energy + Delta-G solvation = -29524.222171 eV Core-core repulsion = 25672.044615 eV Total energy + Delta-G solvation = -3852.177556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12503 -40.77616 -39.28674 -38.18697 -36.34014 -34.27531 -33.78729 -33.30275 -32.18868 -31.88591 -30.40405 -27.97169 -25.97440 -25.64912 -24.96997 -24.45715 -23.77860 -22.08883 -21.34499 -20.78459 -19.02297 -18.81203 -18.53168 -17.74168 -17.25346 -16.94565 -16.86970 -16.25854 -16.17396 -15.72622 -15.63669 -15.45506 -15.09758 -14.90767 -14.64309 -14.58915 -13.99100 -13.90415 -13.72012 -13.47150 -13.22070 -13.17288 -13.05541 -13.00488 -12.73381 -12.54968 -12.32696 -12.09599 -11.93032 -11.73589 -11.55950 -11.20164 -11.18348 -11.10642 -10.82721 -10.45113 -10.38431 -10.18264 -10.02420 -9.09899 -8.61404 -7.82848 -5.23909 -0.91700 -0.12543 0.57377 1.42902 1.46619 1.54949 1.74546 2.11595 2.23796 2.53609 3.07257 3.30630 3.46989 3.55144 3.63734 3.71188 3.75418 3.84875 3.94998 4.04665 4.13383 4.19909 4.34243 4.39119 4.50661 4.60376 4.65484 4.70541 4.75395 4.79595 4.88554 4.88834 4.90866 5.03211 5.11280 5.19779 5.20134 5.30779 5.32280 5.33961 5.42181 5.52753 5.66649 5.67688 5.70014 5.79020 5.81009 6.23472 6.44132 6.56829 6.99869 7.20675 7.27691 7.93945 8.41239 9.20970 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.003111 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.820285 B = 8997.513943 C =10247.124191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.042 4.042 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.285 1.285 7 C -0.260 4.260 8 H 0.056 0.944 9 N -0.602 5.602 10 C 0.167 3.833 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.168 3.832 14 H 0.041 0.959 15 N -0.701 5.701 16 C 0.544 3.456 17 O -0.578 6.578 18 C -0.132 4.132 19 C -0.056 4.056 20 C -0.104 4.104 21 C -0.073 4.073 22 C -0.051 4.051 23 C -0.140 4.140 24 C 0.048 3.952 25 N -0.518 5.518 26 C 0.106 3.894 27 C -0.096 4.096 28 C -0.141 4.141 29 C 0.157 3.843 30 H 0.245 0.755 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.414 0.586 38 H 0.163 0.837 39 H 0.181 0.819 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.178 0.822 43 H 0.164 0.836 44 H 0.081 0.919 45 H 0.015 0.985 46 H 0.025 0.975 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -22.989 -10.147 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.238 4.238 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.229 1.229 6 H -0.212 1.212 7 C -0.391 4.391 8 H 0.074 0.926 9 N -0.324 5.324 10 C 0.044 3.956 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.064 3.936 14 H 0.060 0.940 15 N -0.353 5.353 16 C 0.333 3.667 17 O -0.459 6.459 18 C -0.137 4.137 19 C -0.075 4.075 20 C -0.123 4.123 21 C -0.090 4.090 22 C -0.056 4.056 23 C -0.159 4.159 24 C -0.096 4.096 25 N -0.227 5.227 26 C -0.063 4.063 27 C -0.099 4.099 28 C -0.183 4.183 29 C 0.028 3.972 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.181 0.819 39 H 0.198 0.802 40 H 0.195 0.805 41 H 0.202 0.798 42 H 0.195 0.805 43 H 0.180 0.820 44 H 0.099 0.901 45 H 0.034 0.966 46 H 0.043 0.957 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.021 -21.415 -10.746 25.971 hybrid contribution 0.231 1.049 0.109 1.080 sum -9.790 -20.366 -10.637 24.975 Atomic orbital electron populations 1.70124 1.05787 1.24883 1.55205 1.25522 0.96054 1.00615 1.01635 0.85427 0.78693 0.81103 0.76526 1.19765 1.22945 1.21197 1.19389 0.93021 0.86716 1.39950 0.92639 1.44424 1.34063 1.01503 1.52431 1.20112 0.85561 0.99198 0.90712 1.20756 0.98206 0.96432 1.01011 1.21276 1.00885 0.97983 0.94151 1.20859 0.92235 0.92878 0.87621 0.94037 1.46138 1.57580 1.26009 1.05524 1.18725 0.79204 0.85165 0.83593 1.90638 1.47348 1.27740 1.80194 1.19837 1.03798 0.98444 0.91636 1.21899 0.92275 0.90808 1.02490 1.21427 0.98460 1.00225 0.92194 1.21672 0.95261 0.94260 0.97827 1.18573 0.97532 0.95946 0.93573 1.22357 0.99476 0.98600 0.95433 1.22842 0.94716 0.92034 0.99970 1.67544 1.20262 1.31904 1.03036 1.24206 0.94387 0.95424 0.92310 1.18996 0.99955 0.97140 0.93771 1.23180 0.95211 1.00044 0.99873 1.20492 0.95949 0.87694 0.93052 0.94572 0.92833 0.94708 0.92294 0.93492 0.89305 0.89525 0.74724 0.81945 0.80164 0.80463 0.79826 0.80522 0.81952 0.90050 0.96599 0.95679 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.63 9.38 21.65 0.20 -53.42 16 2 C -0.04 -2.42 4.93 84.86 0.42 -2.00 16 3 Si 0.95 47.23 29.59 68.60 2.03 49.26 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.26 -14.76 9.62 84.03 0.81 -13.95 16 8 H 0.06 3.20 7.88 -2.91 -0.02 3.18 16 9 N -0.60 -29.74 2.60 -707.83 -1.84 -31.57 16 10 C 0.17 7.59 5.24 83.58 0.44 8.03 16 11 C -0.12 -5.12 5.01 28.35 0.14 -4.98 16 12 C -0.11 -3.29 5.34 29.51 0.16 -3.14 16 13 C 0.17 6.28 2.22 44.69 0.10 6.38 16 14 H 0.04 2.14 6.26 -2.39 -0.01 2.13 16 15 N -0.70 -20.35 4.92 -447.09 -2.20 -22.55 16 16 C 0.54 18.91 7.69 86.70 0.67 19.58 16 17 O -0.58 -26.77 13.13 -4.01 -0.05 -26.83 16 18 C -0.13 -3.52 5.90 -19.89 -0.12 -3.64 16 19 C -0.06 -0.86 9.51 22.57 0.21 -0.64 16 20 C -0.10 -1.00 9.93 22.01 0.22 -0.78 16 21 C -0.07 -0.82 9.79 22.34 0.22 -0.60 16 22 C -0.05 -1.04 5.74 -21.30 -0.12 -1.16 16 23 C -0.14 -2.44 9.88 22.41 0.22 -2.22 16 24 C 0.05 1.12 11.07 84.13 0.93 2.05 16 25 N -0.52 -17.38 10.30 -195.74 -2.02 -19.40 16 26 C 0.11 3.83 10.49 85.23 0.89 4.72 16 27 C -0.10 -2.81 5.76 -21.14 -0.12 -2.93 16 28 C -0.14 -5.44 5.98 31.87 0.19 -5.25 16 29 C 0.16 6.41 5.18 87.59 0.45 6.87 16 30 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.05 2.81 6.11 -2.39 -0.01 2.80 16 32 H 0.03 1.37 8.13 -2.39 -0.02 1.35 16 33 H 0.06 3.03 5.23 -2.39 -0.01 3.02 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 2.17 7.85 -2.39 -0.02 2.15 16 36 H 0.09 2.38 6.28 -2.39 -0.01 2.37 16 37 H 0.41 7.73 6.54 -92.71 -0.61 7.13 16 38 H 0.16 1.38 6.41 -2.91 -0.02 1.36 16 39 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 40 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.16 7.05 4.97 -2.94 -0.01 7.04 16 44 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 45 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.02 1.06 7.99 -2.39 -0.02 1.04 16 47 H 0.06 2.13 6.88 -2.39 -0.02 2.11 16 Total: -1.00 -81.75 366.02 2.24 -79.51 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.40 Total: 18.66 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.71 Total: 6.35 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -5.85 Total: -126.95 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -81.75 2.24 -79.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052835842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.180 kcal (2) G-P(sol) polarization free energy of solvation -81.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds