Wall clock time and date at job start Tue Mar 31 2020 22:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48505 * 109.47256 * 274.22681 * 3 2 1 5 5 H 1.48502 * 109.47223 * 34.22548 * 3 2 1 6 6 H 1.48499 * 109.47414 * 154.22826 * 3 2 1 7 7 C 1.38807 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00498 * 160.12366 * 7 2 1 9 9 N 1.36940 * 120.00049 * 340.39492 * 7 2 1 10 10 C 1.50166 * 120.53611 * 336.41201 * 9 7 2 11 11 C 1.46238 * 107.53359 * 109.56355 * 10 9 7 12 12 C 1.52522 * 114.27766 * 58.41072 * 11 10 9 13 13 C 1.50130 * 105.41039 * 270.59178 * 12 11 10 14 14 H 1.08999 * 109.21026 * 337.38294 * 13 12 11 15 15 N 1.46504 * 109.20813 * 218.02877 * 13 12 11 16 16 C 1.34772 * 120.00161 * 154.99656 * 15 13 12 17 17 O 1.21549 * 119.99694 * 0.02562 * 16 15 13 18 18 C 1.47888 * 119.99977 * 179.97438 * 16 15 13 19 19 C 1.40599 * 119.73063 * 359.73725 * 18 16 15 20 20 C 1.35848 * 120.95019 * 179.70393 * 19 18 16 21 21 C 1.40492 * 119.88261 * 0.55828 * 20 19 18 22 22 C 1.40484 * 121.84577 * 179.74297 * 21 20 19 23 23 N 1.31216 * 119.94068 * 179.97438 * 22 21 20 24 24 C 1.32553 * 122.80591 * 359.97438 * 23 22 21 25 25 C 1.36224 * 121.84489 * 0.02562 * 24 23 22 26 26 C 1.40757 * 118.67593 * 0.02562 * 25 24 23 27 27 C 1.38536 * 119.72722 * 180.02562 * 18 16 15 28 28 C 1.54840 * 110.81469 * 97.68512 * 13 12 11 29 29 C 1.43436 * 120.53588 * 156.12456 * 9 7 2 30 30 H 0.97002 * 120.00237 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.84390 * 229.06940 * 10 9 7 32 32 H 1.09003 * 109.84422 * 350.05447 * 10 9 7 33 33 H 1.09004 * 108.51746 * 179.64904 * 11 10 9 34 34 H 1.09000 * 108.52306 * 297.31799 * 11 10 9 35 35 H 1.09003 * 110.25271 * 29.56300 * 12 11 10 36 36 H 1.09000 * 110.24849 * 151.62328 * 12 11 10 37 37 H 0.97001 * 119.99866 * 335.00251 * 15 13 12 38 38 H 1.07997 * 119.52337 * 359.97438 * 19 18 16 39 39 H 1.08005 * 120.05882 * 180.25510 * 20 19 18 40 40 H 1.08003 * 120.02932 * 359.97438 * 22 21 20 41 41 H 1.07993 * 119.08139 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.66086 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.36506 * 359.97438 * 27 18 16 44 44 H 1.09005 * 109.35758 * 81.33912 * 28 13 12 45 45 H 1.09007 * 109.35877 * 200.92239 * 28 13 12 46 46 H 1.09004 * 108.15830 * 33.31613 * 29 9 7 47 47 H 1.09008 * 108.15507 * 149.87519 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4084 2.0980 -1.3963 5 1 1.4953 2.6252 0.7875 6 1 3.5896 1.4160 0.6087 7 6 2.0102 -1.2021 -0.0005 8 1 3.0420 -1.2299 -0.3185 9 7 1.3851 -2.3538 0.3969 10 6 0.1904 -2.2992 1.3050 11 6 -0.9805 -2.6801 0.5161 12 6 -0.8879 -4.0658 -0.1146 13 6 -0.2431 -3.8524 -1.4535 14 1 -0.3932 -2.8181 -1.7631 15 7 -0.8647 -4.7443 -2.4355 16 6 -0.8466 -4.4230 -3.7442 17 8 -0.3141 -3.3933 -4.1098 18 6 -1.4736 -5.3237 -4.7355 19 6 -2.0822 -6.5165 -4.3071 20 6 -2.6707 -7.3590 -5.1956 21 6 -2.6652 -7.0468 -6.5654 22 6 -3.2566 -7.8906 -7.5202 23 7 -3.2302 -7.5621 -8.7904 24 6 -2.6622 -6.4492 -9.2327 25 6 -2.0616 -5.5643 -8.3888 26 6 -2.0483 -5.8482 -7.0102 27 6 -1.4513 -4.9881 -6.0795 28 6 1.2753 -4.1479 -1.3863 29 6 1.8571 -3.6316 -0.0525 30 1 -0.4850 0.8400 -0.0004 31 1 0.3222 -2.9967 2.1322 32 1 0.0641 -1.2872 1.6898 33 1 -1.8577 -2.6519 1.1626 34 1 -1.1148 -1.9479 -0.2801 35 1 -0.2710 -4.7202 0.5012 36 1 -1.8839 -4.4909 -0.2390 37 1 -1.2894 -5.5662 -2.1437 38 1 -2.0857 -6.7644 -3.2559 39 1 -3.1376 -8.2695 -4.8501 40 1 -3.7325 -8.8089 -7.2092 41 1 -2.6758 -6.2379 -10.2916 42 1 -1.6049 -4.6629 -8.7700 43 1 -0.9793 -4.0732 -6.4059 44 1 1.4378 -5.2231 -1.4610 45 1 1.7774 -3.6501 -2.2160 46 1 2.9404 -3.5753 -0.1591 47 1 1.6351 -4.3669 0.7210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052846437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:33 Heat of formation + Delta-G solvation = 49.375742 kcal Electronic energy + Delta-G solvation = -28942.172529 eV Core-core repulsion = 25090.545851 eV Total energy + Delta-G solvation = -3851.626679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.15542 -39.72480 -37.94099 -36.98523 -34.72162 -33.31431 -32.49359 -31.65182 -31.42814 -29.91407 -29.75747 -26.31284 -25.17840 -24.07109 -23.94543 -22.99637 -22.38731 -20.86913 -20.05904 -19.15663 -18.29826 -17.86957 -16.93870 -16.60253 -16.27700 -15.52975 -15.22249 -15.12655 -14.74882 -14.47650 -14.28392 -13.97748 -13.92491 -13.80908 -13.75226 -13.22702 -13.08919 -12.72555 -12.40726 -12.25034 -12.22830 -11.85967 -11.47879 -11.39045 -11.25145 -10.76293 -10.64060 -10.55261 -10.38673 -10.26099 -10.06805 -9.88155 -9.77751 -9.54801 -9.49883 -9.37380 -9.34537 -8.62425 -8.41221 -8.34552 -6.69020 -5.76183 -3.14856 -0.04905 0.40640 1.56376 2.38388 3.34940 3.36312 3.41584 3.49112 3.51224 3.84182 4.07302 4.20337 4.40448 4.44990 4.54982 4.63829 4.70956 4.88085 4.94692 5.27606 5.33971 5.37135 5.40398 5.42043 5.54436 5.61926 5.69647 5.73590 5.85076 5.96337 5.99784 6.04784 6.24963 6.28459 6.29953 6.39014 6.42773 6.46636 6.69220 6.84911 6.88971 6.92892 7.01096 7.11502 7.21019 7.58698 7.62831 7.76582 7.79962 7.98173 8.45924 8.46126 9.22244 9.89661 10.41882 11.31580 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.002491 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.841704 B =11239.562030 C =12072.591593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.154 3.846 14 H 0.104 0.896 15 N -0.720 5.720 16 C 0.545 3.455 17 O -0.523 6.523 18 C -0.105 4.105 19 C -0.093 4.093 20 C -0.093 4.093 21 C -0.100 4.100 22 C 0.142 3.858 23 N -0.486 5.486 24 C 0.070 3.930 25 C -0.143 4.143 26 C -0.033 4.033 27 C -0.047 4.047 28 C -0.151 4.151 29 C 0.162 3.838 30 H 0.252 0.748 31 H 0.007 0.993 32 H 0.090 0.910 33 H 0.030 0.970 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.390 0.610 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.033 0.967 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.823 -17.054 -9.790 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.052 3.948 14 H 0.122 0.878 15 N -0.371 5.371 16 C 0.331 3.669 17 O -0.400 6.400 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.102 4.102 22 C -0.030 4.030 23 N -0.194 5.194 24 C -0.073 4.073 25 C -0.162 4.162 26 C -0.038 4.038 27 C -0.066 4.066 28 C -0.193 4.193 29 C 0.032 3.968 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.225 0.775 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.858 -16.565 -10.726 21.241 hybrid contribution 0.518 1.007 0.531 1.251 sum -7.340 -15.558 -10.194 19.996 Atomic orbital electron populations 1.69952 1.05085 1.25197 1.54249 1.24890 0.95231 0.98239 1.01127 0.86324 0.79234 0.83949 0.77535 1.21611 1.21684 1.20611 1.19189 0.93698 0.85257 1.39663 0.91530 1.44292 1.34168 1.00956 1.51484 1.20156 0.85269 1.00517 0.89875 1.20945 0.98521 0.95020 1.02438 1.21371 0.98721 0.99890 0.95957 1.21351 0.92100 0.94975 0.86358 0.87780 1.46472 1.58321 1.25639 1.06621 1.18227 0.80180 0.85686 0.82825 1.90844 1.44361 1.25166 1.79620 1.20254 1.00507 0.95839 0.94367 1.21013 0.96616 0.93220 1.00301 1.20861 0.99209 0.99933 0.91267 1.19148 0.99990 0.95670 0.95436 1.23234 0.94197 0.97928 0.87610 1.67381 1.16314 1.18153 1.17515 1.22188 0.94808 0.89813 1.00467 1.22032 1.00427 1.01275 0.92512 1.18165 0.97407 0.94219 0.94052 1.21488 0.95217 0.98636 0.91250 1.23232 0.95207 0.98559 1.02314 1.20254 0.96464 0.88295 0.91811 0.93790 0.97536 0.89177 0.95124 0.87838 0.91788 0.92836 0.77540 0.85081 0.84359 0.81829 0.82834 0.84039 0.83483 0.93651 0.92473 0.94857 0.95344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 9.43 55.49 0.52 -24.44 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.82 29.60 -169.99 -5.03 16.79 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.73 9.62 -15.06 -0.14 -6.88 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 9 N -0.59 -14.20 2.61 -175.40 -0.46 -14.66 16 10 C 0.17 3.74 5.25 -5.21 -0.03 3.71 16 11 C -0.13 -2.69 5.02 -30.19 -0.15 -2.84 16 12 C -0.12 -2.06 5.34 -28.40 -0.15 -2.21 16 13 C 0.15 2.88 2.22 -68.39 -0.15 2.73 16 14 H 0.10 2.52 6.26 -51.93 -0.33 2.20 16 15 N -0.72 -10.81 4.92 -55.18 -0.27 -11.09 16 16 C 0.55 9.04 7.72 -12.31 -0.10 8.95 16 17 O -0.52 -11.19 15.97 5.32 0.08 -11.10 16 18 C -0.11 -1.35 5.87 -104.95 -0.62 -1.97 16 19 C -0.09 -0.88 9.44 -39.55 -0.37 -1.26 16 20 C -0.09 -0.75 9.77 -39.59 -0.39 -1.14 16 21 C -0.10 -0.97 5.75 -106.78 -0.61 -1.59 16 22 C 0.14 1.24 11.04 -16.97 -0.19 1.05 16 23 N -0.49 -4.97 10.29 -13.15 -0.14 -5.11 16 24 C 0.07 0.64 11.07 -17.97 -0.20 0.44 16 25 C -0.14 -1.35 9.88 -39.35 -0.39 -1.73 16 26 C -0.03 -0.37 5.74 -106.83 -0.61 -0.98 16 27 C -0.05 -0.59 9.38 -38.78 -0.36 -0.95 16 28 C -0.15 -2.89 5.97 -25.03 -0.15 -3.04 16 29 C 0.16 3.34 5.13 -4.93 -0.03 3.31 16 30 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 32 H 0.09 2.29 6.08 -51.93 -0.32 1.98 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 2.55 5.26 -51.93 -0.27 2.28 16 35 H 0.06 1.03 6.28 -51.93 -0.33 0.71 16 36 H 0.05 0.77 7.85 -51.93 -0.41 0.37 16 37 H 0.39 4.37 6.46 -40.82 -0.26 4.11 16 38 H 0.13 0.93 6.34 -52.49 -0.33 0.59 16 39 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.15 1.88 7.62 -52.49 -0.40 1.48 16 44 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 45 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 46 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 47 H 0.03 0.53 6.89 -51.92 -0.36 0.17 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -32.35 371.25 -10.76 -43.11 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.35 Total: 5.29 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.72 Total: -4.39 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.34 Total: -55.29 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.35 -10.76 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052846437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.490 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds