Wall clock time and date at job start Tue Mar 31 2020 23:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99673 * 2 1 4 4 H 1.48500 * 109.47193 * 275.57037 * 3 2 1 5 5 H 1.48506 * 109.47159 * 35.57248 * 3 2 1 6 6 H 1.48499 * 109.47202 * 155.56648 * 3 2 1 7 7 C 1.38808 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99987 * 336.34825 * 7 2 1 9 9 N 1.36936 * 120.00119 * 156.34542 * 7 2 1 10 10 C 1.50170 * 120.53513 * 140.24463 * 9 7 2 11 11 C 1.46240 * 107.58691 * 109.60798 * 10 9 7 12 12 C 1.52521 * 114.27680 * 58.37370 * 11 10 9 13 13 C 1.50129 * 105.41551 * 270.59232 * 12 11 10 14 14 H 1.09002 * 109.20733 * 337.38719 * 13 12 11 15 15 N 1.46498 * 109.21080 * 218.03357 * 13 12 11 16 16 C 1.34774 * 120.00360 * 154.99860 * 15 13 12 17 17 O 1.21602 * 120.00020 * 359.97438 * 16 15 13 18 18 C 1.47443 * 120.00072 * 179.97438 * 16 15 13 19 19 C 1.38948 * 121.17350 * 359.97438 * 18 16 15 20 20 N 1.32194 * 121.31773 * 180.02562 * 19 18 16 21 21 C 1.31195 * 123.69918 * 0.02562 * 20 19 18 22 22 C 1.40377 * 120.91436 * 359.97438 * 21 20 19 23 23 C 1.40401 * 122.14505 * 180.02562 * 22 21 20 24 24 C 1.36224 * 119.48575 * 179.97438 * 23 22 21 25 25 C 1.39295 * 121.10920 * 0.02562 * 24 23 22 26 26 C 1.36435 * 120.94480 * 0.02562 * 25 24 23 27 27 C 1.39691 * 119.43729 * 359.72649 * 26 25 24 28 28 C 1.54840 * 110.81697 * 97.68374 * 13 12 11 29 29 C 1.43406 * 120.51527 * 320.13749 * 9 7 2 30 30 H 0.97003 * 120.00492 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.84655 * 350.06424 * 10 9 7 32 32 H 1.08994 * 109.84315 * 229.14679 * 10 9 7 33 33 H 1.08997 * 108.52063 * 179.61788 * 11 10 9 34 34 H 1.09007 * 108.52073 * 297.28390 * 11 10 9 35 35 H 1.08994 * 110.25047 * 29.56580 * 12 11 10 36 36 H 1.09005 * 110.24903 * 151.47743 * 12 11 10 37 37 H 0.97006 * 120.00017 * 334.99513 * 15 13 12 38 38 H 1.08006 * 119.33975 * 0.02961 * 19 18 16 39 39 H 1.08002 * 119.54151 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.25470 * 359.95904 * 23 22 21 41 41 H 1.08005 * 119.44319 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.52508 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.28335 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.35460 * 81.34378 * 28 13 12 45 45 H 1.09002 * 109.35766 * 201.06387 * 28 13 12 46 46 H 1.09003 * 108.11554 * 149.82939 * 29 9 7 47 47 H 1.08994 * 107.96903 * 33.18011 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3799 2.1144 -1.3935 5 1 1.5113 2.6158 0.8145 6 1 3.6015 1.4092 0.5791 7 6 2.0103 -1.2021 -0.0005 8 1 1.5383 -2.0984 0.3743 9 7 3.2934 -1.2517 -0.4764 10 6 4.3319 -2.0873 0.2153 11 6 4.6353 -3.2236 -0.6537 12 6 5.1396 -2.8358 -2.0399 13 6 3.9093 -2.7074 -2.8907 14 1 3.1020 -3.2876 -2.4436 15 7 4.1928 -3.2287 -4.2301 16 6 3.1878 -3.6901 -5.0003 17 8 2.0456 -3.6743 -4.5834 18 6 3.4731 -4.2142 -6.3486 19 6 4.7688 -4.2434 -6.8496 20 7 5.0279 -4.7122 -8.0582 21 6 4.1091 -5.1786 -8.8704 22 6 2.7581 -5.2077 -8.4903 23 6 1.7540 -5.7015 -9.3384 24 6 0.4596 -5.7048 -8.9140 25 6 0.1146 -5.2257 -7.6523 26 6 1.0647 -4.7378 -6.8033 27 6 2.4026 -4.7246 -7.2047 28 6 3.4698 -1.2269 -3.0026 29 6 3.6660 -0.5081 -1.6446 30 1 -0.4851 0.8400 0.0004 31 1 3.9443 -2.4442 1.1695 32 1 5.2328 -1.4963 0.3798 33 1 5.3939 -3.8377 -0.1685 34 1 3.7310 -3.8209 -0.7711 35 1 5.6691 -1.8841 -1.9962 36 1 5.7942 -3.6132 -2.4343 37 1 5.1040 -3.2416 -4.5626 38 1 5.5806 -3.8757 -6.2394 39 1 4.3963 -5.5453 -9.8448 40 1 2.0059 -6.0757 -10.3197 41 1 -0.3123 -6.0844 -9.5671 42 1 -0.9196 -5.2407 -7.3418 43 1 0.7852 -4.3686 -5.8275 44 1 4.0689 -0.7289 -3.7650 45 1 2.4177 -1.1826 -3.2839 46 1 4.7178 -0.2370 -1.5526 47 1 3.0806 0.4112 -1.6590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052955137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:28 Heat of formation + Delta-G solvation = 31.986558 kcal Electronic energy + Delta-G solvation = -29325.294909 eV Core-core repulsion = 25472.914178 eV Total energy + Delta-G solvation = -3852.380730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98482 -40.77871 -39.36837 -38.37255 -36.40002 -34.67662 -33.87575 -33.13522 -32.39246 -32.18568 -30.51155 -28.11111 -26.35871 -25.64789 -24.89363 -24.51694 -23.62914 -22.17278 -21.41201 -21.19872 -19.09095 -18.61266 -18.52403 -18.38077 -17.64420 -17.01267 -16.72300 -16.34503 -16.16529 -15.91947 -15.68507 -15.57035 -14.96098 -14.88430 -14.86439 -14.71598 -14.45047 -14.14337 -13.79213 -13.74979 -13.56837 -13.33259 -13.19821 -12.93933 -12.70059 -12.54088 -12.35800 -12.23631 -12.03576 -11.81044 -11.62780 -11.50107 -11.29875 -11.13034 -11.06177 -10.60254 -10.41461 -10.15443 -10.09153 -9.16337 -8.68184 -8.22052 -5.61773 -0.99153 -0.16160 0.63395 1.29663 1.37878 1.51007 1.73274 2.04332 2.17944 2.41589 2.99890 3.03579 3.21914 3.34748 3.48622 3.62122 3.67829 3.83011 3.85102 3.92159 4.01866 4.15207 4.24650 4.28694 4.34866 4.39670 4.47685 4.53747 4.59941 4.68414 4.74792 4.79698 4.87127 4.95941 4.99992 5.05753 5.09879 5.16119 5.24025 5.35541 5.36464 5.37813 5.47192 5.52732 5.58587 5.61157 5.87320 5.94560 6.16326 6.48833 6.79566 7.01841 7.19747 7.63993 8.08071 8.98123 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002991 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.610484 B = 9358.778800 C =10323.895926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.023 4.023 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.307 1.307 6 H -0.248 1.248 7 C -0.257 4.257 8 H 0.027 0.973 9 N -0.613 5.613 10 C 0.133 3.867 11 C -0.128 4.128 12 C -0.108 4.108 13 C 0.167 3.833 14 H 0.046 0.954 15 N -0.704 5.704 16 C 0.555 3.445 17 O -0.576 6.576 18 C -0.204 4.204 19 C 0.136 3.864 20 N -0.516 5.516 21 C 0.194 3.806 22 C -0.138 4.138 23 C -0.070 4.070 24 C -0.125 4.125 25 C -0.091 4.091 26 C -0.156 4.156 27 C -0.011 4.011 28 C -0.142 4.142 29 C 0.146 3.854 30 H 0.262 0.738 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.414 0.586 38 H 0.183 0.817 39 H 0.213 0.787 40 H 0.183 0.817 41 H 0.163 0.837 42 H 0.138 0.862 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.012 0.988 46 H 0.072 0.928 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.314 -12.423 -21.664 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.219 4.219 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.236 1.236 6 H -0.171 1.171 7 C -0.387 4.387 8 H 0.045 0.955 9 N -0.337 5.337 10 C 0.011 3.989 11 C -0.167 4.167 12 C -0.146 4.146 13 C 0.063 3.937 14 H 0.064 0.936 15 N -0.356 5.356 16 C 0.343 3.657 17 O -0.457 6.457 18 C -0.209 4.209 19 C -0.008 4.008 20 N -0.224 5.224 21 C 0.023 3.977 22 C -0.140 4.140 23 C -0.090 4.090 24 C -0.143 4.143 25 C -0.111 4.111 26 C -0.174 4.174 27 C -0.016 4.016 28 C -0.184 4.184 29 C 0.019 3.981 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.253 0.747 38 H 0.200 0.800 39 H 0.229 0.771 40 H 0.200 0.800 41 H 0.181 0.819 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.031 0.969 46 H 0.090 0.910 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 14.322 -12.256 -21.410 28.525 hybrid contribution -1.616 1.062 0.852 2.113 sum 12.706 -11.194 -20.558 26.634 Atomic orbital electron populations 1.70063 1.08088 1.27444 1.53864 1.26220 0.95598 1.01716 0.98349 0.85722 0.79856 0.79612 0.77009 1.20840 1.23601 1.17136 1.18547 0.89249 0.92573 1.38343 0.95516 1.44341 1.07033 1.56627 1.25661 1.20667 0.91198 0.92116 0.94926 1.20759 1.00415 0.98977 0.96509 1.21311 0.95252 1.03970 0.94070 1.20906 0.98429 0.93191 0.81144 0.93572 1.46124 1.10285 1.62538 1.16693 1.18371 0.84980 0.77325 0.85038 1.90709 1.22758 1.57788 1.74436 1.21850 0.96067 1.07856 0.95108 1.23075 0.93696 0.92093 0.91983 1.67261 1.38099 1.12403 1.04591 1.24051 0.86366 0.88144 0.99151 1.19340 0.97361 1.03339 0.94001 1.21504 0.91353 0.95994 1.00107 1.21384 0.98071 0.99184 0.95615 1.21489 1.00145 0.95102 0.94335 1.21659 0.92779 1.00952 1.01966 1.19207 0.93246 0.95581 0.93547 1.23116 0.99188 0.96574 0.99474 1.20737 0.98511 0.92850 0.86009 0.92962 0.92620 0.91707 0.89299 0.95085 0.89009 0.87992 0.74718 0.80025 0.77066 0.80018 0.81909 0.84413 0.85585 0.89946 0.96927 0.91009 0.96726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.91 13.97 21.65 0.30 -62.61 16 2 C -0.02 -1.38 5.28 84.86 0.45 -0.93 16 3 Si 0.95 47.91 25.27 68.60 1.73 49.64 16 4 H -0.28 -13.77 6.74 99.48 0.67 -13.10 16 5 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 6 H -0.25 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.26 -15.28 9.92 84.03 0.83 -14.44 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 9 N -0.61 -28.91 2.14 -707.91 -1.51 -30.42 16 10 C 0.13 4.82 6.11 83.58 0.51 5.34 16 11 C -0.13 -3.83 5.20 28.35 0.15 -3.68 16 12 C -0.11 -2.72 5.34 29.51 0.16 -2.56 16 13 C 0.17 5.69 2.22 44.70 0.10 5.79 16 14 H 0.05 2.07 6.26 -2.39 -0.01 2.06 16 15 N -0.70 -19.47 4.93 -447.21 -2.21 -21.67 16 16 C 0.55 18.92 7.72 86.67 0.67 19.58 16 17 O -0.58 -25.90 13.40 -4.04 -0.05 -25.95 16 18 C -0.20 -5.65 6.07 -18.59 -0.11 -5.76 16 19 C 0.14 2.79 10.71 84.81 0.91 3.69 16 20 N -0.52 -9.74 10.22 -193.73 -1.98 -11.72 16 21 C 0.19 2.84 11.00 85.31 0.94 3.78 16 22 C -0.14 -2.61 5.74 -21.33 -0.12 -2.74 16 23 C -0.07 -0.88 9.82 22.33 0.22 -0.66 16 24 C -0.12 -1.82 9.94 22.05 0.22 -1.60 16 25 C -0.09 -2.03 9.96 22.10 0.22 -1.81 16 26 C -0.16 -4.74 9.32 22.20 0.21 -4.54 16 27 C -0.01 -0.30 5.91 -19.94 -0.12 -0.41 16 28 C -0.14 -5.60 5.98 31.87 0.19 -5.41 16 29 C 0.15 6.22 4.22 87.60 0.37 6.59 16 30 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 31 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 32 H 0.06 1.97 8.13 -2.39 -0.02 1.96 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.03 1.15 6.92 -2.38 -0.02 1.13 16 35 H 0.09 2.07 6.29 -2.39 -0.02 2.05 16 36 H 0.10 1.82 7.86 -2.38 -0.02 1.81 16 37 H 0.41 7.47 6.58 -92.70 -0.61 6.86 16 38 H 0.18 2.50 6.44 -2.91 -0.02 2.48 16 39 H 0.21 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.13 4.86 5.24 -2.91 -0.02 4.84 16 44 H 0.08 2.68 8.13 -2.39 -0.02 2.66 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.07 2.47 6.89 -2.39 -0.02 2.45 16 47 H 0.01 0.71 3.39 -2.39 -0.01 0.70 16 Total: -1.00 -87.48 366.32 2.43 -85.05 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.37 Total: 17.48 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.78 Total: 0.21 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -5.40 Total: -126.42 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.73 Total: 49.64 kcal Total: -87.48 2.43 -85.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052955137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.033 kcal (2) G-P(sol) polarization free energy of solvation -87.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds