Wall clock time and date at job start Tue Mar 31 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00133 * 2 1 4 4 C 1.50693 * 109.47215 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00371 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.47430 * 125.64868 * 359.95302 * 6 4 3 8 8 C 1.54908 * 104.83164 * 204.16622 * 7 6 4 9 9 C 1.55149 * 101.58380 * 322.99339 * 8 7 6 10 10 H 1.09008 * 110.87247 * 277.06634 * 9 8 7 11 11 N 1.46498 * 110.72376 * 153.86699 * 9 8 7 12 12 C 1.33932 * 125.46169 * 305.02620 * 11 9 8 13 13 O 1.21510 * 123.05226 * 359.97438 * 12 11 9 14 14 O 1.33704 * 113.90055 * 179.97438 * 12 11 9 15 15 C 1.45599 * 109.66798 * 359.97438 * 14 12 11 16 16 H 1.08996 * 112.57983 * 122.26230 * 15 14 12 17 17 C 1.54314 * 109.22363 * 248.70537 * 15 14 12 18 18 N 1.48104 * 104.72523 * 134.60831 * 17 15 14 19 19 C 1.36934 * 127.84830 * 140.47718 * 18 17 15 20 20 H 1.08009 * 120.00009 * 344.01604 * 19 18 17 21 21 C 1.38807 * 120.00393 * 164.01786 * 19 18 17 22 22 N 1.31626 * 120.00065 * 350.56646 * 21 19 18 23 23 Si 1.86797 * 120.00525 * 170.57098 * 21 19 18 24 24 H 1.48500 * 109.47377 * 89.99751 * 23 21 19 25 25 H 1.48501 * 109.47459 * 210.00182 * 23 21 19 26 26 H 1.48503 * 109.46894 * 329.99942 * 23 21 19 27 27 C 1.48110 * 104.30745 * 320.21317 * 18 17 15 28 28 C 1.46987 * 125.46736 * 125.01910 * 11 9 8 29 29 H 1.08995 * 113.15785 * 57.58092 * 28 11 9 30 30 C 1.47025 * 125.64987 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.46967 * 60.00467 * 1 2 3 32 32 H 1.08999 * 109.46981 * 179.97438 * 1 2 3 33 33 H 1.08988 * 109.46962 * 299.99814 * 1 2 3 34 34 H 1.09004 * 109.47010 * 59.99454 * 3 2 1 35 35 H 1.09004 * 109.47178 * 300.00001 * 3 2 1 36 36 H 1.09000 * 110.36327 * 323.00812 * 7 6 4 37 37 H 1.09001 * 110.36422 * 85.33011 * 7 6 4 38 38 H 1.08999 * 111.00032 * 204.91384 * 8 7 6 39 39 H 1.09007 * 111.00379 * 81.06654 * 8 7 6 40 40 H 1.08991 * 110.39143 * 15.78910 * 17 15 14 41 41 H 1.09008 * 110.38741 * 253.41655 * 17 15 14 42 42 H 0.97002 * 120.00142 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.38825 * 158.62314 * 27 18 17 44 44 H 1.08998 * 110.38942 * 280.88936 * 27 18 17 45 45 H 1.08999 * 109.88553 * 59.48025 * 30 6 4 46 46 H 1.09002 * 109.87426 * 298.31682 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 3.7765 3.6837 -0.0001 8 6 4.9275 4.5202 -0.6127 9 6 6.1757 3.8076 -0.0283 10 1 6.3913 4.1654 0.9786 11 7 7.3363 3.9949 -0.9023 12 6 7.3853 3.6886 -2.2052 13 8 6.4456 3.2107 -2.8095 14 8 8.5621 3.9562 -2.7808 15 6 9.4731 4.5196 -1.7945 16 1 10.3900 3.9392 -1.6921 17 6 9.7316 6.0033 -2.1307 18 7 9.6080 6.7100 -0.8351 19 6 10.3731 7.7441 -0.3658 20 1 11.3225 7.9675 -0.8299 21 6 9.9288 8.5053 0.7065 22 7 8.6994 8.3585 1.1532 23 14 11.0753 9.7383 1.5156 24 1 10.9390 11.0558 0.8442 25 1 10.7214 9.8753 2.9513 26 1 12.4773 9.2638 1.3946 27 6 8.4648 6.0485 -0.1649 28 6 8.6337 4.5494 -0.4902 29 1 9.0983 3.9934 0.3240 30 6 5.7464 2.3255 -0.0013 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6886 1.8464 0.8900 35 1 1.6887 1.8464 -0.8900 36 1 2.8803 3.7639 -0.6153 37 1 3.5693 4.0122 1.0183 38 1 4.8774 5.5567 -0.2793 39 1 4.9175 4.4605 -1.7011 40 1 8.9847 6.3687 -2.8354 41 1 10.7343 6.1310 -2.5388 42 1 8.3887 8.8908 1.9024 43 1 8.5102 6.2107 0.9120 44 1 7.5222 6.4220 -0.5650 45 1 6.1266 1.8131 -0.8850 46 1 6.1271 1.8458 0.9004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070897541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:29 Heat of formation + Delta-G solvation = -91.547533 kcal Electronic energy + Delta-G solvation = -30738.404899 eV Core-core repulsion = 26437.525314 eV Total energy + Delta-G solvation = -4300.879585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63169 -40.12228 -38.30249 -37.46241 -37.06420 -35.74044 -34.53925 -32.20411 -31.19306 -29.66507 -28.80396 -28.13442 -27.34646 -26.12424 -24.82601 -23.75114 -22.50377 -21.27935 -20.90081 -19.90006 -19.60146 -17.73107 -17.35645 -17.11211 -16.80039 -16.52979 -16.11735 -15.85623 -15.62796 -15.50762 -15.03811 -14.78323 -14.35110 -14.15160 -13.89387 -13.65604 -13.51919 -13.38518 -13.03673 -12.84458 -12.60789 -12.48883 -12.21126 -12.15003 -11.84756 -11.74231 -11.37417 -11.27222 -11.18169 -11.03867 -10.95464 -10.58766 -10.37517 -10.17158 -10.11317 -10.03721 -9.97036 -9.89954 -8.92465 -8.78388 -8.66062 -7.17935 -6.03630 -3.40934 2.34932 2.49187 2.80735 3.02526 3.25228 3.31892 3.32779 3.66006 3.73553 4.24942 4.28373 4.36519 4.49616 4.64651 4.77313 4.79821 4.84090 4.99991 5.01999 5.05748 5.06241 5.09209 5.24909 5.26020 5.33020 5.34418 5.39793 5.56649 5.60967 5.75854 5.82759 5.87332 5.97820 6.05044 6.20974 6.32947 6.48594 6.61280 6.68785 6.97267 7.14674 7.32296 7.45297 7.68598 7.91756 8.04607 8.32639 8.84412 9.47197 10.18200 11.10125 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002727 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.567488 B =10265.442068 C =11231.186489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.050 3.950 4 C 0.530 3.470 5 O -0.520 6.520 6 N -0.612 5.612 7 C 0.100 3.900 8 C -0.149 4.149 9 C 0.173 3.827 10 H 0.117 0.883 11 N -0.613 5.613 12 C 0.645 3.355 13 O -0.534 6.534 14 O -0.328 6.328 15 C 0.056 3.944 16 H 0.124 0.876 17 C 0.117 3.883 18 N -0.588 5.588 19 C -0.234 4.234 20 H 0.082 0.918 21 C 0.000 4.000 22 N -0.914 5.914 23 Si 0.916 3.084 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.152 3.848 28 C 0.070 3.930 29 H 0.107 0.893 30 C 0.099 3.901 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.257 0.743 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 -8.461 1.020 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.030 4.030 4 C 0.318 3.682 5 O -0.395 6.395 6 N -0.349 5.349 7 C -0.023 4.023 8 C -0.188 4.188 9 C 0.070 3.930 10 H 0.135 0.865 11 N -0.359 5.359 12 C 0.400 3.600 13 O -0.420 6.420 14 O -0.238 6.238 15 C -0.001 4.001 16 H 0.141 0.859 17 C -0.010 4.010 18 N -0.313 5.313 19 C -0.361 4.361 20 H 0.099 0.901 21 C -0.198 4.198 22 N -0.559 5.559 23 Si 0.746 3.254 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.204 1.204 27 C 0.025 3.975 28 C -0.035 4.035 29 H 0.125 0.875 30 C -0.024 4.024 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.116 0.884 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.368 -9.380 0.653 14.753 hybrid contribution 0.321 1.081 0.523 1.243 sum -11.047 -8.300 1.176 13.867 Atomic orbital electron populations 1.22840 0.80327 1.03321 1.00159 1.88013 1.19809 1.25289 1.95428 1.22188 0.91346 0.86857 1.02645 1.19836 0.88285 0.83186 0.76933 1.90737 1.74474 1.25837 1.48476 1.48220 1.06903 1.05948 1.73810 1.22406 0.98009 0.80603 1.01254 1.23267 0.92478 0.99716 1.03307 1.21707 0.83721 0.93666 0.93945 0.86469 1.47934 1.13892 1.65114 1.08966 1.18527 0.82812 0.77323 0.81320 1.90986 1.34747 1.48968 1.67315 1.87178 1.23126 1.76308 1.37178 1.25170 0.92111 0.97928 0.84903 0.85877 1.21945 1.00595 0.87647 0.90774 1.44893 1.35885 1.37794 1.12713 1.18995 0.98586 1.05438 1.13079 0.90059 1.24929 0.96225 0.98539 1.00125 1.69863 1.14893 1.43006 1.28137 0.86070 0.79881 0.80888 0.78593 1.21290 1.21428 1.20370 1.21940 0.90906 0.83596 1.01025 1.23909 0.82040 1.00246 0.97314 0.87521 1.22285 0.79853 0.97062 1.03211 0.93751 0.89076 0.93775 0.90146 0.90129 0.90235 0.90454 0.88519 0.88564 0.94178 0.91438 0.93302 0.88398 0.94601 0.90046 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.37 -4.46 10.24 -55.14 -0.56 -5.02 16 3 C 0.05 0.50 5.42 36.00 0.20 0.70 16 4 C 0.53 7.54 7.93 -10.99 -0.09 7.45 16 5 O -0.52 -9.79 16.83 -14.35 -0.24 -10.04 16 6 N -0.61 -7.76 3.33 -170.52 -0.57 -8.33 16 7 C 0.10 0.94 6.69 -2.53 -0.02 0.93 16 8 C -0.15 -1.78 6.56 -24.59 -0.16 -1.94 16 9 C 0.17 2.24 3.55 -66.10 -0.23 2.01 16 10 H 0.12 1.33 8.13 -51.92 -0.42 0.91 16 11 N -0.61 -9.53 2.49 -160.36 -0.40 -9.93 16 12 C 0.65 11.76 7.98 53.68 0.43 12.19 16 13 O -0.53 -10.89 15.04 -19.12 -0.29 -11.18 16 14 O -0.33 -5.91 10.64 -37.67 -0.40 -6.31 16 15 C 0.06 0.90 4.97 -24.92 -0.12 0.78 16 16 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 17 C 0.12 2.19 6.97 -2.47 -0.02 2.17 16 18 N -0.59 -13.14 3.38 -169.01 -0.57 -13.71 16 19 C -0.23 -5.78 10.35 -15.06 -0.16 -5.94 16 20 H 0.08 1.95 7.85 -52.48 -0.41 1.53 16 21 C 0.00 -0.01 5.39 -17.43 -0.09 -0.10 16 22 N -0.91 -23.87 10.88 55.49 0.60 -23.27 16 23 Si 0.92 20.02 29.56 -169.99 -5.03 14.99 16 24 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 27 C 0.15 3.07 5.49 -2.46 -0.01 3.06 16 28 C 0.07 1.12 4.50 -65.84 -0.30 0.82 16 29 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 30 C 0.10 1.37 6.36 -3.06 -0.02 1.35 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.24 8.14 -51.94 -0.42 -0.18 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 36 H 0.08 0.60 7.48 -51.93 -0.39 0.21 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.42 6.32 -51.92 -0.33 1.09 16 40 H 0.04 0.80 8.00 -51.93 -0.42 0.39 16 41 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 42 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.10 2.19 6.53 -51.93 -0.34 1.85 16 44 H 0.04 0.79 7.97 -51.93 -0.41 0.38 16 45 H 0.08 1.37 6.65 -51.93 -0.35 1.03 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -33.50 373.38 -8.14 -41.65 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.83 Total: 0.71 kcal Atomic # 6 Polarization: 24.28 SS G_CDS: 0.52 Total: 24.80 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.93 Total: -55.23 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.49 Total: -32.55 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.50 -8.14 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070897541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.900 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds