Wall clock time and date at job start Tue Mar 31 2020 23:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00161 * 2 1 4 4 H 1.48500 * 109.46944 * 239.99497 * 3 2 1 5 5 H 1.48502 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47108 * 119.99712 * 3 2 1 7 7 C 1.38814 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99907 * 180.02562 * 7 2 1 9 9 N 1.36946 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.47136 * 125.58347 * 359.97293 * 9 7 2 11 11 C 1.54601 * 107.47544 * 179.02645 * 10 9 7 12 12 C 1.53876 * 102.63063 * 339.39360 * 11 10 9 13 13 C 1.52374 * 116.40625 * 162.84496 * 12 11 10 14 14 N 1.47883 * 85.59207 * 95.70448 * 13 12 11 15 15 C 1.34775 * 134.34118 * 203.48008 * 14 13 12 16 16 O 1.21282 * 120.00163 * 179.97438 * 15 14 13 17 17 C 1.50705 * 120.00017 * 0.02562 * 15 14 13 18 18 C 1.50702 * 109.46983 * 179.97438 * 17 15 14 19 19 C 1.34235 * 126.50038 * 265.01944 * 18 17 15 20 20 N 1.36827 * 109.93062 * 180.02562 * 19 18 17 21 21 H 0.97004 * 125.06168 * 180.02562 * 20 19 18 22 22 C 1.37684 * 109.87659 * 0.02562 * 20 19 18 23 23 C 1.39117 * 133.50819 * 180.02562 * 22 20 19 24 24 C 1.37750 * 119.78184 * 179.97438 * 23 22 20 25 25 C 1.38840 * 120.66155 * 0.02562 * 24 23 22 26 26 C 1.36622 * 120.52915 * 359.97438 * 25 24 23 27 27 C 1.39633 * 119.76653 * 359.69846 * 26 25 24 28 28 C 1.47894 * 91.31663 * 23.48337 * 14 13 12 29 29 C 1.47720 * 125.58589 * 179.97438 * 9 7 2 30 30 H 0.97006 * 119.99370 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.86949 * 298.54175 * 10 9 7 32 32 H 1.08999 * 109.86672 * 59.51538 * 10 9 7 33 33 H 1.08999 * 110.76081 * 97.62810 * 11 10 9 34 34 H 1.09004 * 110.76094 * 220.99772 * 11 10 9 35 35 H 1.09002 * 113.84853 * 209.87639 * 13 12 11 36 36 H 1.08997 * 113.85359 * 341.53281 * 13 12 11 37 37 H 1.08998 * 109.46714 * 299.99700 * 17 15 14 38 38 H 1.09002 * 109.47265 * 59.99673 * 17 15 14 39 39 H 1.08003 * 125.03391 * 0.02562 * 19 18 17 40 40 H 1.07996 * 120.11086 * 359.95052 * 23 22 20 41 41 H 1.07994 * 119.67058 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.73256 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.11465 * 180.02562 * 26 25 24 44 44 H 1.08999 * 113.85142 * 222.34843 * 28 14 13 45 45 H 1.09005 * 113.96866 * 90.69279 * 28 14 13 46 46 H 1.08992 * 110.40138 * 321.22600 * 29 9 7 47 47 H 1.09001 * 110.40009 * 83.52714 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 -0.1389 -2.5313 0.0006 11 6 -0.4576 -4.0439 -0.0245 12 6 0.8475 -4.6537 -0.5655 13 6 1.0382 -6.1496 -0.3467 14 7 0.4950 -6.3030 -1.7136 15 6 -0.1203 -7.3025 -2.3760 16 8 -0.4685 -7.1432 -3.5268 17 6 -0.3769 -8.6177 -1.6864 18 6 -1.0723 -9.5567 -2.6381 19 6 -2.3959 -9.7569 -2.7377 20 7 -2.6557 -10.6820 -3.7118 21 1 -3.5397 -10.9898 -3.9665 22 6 -1.4756 -11.1109 -4.2768 23 6 -1.1711 -12.0206 -5.2843 24 6 0.1430 -12.2390 -5.6346 25 6 1.1694 -11.5601 -4.9917 26 6 0.8930 -10.6624 -3.9996 27 6 -0.4325 -10.4205 -3.6331 28 6 0.8956 -4.9233 -2.0645 29 6 1.9360 -3.7333 0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5553 -2.0798 0.9011 32 1 -0.5582 -2.0497 -0.8828 33 1 -0.6679 -4.4111 0.9800 34 1 -1.2911 -4.2521 -0.6954 35 1 2.0811 -6.4514 -0.2503 36 1 0.3985 -6.5663 0.4312 37 1 0.5712 -9.0543 -1.3725 38 1 -1.0079 -8.4530 -0.8129 39 1 -3.1448 -9.2613 -2.1378 40 1 -1.9624 -12.5541 -5.7898 41 1 0.3774 -12.9459 -6.4167 42 1 2.1946 -11.7432 -5.2782 43 1 1.6966 -10.1377 -3.5042 44 1 0.1440 -4.3776 -2.6349 45 1 1.8947 -4.8480 -2.4940 46 1 2.8182 -3.7501 -0.6392 47 1 2.1979 -4.0317 1.0157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073146501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:36 Heat of formation + Delta-G solvation = 91.104868 kcal Electronic energy + Delta-G solvation = -28451.944401 eV Core-core repulsion = 24602.127233 eV Total energy + Delta-G solvation = -3849.817168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43492 -40.39234 -38.15995 -37.01452 -35.54198 -33.18566 -32.16181 -30.56173 -29.52864 -29.33228 -28.66614 -27.26063 -25.95302 -25.32379 -23.54111 -22.98710 -21.91166 -20.32485 -20.08346 -18.89896 -18.30315 -17.90905 -16.90045 -16.59579 -16.45972 -15.71721 -15.61940 -15.38104 -14.74399 -14.53615 -14.34262 -14.16411 -14.01102 -13.78535 -13.70616 -12.93187 -12.92305 -12.75324 -12.32648 -12.25201 -12.08396 -11.86069 -11.80543 -11.75927 -11.50426 -11.05347 -10.95537 -10.91699 -10.69254 -10.38902 -10.14229 -10.12178 -9.85791 -9.81409 -9.67064 -9.36112 -8.58967 -8.42905 -8.33516 -7.78569 -6.83139 -5.70637 -3.04286 1.00136 1.51177 2.44012 2.86088 2.95806 3.12837 3.41335 3.45687 3.46890 3.80712 4.48274 4.55976 4.62500 4.67569 4.73464 4.79003 4.93968 5.00031 5.09878 5.13387 5.30258 5.36362 5.41924 5.49835 5.54273 5.56900 5.59762 5.67651 5.70043 5.74803 5.85367 5.97116 5.98325 6.07067 6.22667 6.25431 6.33371 6.47908 6.48049 6.52865 6.55714 6.63948 6.68085 6.71568 7.02505 7.36126 7.55813 7.62235 7.83055 7.94942 8.25910 8.40457 9.22154 9.82377 10.47842 11.40862 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.002065 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.896260 B =13556.204211 C =13879.129158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.119 4.119 12 C -0.104 4.104 13 C 0.114 3.886 14 N -0.644 5.644 15 C 0.531 3.469 16 O -0.537 6.537 17 C -0.059 4.059 18 C -0.150 4.150 19 C 0.064 3.936 20 N -0.595 5.595 21 H 0.415 0.585 22 C 0.095 3.905 23 C -0.132 4.132 24 C -0.102 4.102 25 C -0.149 4.149 26 C -0.067 4.067 27 C -0.089 4.089 28 C 0.131 3.869 29 C 0.150 3.850 30 H 0.253 0.747 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.169 0.831 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.041 0.959 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 -25.463 -3.936 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.157 4.157 12 C -0.106 4.106 13 C -0.009 4.009 14 N -0.380 5.380 15 C 0.320 3.680 16 O -0.414 6.414 17 C -0.099 4.099 18 C -0.158 4.158 19 C -0.063 4.063 20 N -0.198 5.198 21 H 0.252 0.748 22 C -0.012 4.012 23 C -0.153 4.153 24 C -0.122 4.122 25 C -0.168 4.168 26 C -0.085 4.085 27 C -0.093 4.093 28 C 0.010 3.990 29 C 0.024 3.976 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.187 0.813 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.474 -25.318 -4.682 25.981 hybrid contribution 0.008 0.838 -0.114 0.846 sum -3.466 -24.480 -4.796 25.185 Atomic orbital electron populations 1.69956 1.04875 1.25136 1.56979 1.24804 0.95719 0.97679 1.02259 0.86200 0.78441 0.83230 0.77879 1.21178 1.21660 1.21192 1.18998 0.90390 0.82365 1.43911 0.90464 1.44524 1.01591 0.99717 1.87288 1.21207 0.84269 0.87955 1.01158 1.22560 0.94415 0.99295 0.99421 1.22499 0.99645 0.93204 0.95227 1.23061 0.98953 0.95055 0.83836 1.50299 1.57978 1.14337 1.15392 1.20322 0.77572 0.83999 0.86102 1.90709 1.51940 1.81466 1.17249 1.19861 1.01898 0.91048 0.97108 1.19574 0.92298 1.02294 1.01627 1.21547 0.96669 0.94250 0.93791 1.41656 1.07306 1.37800 1.32995 0.74848 1.18231 0.85672 0.99321 0.97990 1.19986 0.97090 1.00040 0.98147 1.20768 0.91742 0.99876 0.99773 1.20607 0.99115 0.98903 0.98164 1.20260 0.94458 0.96988 0.96839 1.18998 0.92869 0.99025 0.98433 1.22900 1.00335 0.79309 0.96500 1.21222 0.93441 0.85869 0.97111 0.93717 0.93865 0.93575 0.91916 0.92060 0.89634 0.90088 0.88517 0.88415 0.81346 0.86471 0.85948 0.86167 0.86409 0.90083 0.89919 0.94058 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.30 55.49 0.57 -26.25 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.21 10.28 -15.05 -0.15 -6.36 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.82 3.41 -170.52 -0.58 -15.40 16 10 C 0.18 4.20 5.39 -2.85 -0.02 4.18 16 11 C -0.12 -2.09 6.35 -25.43 -0.16 -2.25 16 12 C -0.10 -1.65 0.99 -154.74 -0.15 -1.81 16 13 C 0.11 1.36 7.99 -3.60 -0.03 1.33 16 14 N -0.64 -9.25 3.62 -186.89 -0.68 -9.92 16 15 C 0.53 8.00 8.05 -10.98 -0.09 7.91 16 16 O -0.54 -10.45 16.76 5.56 0.09 -10.35 16 17 C -0.06 -0.64 5.98 -29.03 -0.17 -0.82 16 18 C -0.15 -1.82 4.81 -102.71 -0.49 -2.32 16 19 C 0.06 0.65 11.73 -16.73 -0.20 0.45 16 20 N -0.60 -5.57 6.07 -10.65 -0.06 -5.63 16 21 H 0.41 2.47 8.96 -40.82 -0.37 2.11 16 22 C 0.09 1.09 7.28 -83.99 -0.61 0.48 16 23 C -0.13 -1.30 10.08 -39.43 -0.40 -1.70 16 24 C -0.10 -0.97 10.01 -39.54 -0.40 -1.36 16 25 C -0.15 -1.53 9.97 -39.94 -0.40 -1.93 16 26 C -0.07 -0.80 10.05 -39.64 -0.40 -1.20 16 27 C -0.09 -1.14 6.35 -105.14 -0.67 -1.81 16 28 C 0.13 2.14 8.14 -3.60 -0.03 2.11 16 29 C 0.15 2.84 6.66 -3.18 -0.02 2.82 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 32 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 45 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 46 H 0.04 0.76 7.99 -51.93 -0.42 0.34 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -35.06 387.94 -11.32 -46.38 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.01 Total: 1.04 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -4.48 Total: -2.60 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.75 Total: -57.21 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.06 -11.32 -46.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073146501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.486 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds