Wall clock time and date at job start Tue Mar 31 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48497 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47283 * 299.99938 * 3 2 1 6 6 H 1.48501 * 109.47307 * 59.99849 * 3 2 1 7 7 C 1.38810 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.47147 * 125.57915 * 359.97354 * 9 7 2 11 11 C 1.54630 * 107.37663 * 179.12448 * 10 9 7 12 12 C 1.53514 * 102.70217 * 339.38411 * 11 10 9 13 13 C 1.51786 * 116.99912 * 164.16527 * 12 11 10 14 14 N 1.47394 * 87.51454 * 92.93201 * 13 12 11 15 15 C 1.34784 * 135.84811 * 205.66375 * 14 13 12 16 16 O 1.21283 * 119.99701 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99839 * 179.97438 * 15 14 13 18 18 N 1.46499 * 109.47133 * 180.02562 * 17 15 14 19 19 C 1.36828 * 125.06022 * 264.99876 * 18 17 15 20 20 C 1.34237 * 109.92951 * 179.97438 * 19 18 17 21 21 C 1.46481 * 106.99853 * 359.97438 * 20 19 18 22 22 C 1.39634 * 134.03273 * 179.97438 * 21 20 19 23 23 C 1.36626 * 119.76841 * 180.02562 * 22 21 20 24 24 C 1.38837 * 120.52178 * 0.02562 * 23 22 21 25 25 C 1.37748 * 120.66814 * 0.02562 * 24 23 22 26 26 C 1.37685 * 125.06742 * 84.99659 * 18 17 15 27 27 C 1.47379 * 88.29691 * 25.92051 * 14 13 12 28 28 C 1.47757 * 125.57809 * 180.02562 * 9 7 2 29 29 H 0.96997 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.86395 * 59.67709 * 10 9 7 31 31 H 1.08996 * 109.97758 * 298.63476 * 10 9 7 32 32 H 1.09001 * 110.76597 * 221.08481 * 11 10 9 33 33 H 1.08997 * 110.76798 * 97.68379 * 11 10 9 34 34 H 1.08993 * 113.54861 * 338.26673 * 13 12 11 35 35 H 1.09005 * 113.60739 * 207.59353 * 13 12 11 36 36 H 1.09000 * 109.47538 * 59.99778 * 17 15 14 37 37 H 1.09006 * 109.47334 * 299.99780 * 17 15 14 38 38 H 1.07999 * 125.03806 * 359.97438 * 19 18 17 39 39 H 1.08006 * 126.49922 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.11483 * 0.02885 * 22 21 20 41 41 H 1.07995 * 119.73764 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.66411 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.10415 * 180.27745 * 25 24 23 44 44 H 1.08999 * 113.54668 * 88.74222 * 27 14 13 45 45 H 1.09000 * 113.54513 * 219.42474 * 27 14 13 46 46 H 1.08998 * 110.40441 * 83.47184 * 28 9 7 47 47 H 1.08993 * 110.40632 * 321.04224 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1389 -2.5311 0.0006 11 6 -0.4550 -4.0446 -0.0220 12 6 0.8473 -4.6535 -0.5606 13 6 1.0381 -6.1477 -0.3741 14 7 0.4465 -6.3253 -1.7124 15 6 -0.2197 -7.3065 -2.3528 16 8 -0.4486 -8.3540 -1.7860 17 6 -0.6802 -7.1019 -3.7730 18 7 -1.3746 -8.3046 -4.2393 19 6 -0.7957 -9.3211 -4.9491 20 6 -1.7075 -10.2691 -5.2172 21 6 -2.9736 -9.8236 -4.6307 22 6 -4.2604 -10.3628 -4.5751 23 6 -5.2549 -9.6800 -3.9337 24 6 -4.9966 -8.4534 -3.3369 25 6 -3.7347 -7.9026 -3.3808 26 6 -2.7070 -8.5806 -4.0285 27 6 0.9061 -4.9658 -2.0478 28 6 1.9366 -3.7334 0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5578 -2.0520 -0.8843 31 1 -0.5572 -2.0788 0.8996 32 1 -1.2870 -4.2556 -0.6938 33 1 -0.6659 -4.4104 0.9829 34 1 0.4322 -6.5672 0.4290 35 1 2.0837 -6.4505 -0.3167 36 1 0.1827 -6.9099 -4.4107 37 1 -1.3600 -6.2508 -3.8156 38 1 0.2412 -9.3556 -5.2491 39 1 -1.5392 -11.1867 -5.7614 40 1 -4.4688 -11.3164 -5.0374 41 1 -6.2499 -10.0978 -3.8906 42 1 -5.7931 -7.9253 -2.8340 43 1 -3.5428 -6.9499 -2.9096 44 1 1.9150 -4.9363 -2.4593 45 1 0.1899 -4.3982 -2.6420 46 1 2.1987 -4.0309 1.0169 47 1 2.8175 -3.7513 -0.6400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073439216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:59 Heat of formation + Delta-G solvation = 107.643557 kcal Electronic energy + Delta-G solvation = -28775.426037 eV Core-core repulsion = 24926.326040 eV Total energy + Delta-G solvation = -3849.099997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53408 -40.67831 -38.46923 -36.98260 -35.75849 -33.10810 -32.29493 -30.75789 -29.68455 -29.01544 -28.82464 -27.10636 -26.11146 -25.41046 -23.71411 -22.74833 -21.65905 -20.63374 -20.35544 -19.52606 -18.44469 -17.41321 -17.20641 -16.75145 -16.61054 -15.83540 -15.69752 -15.48401 -14.91203 -14.56614 -14.39658 -14.19997 -13.88613 -13.82642 -13.71868 -13.18541 -13.04208 -12.72721 -12.54329 -12.41371 -12.25252 -12.05305 -11.92460 -11.70710 -11.64598 -11.09897 -10.99294 -10.92747 -10.77931 -10.55479 -10.32085 -10.15561 -9.99193 -9.89948 -9.73991 -9.60170 -8.71820 -8.68148 -8.23578 -7.74957 -6.92558 -5.79328 -3.13349 1.07203 1.56076 2.30638 2.44704 2.67818 2.95458 3.34351 3.40252 3.42607 3.87559 4.19592 4.40238 4.44549 4.53112 4.56635 4.67619 4.79765 4.85673 4.95214 5.06165 5.12564 5.34924 5.36691 5.40140 5.42167 5.54180 5.56237 5.56411 5.63924 5.70780 5.71973 5.76078 5.84670 5.99400 6.04799 6.13240 6.36036 6.40463 6.40706 6.54599 6.55565 6.60927 6.68547 6.70322 7.10984 7.15362 7.47599 7.51950 7.64889 7.74411 8.00135 8.16325 9.13390 9.73358 10.38284 11.32260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.002321 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.020220 B =12063.056562 C =12606.631685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.117 4.117 12 C -0.104 4.104 13 C 0.121 3.879 14 N -0.642 5.642 15 C 0.519 3.481 16 O -0.529 6.529 17 C 0.097 3.903 18 N -0.468 5.468 19 C 0.060 3.940 20 C -0.205 4.205 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.149 4.149 24 C -0.101 4.101 25 C -0.124 4.124 26 C 0.110 3.890 27 C 0.117 3.883 28 C 0.153 3.847 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.166 0.834 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.027 0.973 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.947 -17.222 -10.031 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.106 4.106 13 C -0.002 4.002 14 N -0.378 5.378 15 C 0.307 3.693 16 O -0.405 6.405 17 C -0.028 4.028 18 N -0.151 5.151 19 C -0.065 4.065 20 C -0.230 4.230 21 C -0.113 4.113 22 C -0.093 4.093 23 C -0.168 4.168 24 C -0.120 4.120 25 C -0.144 4.144 26 C 0.004 3.996 27 C -0.005 4.005 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.183 0.817 39 H 0.164 0.836 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.052 -17.458 -9.761 20.408 hybrid contribution 0.626 1.027 0.090 1.206 sum -3.425 -16.432 -9.670 19.371 Atomic orbital electron populations 1.69962 1.04888 1.25011 1.56999 1.24803 0.95720 0.97706 1.02160 0.86054 0.78715 0.83752 0.77269 1.20498 1.21762 1.21746 1.19085 0.90464 0.82269 1.43883 0.90317 1.44549 1.01564 0.99673 1.87342 1.21221 0.84284 0.87746 1.01276 1.22471 0.94050 0.99267 0.99717 1.22181 1.00143 0.93360 0.94918 1.22799 0.98388 0.94305 0.84690 1.49854 1.54650 1.16195 1.17129 1.20404 0.78577 0.82484 0.87869 1.90767 1.56556 1.25714 1.67443 1.21497 0.99703 0.87902 0.93739 1.43400 1.06940 1.17937 1.46843 1.21756 0.98686 0.88395 0.97626 1.21615 0.91479 1.01005 1.08867 1.19190 0.94389 0.94920 1.02799 1.20229 0.90924 0.99250 0.98853 1.20602 0.99101 0.96020 1.01082 1.20789 0.95640 0.95926 0.99692 1.20055 0.91735 1.00541 1.02068 1.18194 0.84082 0.96285 1.01006 1.22971 1.00151 0.79494 0.97926 1.21140 0.93138 0.85721 0.97336 0.93748 0.93499 0.93753 0.92182 0.91748 0.90415 0.89656 0.86279 0.86672 0.81680 0.83610 0.86251 0.86209 0.85839 0.86582 0.89212 0.89975 0.95520 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.89 10.30 55.49 0.57 -25.32 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -5.98 10.28 -15.06 -0.15 -6.14 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.14 3.41 -170.53 -0.58 -14.72 16 10 C 0.18 4.02 5.39 -2.83 -0.02 4.00 16 11 C -0.12 -1.99 6.41 -25.61 -0.16 -2.15 16 12 C -0.10 -1.56 1.06 -155.21 -0.16 -1.72 16 13 C 0.12 1.60 8.02 -7.47 -0.06 1.54 16 14 N -0.64 -8.45 3.70 -185.73 -0.69 -9.14 16 15 C 0.52 7.28 8.15 -10.99 -0.09 7.19 16 16 O -0.53 -9.66 17.19 5.55 0.10 -9.56 16 17 C 0.10 1.04 6.30 -5.20 -0.03 1.00 16 18 N -0.47 -5.81 2.27 -115.71 -0.26 -6.07 16 19 C 0.06 0.65 11.27 -16.73 -0.19 0.46 16 20 C -0.20 -2.31 11.08 -37.67 -0.42 -2.73 16 21 C -0.11 -1.42 6.37 -105.14 -0.67 -2.09 16 22 C -0.07 -0.84 10.05 -39.64 -0.40 -1.24 16 23 C -0.15 -1.59 9.97 -39.94 -0.40 -1.99 16 24 C -0.10 -1.15 10.01 -39.54 -0.40 -1.55 16 25 C -0.12 -1.60 10.00 -39.43 -0.39 -1.99 16 26 C 0.11 1.51 6.80 -83.99 -0.57 0.94 16 27 C 0.12 1.47 7.78 -7.34 -0.06 1.41 16 28 C 0.15 2.76 6.70 -3.21 -0.02 2.74 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.05 1.16 7.39 -51.93 -0.38 0.78 16 31 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 32 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.12 0.90 8.12 -51.93 -0.42 0.48 16 37 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 44 H 0.09 1.00 8.06 -51.93 -0.42 0.58 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -33.45 389.34 -11.38 -44.82 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.07 Total: 0.54 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -4.29 Total: -2.60 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.96 Total: -55.25 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.10 Total: -9.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.45 -11.38 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073439216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.466 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds