Wall clock time and date at job start Tue Mar 31 2020 23:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48497 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47283 * 299.99938 * 3 2 1 6 6 H 1.48501 * 109.47307 * 59.99849 * 3 2 1 7 7 C 1.38810 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00371 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.47147 * 125.57915 * 359.97354 * 9 7 2 11 11 C 1.54630 * 107.37663 * 179.12448 * 10 9 7 12 12 C 1.53514 * 102.70217 * 339.38411 * 11 10 9 13 13 C 1.51786 * 116.99912 * 164.16527 * 12 11 10 14 14 N 1.47394 * 87.51454 * 92.93201 * 13 12 11 15 15 C 1.34784 * 135.84811 * 205.66375 * 14 13 12 16 16 O 1.21283 * 119.99701 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99839 * 179.97438 * 15 14 13 18 18 N 1.46499 * 109.47133 * 180.02562 * 17 15 14 19 19 C 1.36828 * 125.06022 * 264.99876 * 18 17 15 20 20 C 1.34237 * 109.92951 * 179.97438 * 19 18 17 21 21 C 1.46481 * 106.99853 * 359.97438 * 20 19 18 22 22 C 1.39634 * 134.03273 * 179.97438 * 21 20 19 23 23 C 1.36626 * 119.76841 * 180.02562 * 22 21 20 24 24 C 1.38837 * 120.52178 * 0.02562 * 23 22 21 25 25 C 1.37748 * 120.66814 * 0.02562 * 24 23 22 26 26 C 1.37685 * 125.06742 * 84.99659 * 18 17 15 27 27 C 1.47379 * 88.29691 * 25.92051 * 14 13 12 28 28 C 1.47757 * 125.57809 * 180.02562 * 9 7 2 29 29 H 0.96997 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.86395 * 59.67709 * 10 9 7 31 31 H 1.08996 * 109.97758 * 298.63476 * 10 9 7 32 32 H 1.09001 * 110.76597 * 221.08481 * 11 10 9 33 33 H 1.08997 * 110.76798 * 97.68379 * 11 10 9 34 34 H 1.08993 * 113.54861 * 338.26673 * 13 12 11 35 35 H 1.09005 * 113.60739 * 207.59353 * 13 12 11 36 36 H 1.09000 * 109.47538 * 59.99778 * 17 15 14 37 37 H 1.09006 * 109.47334 * 299.99780 * 17 15 14 38 38 H 1.07999 * 125.03806 * 359.97438 * 19 18 17 39 39 H 1.08006 * 126.49922 * 180.02562 * 20 19 18 40 40 H 1.08003 * 120.11483 * 0.02885 * 22 21 20 41 41 H 1.07995 * 119.73764 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.66411 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.10415 * 180.27745 * 25 24 23 44 44 H 1.08999 * 113.54668 * 88.74222 * 27 14 13 45 45 H 1.09000 * 113.54513 * 219.42474 * 27 14 13 46 46 H 1.08998 * 110.40441 * 83.47184 * 28 9 7 47 47 H 1.08993 * 110.40632 * 321.04224 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1389 -2.5311 0.0006 11 6 -0.4550 -4.0446 -0.0220 12 6 0.8473 -4.6535 -0.5606 13 6 1.0381 -6.1477 -0.3741 14 7 0.4465 -6.3253 -1.7124 15 6 -0.2197 -7.3065 -2.3528 16 8 -0.4486 -8.3540 -1.7860 17 6 -0.6802 -7.1019 -3.7730 18 7 -1.3746 -8.3046 -4.2393 19 6 -0.7957 -9.3211 -4.9491 20 6 -1.7075 -10.2691 -5.2172 21 6 -2.9736 -9.8236 -4.6307 22 6 -4.2604 -10.3628 -4.5751 23 6 -5.2549 -9.6800 -3.9337 24 6 -4.9966 -8.4534 -3.3369 25 6 -3.7347 -7.9026 -3.3808 26 6 -2.7070 -8.5806 -4.0285 27 6 0.9061 -4.9658 -2.0478 28 6 1.9366 -3.7334 0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5578 -2.0520 -0.8843 31 1 -0.5572 -2.0788 0.8996 32 1 -1.2870 -4.2556 -0.6938 33 1 -0.6659 -4.4104 0.9829 34 1 0.4322 -6.5672 0.4290 35 1 2.0837 -6.4505 -0.3167 36 1 0.1827 -6.9099 -4.4107 37 1 -1.3600 -6.2508 -3.8156 38 1 0.2412 -9.3556 -5.2491 39 1 -1.5392 -11.1867 -5.7614 40 1 -4.4688 -11.3164 -5.0374 41 1 -6.2499 -10.0978 -3.8906 42 1 -5.7931 -7.9253 -2.8340 43 1 -3.5428 -6.9499 -2.9096 44 1 1.9150 -4.9363 -2.4593 45 1 0.1899 -4.3982 -2.6420 46 1 2.1987 -4.0309 1.0169 47 1 2.8175 -3.7513 -0.6400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073439216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:58 Heat of formation + Delta-G solvation = 89.639846 kcal Electronic energy + Delta-G solvation = -28776.206736 eV Core-core repulsion = 24926.326040 eV Total energy + Delta-G solvation = -3849.880696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.41499 -41.80305 -39.65254 -37.86175 -37.30160 -34.17886 -33.87797 -31.78288 -31.10382 -30.33997 -29.76521 -28.24955 -27.22765 -26.79816 -25.28201 -23.59762 -22.51679 -22.15131 -21.48221 -20.59878 -19.71160 -18.60313 -18.31572 -18.17158 -17.44568 -16.99474 -16.76054 -16.63987 -16.29795 -16.01160 -15.62127 -15.36943 -15.12829 -14.79649 -14.66576 -14.23756 -14.08801 -13.95306 -13.73904 -13.67961 -13.52485 -13.30734 -13.12341 -12.86504 -12.80629 -12.52861 -12.49239 -12.27833 -11.97610 -11.94304 -11.83230 -11.76184 -11.69810 -11.25000 -11.05916 -10.68055 -10.55623 -9.81362 -9.10419 -8.85269 -8.59111 -7.81515 -5.16032 0.21688 0.68116 1.39324 1.42181 1.49184 1.50199 1.59707 1.86855 2.01756 2.52247 2.99496 3.18064 3.33128 3.44357 3.56348 3.70154 3.74277 3.81583 3.95974 4.03368 4.06542 4.14199 4.20558 4.27461 4.37166 4.54182 4.54710 4.57575 4.58678 4.69146 4.69916 4.77464 4.84801 4.90525 4.94259 5.02519 5.05772 5.16181 5.16768 5.19644 5.51531 5.56315 5.67402 5.69616 5.80700 5.85211 5.88196 6.22652 6.29304 6.32625 6.59808 6.94845 7.13946 7.81418 8.45209 9.29040 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.002321 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.020220 B =12063.056562 C =12606.631685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.232 4.232 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.190 3.810 11 C -0.103 4.103 12 C -0.100 4.100 13 C 0.125 3.875 14 N -0.639 5.639 15 C 0.520 3.480 16 O -0.576 6.576 17 C 0.100 3.900 18 N -0.476 5.476 19 C 0.054 3.946 20 C -0.218 4.218 21 C -0.135 4.135 22 C -0.083 4.083 23 C -0.153 4.153 24 C -0.108 4.108 25 C -0.147 4.147 26 C 0.081 3.919 27 C 0.126 3.874 28 C 0.151 3.849 29 H 0.244 0.756 30 H 0.015 0.985 31 H 0.001 0.999 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.198 0.802 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.086 0.914 46 H 0.031 0.969 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 -18.628 -11.419 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.226 1.226 7 C -0.361 4.361 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.065 3.935 11 C -0.141 4.141 12 C -0.102 4.102 13 C 0.003 3.997 14 N -0.373 5.373 15 C 0.309 3.691 16 O -0.456 6.456 17 C -0.025 4.025 18 N -0.159 5.159 19 C -0.069 4.069 20 C -0.242 4.242 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.172 4.172 24 C -0.127 4.127 25 C -0.168 4.168 26 C -0.025 4.025 27 C 0.004 3.996 28 C 0.026 3.974 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.019 0.981 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.174 0.826 37 H 0.143 0.857 38 H 0.215 0.785 39 H 0.185 0.815 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.105 0.895 46 H 0.048 0.952 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.614 -18.881 -11.157 22.086 hybrid contribution 0.188 1.426 0.580 1.551 sum -2.425 -17.456 -10.577 20.554 Atomic orbital electron populations 1.70181 1.06272 1.24980 1.58787 1.25590 0.96501 1.00888 1.03086 0.85074 0.78400 0.79862 0.76392 1.18749 1.22154 1.22613 1.19493 0.91109 0.83468 1.42031 0.89483 1.44832 1.02142 1.01124 1.87045 1.20902 0.84011 0.90871 0.97709 1.22252 0.95789 0.95438 1.00596 1.21999 0.97333 0.93902 0.96972 1.22801 0.99751 0.92349 0.84814 1.49818 1.54266 1.16255 1.17002 1.20962 0.77606 0.81653 0.88845 1.90748 1.58364 1.27681 1.68805 1.21671 1.01078 0.87722 0.92037 1.43595 1.06657 1.18706 1.46946 1.22360 1.00046 0.87747 0.96779 1.21983 0.90955 1.02084 1.09224 1.19668 0.95728 0.95221 1.03382 1.20593 0.90604 1.00157 0.98796 1.20958 1.00264 0.95673 1.00314 1.21125 0.95662 0.96408 0.99544 1.20248 0.92575 1.00949 1.03003 1.18525 0.85038 0.97060 1.01832 1.23027 1.01747 0.78757 0.96066 1.21308 0.94391 0.83587 0.98102 0.94635 0.96655 0.98056 0.91052 0.91393 0.91132 0.87215 0.82646 0.85673 0.78510 0.81506 0.84120 0.83589 0.84017 0.86790 0.86615 0.89534 0.95154 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.41 10.30 21.65 0.22 -55.19 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 3 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.23 -12.08 10.28 84.03 0.86 -11.21 16 8 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -29.14 3.41 -693.45 -2.36 -31.51 16 10 C 0.19 8.76 5.39 86.81 0.47 9.23 16 11 C -0.10 -3.44 6.41 31.32 0.20 -3.24 16 12 C -0.10 -2.79 1.06 -52.62 -0.06 -2.85 16 13 C 0.13 3.00 8.02 83.67 0.67 3.67 16 14 N -0.64 -15.10 3.70 -859.92 -3.18 -18.28 16 15 C 0.52 13.60 8.15 87.65 0.71 14.32 16 16 O -0.58 -20.59 17.19 -3.04 -0.05 -20.64 16 17 C 0.10 1.90 6.30 85.63 0.54 2.44 16 18 N -0.48 -11.15 2.27 -520.01 -1.18 -12.33 16 19 C 0.05 1.08 11.27 83.00 0.94 2.02 16 20 C -0.22 -4.63 11.08 23.51 0.26 -4.37 16 21 C -0.14 -3.46 6.37 -20.20 -0.13 -3.59 16 22 C -0.08 -1.81 10.05 22.23 0.22 -1.59 16 23 C -0.15 -3.10 9.97 22.04 0.22 -2.88 16 24 C -0.11 -2.41 10.01 22.30 0.22 -2.19 16 25 C -0.15 -3.84 10.00 22.37 0.22 -3.62 16 26 C 0.08 2.20 6.80 39.03 0.27 2.47 16 27 C 0.13 2.76 7.78 83.77 0.65 3.41 16 28 C 0.15 5.15 6.70 86.23 0.58 5.73 16 29 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.02 0.79 7.39 -2.39 -0.02 0.77 16 31 H 0.00 0.06 7.49 -2.39 -0.02 0.05 16 32 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 35 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.16 1.76 8.12 -2.39 -0.02 1.74 16 37 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 44 H 0.12 2.05 8.06 -2.39 -0.02 2.03 16 45 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 Total: -1.00 -75.50 389.34 3.75 -71.75 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.96 Total: 15.68 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 7.32 Total: 4.52 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -6.50 Total: -117.31 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -75.50 3.75 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073439216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.387 kcal (2) G-P(sol) polarization free energy of solvation -75.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds