Wall clock time and date at job start Tue Mar 31 2020 23:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99560 * 2 1 4 4 H 1.48490 * 109.47607 * 240.00191 * 3 2 1 5 5 H 1.48498 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46537 * 120.00063 * 3 2 1 7 7 C 1.38807 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.46589 * 125.30992 * 180.02562 * 9 7 2 11 11 C 1.53259 * 108.15886 * 177.89131 * 10 9 7 12 12 H 1.09006 * 113.08088 * 222.46436 * 11 10 9 13 13 C 1.54799 * 109.75102 * 95.76552 * 11 10 9 14 14 C 1.55153 * 101.40039 * 212.12758 * 13 11 10 15 15 N 1.47344 * 104.79106 * 37.51674 * 14 13 11 16 16 C 1.34770 * 125.53208 * 156.48543 * 15 14 13 17 17 O 1.21277 * 120.00459 * 179.69535 * 16 15 14 18 18 C 1.50700 * 119.99674 * 359.69760 * 16 15 14 19 19 N 1.46507 * 109.47001 * 179.97438 * 18 16 15 20 20 C 1.36829 * 125.06237 * 265.03995 * 19 18 16 21 21 C 1.34239 * 109.92651 * 179.72327 * 20 19 18 22 22 C 1.46485 * 106.99901 * 0.37286 * 21 20 19 23 23 C 1.39635 * 134.03224 * 179.97438 * 22 21 20 24 24 C 1.36620 * 119.76653 * 179.67826 * 23 22 21 25 25 C 1.38830 * 120.52587 * 0.02562 * 24 23 22 26 26 C 1.37753 * 120.67033 * 359.97438 * 25 24 23 27 27 C 1.37686 * 125.06056 * 85.00181 * 19 18 16 28 28 C 1.47218 * 108.93888 * 336.22727 * 15 14 13 29 29 H 1.09003 * 112.28045 * 236.47174 * 28 15 14 30 30 C 1.46605 * 125.30442 * 0.02562 * 9 7 2 31 31 H 0.96990 * 120.00263 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.73275 * 58.19878 * 10 9 7 33 33 H 1.08999 * 109.71448 * 297.56730 * 10 9 7 34 34 H 1.09001 * 111.01398 * 330.34079 * 13 11 10 35 35 H 1.08996 * 111.02174 * 94.19133 * 13 11 10 36 36 H 1.09004 * 110.48261 * 278.65513 * 14 13 11 37 37 H 1.08996 * 110.32522 * 156.30164 * 14 13 11 38 38 H 1.08995 * 109.47696 * 59.99709 * 18 16 15 39 39 H 1.09004 * 109.47563 * 299.99404 * 18 16 15 40 40 H 1.07993 * 125.03910 * 359.96392 * 20 19 18 41 41 H 1.08004 * 126.50326 * 180.31485 * 21 20 19 42 42 H 1.08000 * 120.11630 * 359.65260 * 23 22 21 43 43 H 1.08001 * 119.74041 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.66307 * 179.97438 * 25 24 23 45 45 H 1.07993 * 120.10903 * 180.02562 * 26 25 24 46 46 H 1.09006 * 109.91692 * 78.45266 * 30 9 7 47 47 H 1.08999 * 109.91650 * 317.17184 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6967 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 1.9382 -3.7198 -0.0005 11 6 0.8156 -4.7618 0.0530 12 1 1.0282 -5.5843 0.7361 13 6 0.4835 -5.2470 -1.3789 14 6 -1.0355 -5.5399 -1.2589 15 7 -1.5554 -4.4764 -0.3817 16 6 -2.8325 -4.0476 -0.3429 17 8 -3.1531 -3.1655 0.4252 18 6 -3.8623 -4.6642 -1.2542 19 7 -5.1626 -4.0307 -1.0211 20 6 -6.1324 -4.5115 -0.1841 21 6 -7.1949 -3.6911 -0.1961 22 6 -6.8833 -2.6003 -1.1228 23 6 -7.5732 -1.4648 -1.5523 24 6 -6.9883 -0.6137 -2.4468 25 6 -5.7132 -0.8689 -2.9329 26 6 -5.0147 -1.9831 -2.5226 27 6 -5.5903 -2.8625 -1.6110 28 6 -0.4548 -3.9624 0.4501 29 1 -0.6744 -4.0326 1.5155 30 6 -0.1340 -2.5237 -0.0005 31 1 -0.4850 0.8399 0.0004 32 1 2.5832 -3.8283 0.8715 33 1 2.5233 -3.8555 -0.9101 34 1 0.6773 -4.4639 -2.1118 35 1 1.0373 -6.1536 -1.6228 36 1 -1.2008 -6.5183 -0.8077 37 1 -1.5095 -5.4885 -2.2390 38 1 -3.9367 -5.7320 -1.0486 39 1 -3.5655 -4.5139 -2.2923 40 1 -6.0531 -5.4147 0.4024 41 1 -8.1069 -3.8128 0.3695 42 1 -8.5658 -1.2603 -1.1791 43 1 -7.5221 0.2646 -2.7785 44 1 -5.2643 -0.1870 -3.6399 45 1 -4.0232 -2.1726 -2.9062 46 1 -0.5227 -2.3538 -1.0047 47 1 -0.5733 -1.8097 0.6961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076587543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:03 Heat of formation + Delta-G solvation = 78.151576 kcal Electronic energy + Delta-G solvation = -29840.707845 eV Core-core repulsion = 25990.328980 eV Total energy + Delta-G solvation = -3850.378865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.29868 -40.04831 -37.96605 -36.71969 -35.00873 -32.90643 -32.25781 -30.73618 -30.36955 -28.89470 -28.65227 -27.28636 -26.16851 -24.49004 -22.88232 -22.46210 -21.45731 -20.76324 -20.21809 -19.58964 -18.78229 -17.30511 -17.08115 -16.73313 -16.39687 -15.62176 -15.36238 -15.20097 -14.76934 -14.44810 -13.97871 -13.81629 -13.80398 -13.50293 -13.29761 -13.13223 -12.80360 -12.67133 -12.50171 -12.21999 -12.15596 -11.93212 -11.62653 -11.48524 -11.42729 -11.24947 -11.05990 -10.78273 -10.69487 -10.51020 -10.23510 -10.08641 -9.81236 -9.76122 -9.70481 -9.37672 -8.59911 -8.29474 -8.00702 -7.52143 -6.83129 -5.62342 -3.05323 1.30624 1.79797 2.58754 2.81102 2.90929 3.30566 3.42046 3.45933 3.48870 4.11132 4.44918 4.50980 4.61223 4.69830 4.77674 4.86685 4.90305 4.96951 5.12644 5.18594 5.29368 5.39153 5.43456 5.55226 5.57047 5.59869 5.63056 5.74994 5.77629 5.86600 5.94175 5.95850 6.05431 6.14895 6.22574 6.26342 6.47888 6.51577 6.62167 6.64225 6.77987 6.82793 6.90576 6.92338 7.31668 7.37723 7.49872 7.63052 7.80607 7.94327 8.35293 8.43769 9.24117 9.85135 10.46685 11.41761 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003894 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.143131 B = 7189.591306 C = 9147.350049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.098 3.902 15 N -0.607 5.607 16 C 0.502 3.498 17 O -0.504 6.504 18 C 0.097 3.903 19 N -0.468 5.468 20 C 0.059 3.941 21 C -0.205 4.205 22 C -0.109 4.109 23 C -0.076 4.076 24 C -0.148 4.148 25 C -0.100 4.100 26 C -0.118 4.118 27 C 0.112 3.888 28 C 0.115 3.885 29 H 0.082 0.918 30 C 0.168 3.832 31 H 0.254 0.746 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.164 0.836 41 H 0.145 0.855 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.018 0.982 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.861 -14.456 -5.386 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.129 4.129 12 H 0.106 0.894 13 C -0.160 4.160 14 C -0.025 4.025 15 N -0.343 5.343 16 C 0.287 3.713 17 O -0.377 6.377 18 C -0.029 4.029 19 N -0.151 5.151 20 C -0.066 4.066 21 C -0.230 4.230 22 C -0.113 4.113 23 C -0.095 4.095 24 C -0.167 4.167 25 C -0.120 4.120 26 C -0.138 4.138 27 C 0.006 3.994 28 C 0.012 3.988 29 H 0.100 0.900 30 C 0.042 3.958 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.182 0.818 41 H 0.162 0.838 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.134 0.866 46 H 0.036 0.964 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.900 -13.874 -4.997 18.338 hybrid contribution 0.717 0.738 0.014 1.029 sum -10.184 -13.136 -4.983 17.352 Atomic orbital electron populations 1.69904 1.04753 1.25187 1.56132 1.24849 0.95683 0.97767 1.01898 0.86200 0.78425 0.83249 0.77865 1.21179 1.21535 1.21080 1.18966 0.90391 0.82259 1.44776 0.90415 1.44154 1.01538 0.99908 1.87231 1.20972 0.93325 0.85555 0.98251 1.22873 0.95876 0.97924 0.96203 0.89430 1.22832 0.93629 1.01787 0.97708 1.22398 0.95568 0.90622 0.93928 1.48560 1.07761 1.37880 1.40122 1.20411 0.82047 0.83836 0.85014 1.90835 1.78885 1.29053 1.38977 1.21553 0.81968 0.98332 1.01022 1.43377 1.12687 1.20640 1.38353 1.21701 0.88471 1.00394 0.96016 1.21584 1.00226 0.96302 1.04935 1.19168 0.94301 0.97170 1.00690 1.20193 0.99177 0.92976 0.97145 1.20582 0.96031 1.00184 0.99915 1.20781 0.94688 0.96309 1.00174 1.20056 0.99861 0.94971 0.98958 1.18172 0.94514 0.88562 0.98106 1.22991 0.83692 0.97912 0.94226 0.90037 1.21624 0.84317 0.89913 0.99919 0.93505 0.95864 0.95669 0.89840 0.90265 0.91521 0.91167 0.86741 0.87113 0.81828 0.83754 0.86381 0.86320 0.85900 0.86585 0.96380 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 10.17 55.49 0.56 -27.45 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.66 10.25 -15.06 -0.15 -6.81 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.49 3.37 -172.21 -0.58 -16.07 16 10 C 0.15 2.90 6.65 -3.86 -0.03 2.88 16 11 C -0.11 -1.74 3.90 -88.34 -0.34 -2.08 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.12 -1.56 6.25 -24.64 -0.15 -1.71 16 14 C 0.10 1.11 6.68 -2.44 -0.02 1.09 16 15 N -0.61 -9.81 2.85 -161.55 -0.46 -10.27 16 16 C 0.50 8.67 7.74 -10.99 -0.09 8.58 16 17 O -0.50 -11.52 16.53 5.56 0.09 -11.42 16 18 C 0.10 1.20 5.48 -5.19 -0.03 1.17 16 19 N -0.47 -6.78 2.27 -115.71 -0.26 -7.05 16 20 C 0.06 0.75 11.27 -16.73 -0.19 0.56 16 21 C -0.21 -2.73 11.08 -37.67 -0.42 -3.15 16 22 C -0.11 -1.69 6.37 -105.14 -0.67 -2.36 16 23 C -0.08 -1.06 10.05 -39.64 -0.40 -1.46 16 24 C -0.15 -1.99 9.97 -39.95 -0.40 -2.39 16 25 C -0.10 -1.46 10.01 -39.54 -0.40 -1.85 16 26 C -0.12 -1.91 10.00 -39.43 -0.39 -2.30 16 27 C 0.11 1.83 6.80 -83.99 -0.57 1.26 16 28 C 0.12 2.23 3.87 -65.74 -0.25 1.98 16 29 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 30 C 0.17 4.25 4.80 -3.39 -0.02 4.23 16 31 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.03 0.49 7.74 -51.93 -0.40 0.09 16 34 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.64 7.49 -51.93 -0.39 0.26 16 38 H 0.11 0.95 8.12 -51.93 -0.42 0.53 16 39 H 0.11 1.18 7.85 -51.93 -0.41 0.77 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 46 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 47 H 0.10 2.88 6.22 -51.93 -0.32 2.55 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -36.80 381.16 -11.50 -48.29 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.96 Total: 3.27 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -4.61 Total: -2.62 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.74 Total: -60.84 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.80 -11.50 -48.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076587543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.446 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds