Wall clock time and date at job start Tue Mar 31 2020 23:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99560 * 2 1 4 4 H 1.48490 * 109.47607 * 240.00191 * 3 2 1 5 5 H 1.48498 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46537 * 120.00063 * 3 2 1 7 7 C 1.38807 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.46589 * 125.30992 * 180.02562 * 9 7 2 11 11 C 1.53259 * 108.15886 * 177.89131 * 10 9 7 12 12 H 1.09006 * 113.08088 * 222.46436 * 11 10 9 13 13 C 1.54799 * 109.75102 * 95.76552 * 11 10 9 14 14 C 1.55153 * 101.40039 * 212.12758 * 13 11 10 15 15 N 1.47344 * 104.79106 * 37.51674 * 14 13 11 16 16 C 1.34770 * 125.53208 * 156.48543 * 15 14 13 17 17 O 1.21277 * 120.00459 * 179.69535 * 16 15 14 18 18 C 1.50700 * 119.99674 * 359.69760 * 16 15 14 19 19 N 1.46507 * 109.47001 * 179.97438 * 18 16 15 20 20 C 1.36829 * 125.06237 * 265.03995 * 19 18 16 21 21 C 1.34239 * 109.92651 * 179.72327 * 20 19 18 22 22 C 1.46485 * 106.99901 * 0.37286 * 21 20 19 23 23 C 1.39635 * 134.03224 * 179.97438 * 22 21 20 24 24 C 1.36620 * 119.76653 * 179.67826 * 23 22 21 25 25 C 1.38830 * 120.52587 * 0.02562 * 24 23 22 26 26 C 1.37753 * 120.67033 * 359.97438 * 25 24 23 27 27 C 1.37686 * 125.06056 * 85.00181 * 19 18 16 28 28 C 1.47218 * 108.93888 * 336.22727 * 15 14 13 29 29 H 1.09003 * 112.28045 * 236.47174 * 28 15 14 30 30 C 1.46605 * 125.30442 * 0.02562 * 9 7 2 31 31 H 0.96990 * 120.00263 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.73275 * 58.19878 * 10 9 7 33 33 H 1.08999 * 109.71448 * 297.56730 * 10 9 7 34 34 H 1.09001 * 111.01398 * 330.34079 * 13 11 10 35 35 H 1.08996 * 111.02174 * 94.19133 * 13 11 10 36 36 H 1.09004 * 110.48261 * 278.65513 * 14 13 11 37 37 H 1.08996 * 110.32522 * 156.30164 * 14 13 11 38 38 H 1.08995 * 109.47696 * 59.99709 * 18 16 15 39 39 H 1.09004 * 109.47563 * 299.99404 * 18 16 15 40 40 H 1.07993 * 125.03910 * 359.96392 * 20 19 18 41 41 H 1.08004 * 126.50326 * 180.31485 * 21 20 19 42 42 H 1.08000 * 120.11630 * 359.65260 * 23 22 21 43 43 H 1.08001 * 119.74041 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.66307 * 179.97438 * 25 24 23 45 45 H 1.07993 * 120.10903 * 180.02562 * 26 25 24 46 46 H 1.09006 * 109.91692 * 78.45266 * 30 9 7 47 47 H 1.08999 * 109.91650 * 317.17184 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6967 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 1.9382 -3.7198 -0.0005 11 6 0.8156 -4.7618 0.0530 12 1 1.0282 -5.5843 0.7361 13 6 0.4835 -5.2470 -1.3789 14 6 -1.0355 -5.5399 -1.2589 15 7 -1.5554 -4.4764 -0.3817 16 6 -2.8325 -4.0476 -0.3429 17 8 -3.1531 -3.1655 0.4252 18 6 -3.8623 -4.6642 -1.2542 19 7 -5.1626 -4.0307 -1.0211 20 6 -6.1324 -4.5115 -0.1841 21 6 -7.1949 -3.6911 -0.1961 22 6 -6.8833 -2.6003 -1.1228 23 6 -7.5732 -1.4648 -1.5523 24 6 -6.9883 -0.6137 -2.4468 25 6 -5.7132 -0.8689 -2.9329 26 6 -5.0147 -1.9831 -2.5226 27 6 -5.5903 -2.8625 -1.6110 28 6 -0.4548 -3.9624 0.4501 29 1 -0.6744 -4.0326 1.5155 30 6 -0.1340 -2.5237 -0.0005 31 1 -0.4850 0.8399 0.0004 32 1 2.5832 -3.8283 0.8715 33 1 2.5233 -3.8555 -0.9101 34 1 0.6773 -4.4639 -2.1118 35 1 1.0373 -6.1536 -1.6228 36 1 -1.2008 -6.5183 -0.8077 37 1 -1.5095 -5.4885 -2.2390 38 1 -3.9367 -5.7320 -1.0486 39 1 -3.5655 -4.5139 -2.2923 40 1 -6.0531 -5.4147 0.4024 41 1 -8.1069 -3.8128 0.3695 42 1 -8.5658 -1.2603 -1.1791 43 1 -7.5221 0.2646 -2.7785 44 1 -5.2643 -0.1870 -3.6399 45 1 -4.0232 -2.1726 -2.9062 46 1 -0.5227 -2.3538 -1.0047 47 1 -0.5733 -1.8097 0.6961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076587543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:02 Heat of formation + Delta-G solvation = 55.310363 kcal Electronic energy + Delta-G solvation = -29841.698314 eV Core-core repulsion = 25990.328980 eV Total energy + Delta-G solvation = -3851.369334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.36887 -41.39467 -39.40805 -37.82746 -36.69341 -34.29720 -33.76670 -32.28675 -31.50867 -30.45325 -29.77878 -28.69732 -27.53033 -26.39276 -24.07941 -23.54368 -22.59794 -22.32322 -21.56323 -20.84772 -20.13738 -18.98419 -18.38500 -18.16150 -17.45618 -17.09728 -16.65850 -16.43492 -16.30246 -15.95864 -15.29748 -15.16733 -14.97117 -14.92699 -14.60832 -14.47515 -14.10770 -13.91721 -13.76226 -13.55227 -13.48680 -13.25527 -13.09564 -13.01126 -12.78264 -12.63380 -12.50585 -12.47068 -12.26575 -11.91261 -11.78545 -11.74711 -11.51023 -11.43284 -11.08419 -10.77496 -10.55022 -9.67149 -9.10188 -8.95960 -8.58024 -7.83292 -5.29095 0.21271 0.67558 1.38881 1.43545 1.48203 1.50593 1.56665 1.92013 2.14024 2.44674 2.99086 3.26549 3.31004 3.59733 3.64284 3.71175 3.75614 3.82163 3.97003 4.01669 4.04395 4.13064 4.25496 4.30349 4.35777 4.46705 4.53044 4.54698 4.57028 4.69337 4.77709 4.83021 4.90930 4.93080 5.05594 5.09401 5.15512 5.16881 5.18442 5.42413 5.46781 5.52579 5.55147 5.67613 5.76082 5.84825 5.88720 6.19820 6.28375 6.35108 6.56391 7.02221 7.13285 7.74741 8.34443 9.18217 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003894 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.143131 B = 7189.591306 C = 9147.350049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.625 5.625 10 C 0.135 3.865 11 C -0.092 4.092 12 H 0.131 0.869 13 C -0.116 4.116 14 C 0.095 3.905 15 N -0.607 5.607 16 C 0.493 3.507 17 O -0.576 6.576 18 C 0.106 3.894 19 N -0.476 5.476 20 C 0.059 3.941 21 C -0.220 4.220 22 C -0.134 4.134 23 C -0.083 4.083 24 C -0.153 4.153 25 C -0.113 4.113 26 C -0.147 4.147 27 C 0.081 3.919 28 C 0.119 3.881 29 H 0.066 0.934 30 C 0.189 3.811 31 H 0.241 0.759 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.049 0.951 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.127 0.873 40 H 0.204 0.796 41 H 0.170 0.830 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.105 0.895 46 H -0.024 1.024 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 -18.105 -5.950 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.111 4.111 12 H 0.149 0.851 13 C -0.153 4.153 14 C -0.026 4.026 15 N -0.341 5.341 16 C 0.281 3.719 17 O -0.455 6.455 18 C -0.019 4.019 19 N -0.159 5.159 20 C -0.065 4.065 21 C -0.244 4.244 22 C -0.139 4.139 23 C -0.102 4.102 24 C -0.172 4.172 25 C -0.132 4.132 26 C -0.167 4.167 27 C -0.024 4.024 28 C 0.014 3.986 29 H 0.084 0.916 30 C 0.062 3.938 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.187 0.813 39 H 0.145 0.855 40 H 0.220 0.780 41 H 0.187 0.813 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.123 0.877 46 H -0.006 1.006 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.580 -17.607 -5.596 21.290 hybrid contribution 0.697 1.882 0.208 2.017 sum -9.882 -15.726 -5.388 19.339 Atomic orbital electron populations 1.70273 1.06609 1.24863 1.58113 1.25786 0.96435 1.01568 1.02498 0.85118 0.77025 0.78403 0.78628 1.19657 1.22614 1.19777 1.19469 0.91186 0.83603 1.43132 0.89300 1.44489 1.02068 1.01669 1.86973 1.21280 0.94973 0.83938 0.98756 1.22918 0.91547 0.97227 0.99410 0.85095 1.22859 0.95447 1.02660 0.94363 1.22834 0.94218 0.90714 0.94815 1.48667 1.06827 1.38527 1.40059 1.21445 0.83009 0.82836 0.84606 1.90803 1.80273 1.32252 1.42161 1.21773 0.79550 1.00315 1.00259 1.43626 1.13528 1.20268 1.38446 1.22407 0.87620 1.01307 0.95177 1.21984 1.01689 0.95757 1.04958 1.19698 0.94415 0.98356 1.01431 1.20600 1.00265 0.92474 0.96815 1.20931 0.95645 1.01052 0.99604 1.21083 0.95453 0.96137 1.00549 1.20187 0.99863 0.96339 1.00336 1.18472 0.95458 0.89713 0.98800 1.22598 0.87001 0.94989 0.94016 0.91641 1.21092 0.83997 0.92807 0.95863 0.94953 0.95265 0.94499 0.93174 0.85412 0.86749 0.88466 0.81341 0.85512 0.77951 0.81274 0.83762 0.83540 0.84678 0.87722 1.00618 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.74 10.17 21.65 0.22 -62.52 16 2 C -0.07 -4.25 5.48 84.86 0.47 -3.79 16 3 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.25 -14.30 10.25 84.03 0.86 -13.44 16 8 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 9 N -0.63 -33.40 3.37 -698.77 -2.36 -35.75 16 10 C 0.14 5.28 6.65 86.45 0.58 5.85 16 11 C -0.09 -2.67 3.90 -9.32 -0.04 -2.71 16 12 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 13 C -0.12 -2.50 6.25 31.95 0.20 -2.30 16 14 C 0.09 1.71 6.68 86.96 0.58 2.29 16 15 N -0.61 -18.98 2.85 -783.41 -2.23 -21.21 16 16 C 0.49 17.13 7.74 87.66 0.68 17.81 16 17 O -0.58 -28.00 16.53 -3.02 -0.05 -28.05 16 18 C 0.11 2.40 5.48 85.63 0.47 2.87 16 19 N -0.48 -13.49 2.27 -519.98 -1.18 -14.67 16 20 C 0.06 1.39 11.27 83.00 0.94 2.33 16 21 C -0.22 -5.61 11.08 23.51 0.26 -5.35 16 22 C -0.13 -4.20 6.37 -20.20 -0.13 -4.33 16 23 C -0.08 -2.30 10.05 22.23 0.22 -2.08 16 24 C -0.15 -4.17 9.97 22.03 0.22 -3.95 16 25 C -0.11 -3.48 10.01 22.30 0.22 -3.25 16 26 C -0.15 -5.08 10.00 22.37 0.22 -4.86 16 27 C 0.08 2.75 6.80 39.03 0.27 3.01 16 28 C 0.12 4.67 3.87 46.02 0.18 4.85 16 29 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 30 C 0.19 10.21 4.80 86.75 0.42 10.63 16 31 H 0.24 15.80 8.31 -92.72 -0.77 15.03 16 32 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.04 1.37 7.74 -2.39 -0.02 1.35 16 34 H 0.05 1.44 7.88 -2.39 -0.02 1.42 16 35 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.30 7.49 -2.39 -0.02 1.29 16 38 H 0.17 1.94 8.12 -2.39 -0.02 1.92 16 39 H 0.13 2.46 7.85 -2.38 -0.02 2.45 16 40 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 43 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 45 H 0.10 3.65 8.06 -2.91 -0.02 3.63 16 46 H -0.02 -1.46 7.94 -2.38 -0.02 -1.48 16 47 H 0.03 2.14 6.22 -2.39 -0.01 2.12 16 Total: -1.00 -92.99 381.16 4.00 -88.99 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.96 Total: 19.38 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.61 Total: 3.58 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -5.55 Total: -134.14 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -92.99 4.00 -88.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076587543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.301 kcal (2) G-P(sol) polarization free energy of solvation -92.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds