Wall clock time and date at job start Tue Mar 31 2020 22:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47125 * 270.00419 * 3 2 1 5 5 H 1.48494 * 109.46873 * 30.00120 * 3 2 1 6 6 H 1.48496 * 109.46916 * 150.00308 * 3 2 1 7 7 C 1.38809 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99406 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00496 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99989 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.94652 * 23.60460 * 10 9 7 12 12 C 1.53951 * 113.66466 * 252.19086 * 10 9 7 13 13 C 1.53953 * 87.29074 * 220.79694 * 12 10 9 14 14 H 1.08996 * 113.66163 * 139.21209 * 13 12 10 15 15 N 1.46508 * 113.66007 * 270.26239 * 13 12 10 16 16 C 1.34774 * 119.99575 * 252.18853 * 15 13 12 17 17 O 1.21579 * 120.00671 * 0.02562 * 16 15 13 18 18 C 1.47657 * 119.99529 * 180.02562 * 16 15 13 19 19 C 1.40208 * 119.97579 * 359.97438 * 18 16 15 20 20 C 1.36319 * 120.66888 * 179.97438 * 19 18 16 21 21 C 1.39360 * 120.23935 * 0.02868 * 20 19 18 22 22 N 1.37399 * 133.25388 * 180.02562 * 21 20 19 23 23 H 0.97008 * 125.00859 * 0.02562 * 22 21 20 24 24 C 1.36862 * 109.98565 * 179.97438 * 22 21 20 25 25 C 1.34192 * 109.95526 * 359.97438 * 24 22 21 26 26 C 1.40870 * 119.64125 * 359.97438 * 21 20 19 27 27 C 1.39158 * 119.97482 * 179.73051 * 18 16 15 28 28 C 1.52908 * 113.65647 * 155.00069 * 10 9 7 29 29 C 1.52906 * 121.14322 * 265.09609 * 28 10 9 30 30 C 1.53957 * 86.77902 * 100.81952 * 29 28 10 31 31 C 1.52912 * 121.13762 * 13.66395 * 28 10 9 32 32 H 0.96998 * 120.00563 * 359.97438 * 1 2 3 33 33 H 0.96995 * 119.99627 * 0.02562 * 9 7 2 34 34 H 1.09002 * 113.57784 * 335.40103 * 12 10 9 35 35 H 1.08994 * 113.57760 * 106.19408 * 12 10 9 36 36 H 0.96991 * 119.99477 * 72.19064 * 15 13 12 37 37 H 1.08004 * 119.66444 * 0.02562 * 19 18 16 38 38 H 1.08004 * 119.87376 * 180.02562 * 20 19 18 39 39 H 1.07995 * 125.01973 * 179.97438 * 24 22 21 40 40 H 1.07997 * 126.53480 * 180.02562 * 25 24 22 41 41 H 1.08001 * 120.29938 * 359.97438 * 27 18 16 42 42 H 1.08997 * 113.66080 * 346.35409 * 29 28 10 43 43 H 1.08997 * 113.66819 * 215.29213 * 29 28 10 44 44 H 1.09004 * 113.57788 * 139.34050 * 30 29 28 45 45 H 1.08996 * 113.58263 * 270.12959 * 30 29 28 46 46 H 1.09002 * 113.66342 * 144.69991 * 31 28 10 47 47 H 1.08994 * 113.65844 * 13.64914 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5279 -3.2988 -0.4026 12 6 4.7951 -2.7900 1.3412 13 6 6.0004 -3.2917 0.5252 14 1 6.9638 -3.0036 0.9458 15 7 5.9284 -4.7148 0.1845 16 6 6.7408 -5.5968 0.7996 17 8 7.5331 -5.2117 1.6375 18 6 6.6687 -7.0310 0.4558 19 6 5.7544 -7.4746 -0.5102 20 6 5.6762 -8.7953 -0.8389 21 6 6.5073 -9.7241 -0.2154 22 7 6.6547 -11.0849 -0.3348 23 1 6.1443 -11.6494 -0.9364 24 6 7.6286 -11.5266 0.5194 25 6 8.1373 -10.4931 1.2077 26 6 7.4301 -9.2911 0.7569 27 6 7.5116 -7.9406 1.0871 28 6 5.5180 -2.3676 -0.5935 29 6 5.7834 -2.6991 -2.0624 30 6 5.7855 -1.1804 -2.3148 31 6 6.1763 -1.0088 -0.8356 32 1 -0.4851 0.8400 0.0004 33 1 3.8646 -0.3620 -0.0007 34 1 5.0121 -1.9062 1.9411 35 1 4.2956 -3.5751 1.9087 36 1 5.2961 -5.0220 -0.4837 37 1 5.1061 -6.7627 -0.9995 38 1 4.9675 -9.1229 -1.5851 39 1 7.9415 -12.5550 0.6239 40 1 8.9188 -10.5385 1.9517 41 1 8.2204 -7.6026 1.8287 42 1 4.9599 -3.2221 -2.5486 43 1 6.7495 -3.1728 -2.2365 44 1 6.5590 -0.8551 -3.0106 45 1 4.8021 -0.7770 -2.5556 46 1 7.2528 -1.0075 -0.6647 47 1 5.6666 -0.1817 -0.3416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078712555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:32 Heat of formation + Delta-G solvation = 86.868629 kcal Electronic energy + Delta-G solvation = -28690.504349 eV Core-core repulsion = 24840.503484 eV Total energy + Delta-G solvation = -3850.000865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57982 -40.68865 -39.10405 -36.70527 -35.10979 -34.15612 -32.42151 -32.19375 -30.60692 -29.64731 -29.04060 -25.59459 -25.09176 -24.19748 -23.68198 -22.59906 -21.78251 -21.18612 -20.65306 -19.95521 -18.50177 -18.39543 -17.61944 -17.00787 -16.33019 -15.91619 -15.20215 -15.06778 -14.96319 -14.85989 -14.46136 -14.30929 -14.18208 -13.87967 -13.44582 -13.24747 -12.97282 -12.73227 -12.65704 -12.48678 -12.22017 -12.07019 -11.92953 -11.73440 -11.51010 -11.16631 -10.97795 -10.95256 -10.67901 -10.28155 -10.11387 -10.10459 -9.88175 -9.79309 -9.67447 -9.46489 -8.88404 -8.75785 -8.49975 -8.08133 -7.27415 -5.79926 -3.15101 0.77079 0.98823 2.38241 2.74723 2.91274 3.21418 3.35401 3.38147 3.43839 3.81761 4.36509 4.48800 4.56298 4.67889 4.72231 4.75019 4.91977 4.97108 4.98586 5.12942 5.14154 5.17016 5.25713 5.37115 5.39555 5.51937 5.61764 5.67411 5.77919 5.84487 5.92738 5.95032 5.99268 6.04878 6.10661 6.19191 6.20011 6.30255 6.31935 6.34903 6.39534 6.47848 6.61548 6.73595 6.76995 6.81543 6.97835 7.11841 7.66317 7.96669 8.34512 8.39994 9.17827 9.90392 10.10529 11.38305 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002418 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.471374 B =11575.331562 C =12019.771323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.733 5.733 10 C 0.198 3.802 11 H 0.084 0.916 12 C -0.175 4.175 13 C 0.132 3.868 14 H 0.098 0.902 15 N -0.700 5.700 16 C 0.564 3.436 17 O -0.545 6.545 18 C -0.162 4.162 19 C -0.065 4.065 20 C -0.136 4.136 21 C 0.115 3.885 22 N -0.594 5.594 23 H 0.416 0.584 24 C 0.043 3.957 25 C -0.193 4.193 26 C -0.124 4.124 27 C -0.001 4.001 28 C -0.125 4.125 29 C -0.124 4.124 30 C -0.135 4.135 31 C -0.112 4.112 32 H 0.260 0.740 33 H 0.364 0.636 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.567 -21.808 -3.688 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.373 5.373 10 C 0.086 3.914 11 H 0.102 0.898 12 C -0.217 4.217 13 C 0.026 3.974 14 H 0.116 0.884 15 N -0.349 5.349 16 C 0.352 3.648 17 O -0.424 6.424 18 C -0.166 4.166 19 C -0.084 4.084 20 C -0.156 4.156 21 C 0.006 3.994 22 N -0.196 5.196 23 H 0.253 0.747 24 C -0.082 4.082 25 C -0.217 4.217 26 C -0.128 4.128 27 C -0.021 4.021 28 C -0.128 4.128 29 C -0.161 4.161 30 C -0.172 4.172 31 C -0.150 4.150 32 H 0.070 0.930 33 H 0.199 0.801 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.189 0.811 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.790 -21.655 -3.162 27.584 hybrid contribution -0.092 0.741 -0.522 0.911 sum 16.699 -20.914 -3.684 27.015 Atomic orbital electron populations 1.69691 1.05101 1.25850 1.57327 1.24669 0.95211 0.97156 1.01936 0.86622 0.79334 0.85181 0.77862 1.20962 1.21689 1.20266 1.19113 0.80631 0.94708 1.43133 0.89169 1.42741 1.03942 1.02032 1.88573 1.21274 0.87961 0.89995 0.92139 0.89787 1.24245 0.96723 1.00930 0.99809 1.21672 0.99795 0.78985 0.96908 0.88441 1.45485 1.39654 1.07146 1.42636 1.18123 0.80296 0.85441 0.80948 1.90755 1.38432 1.79998 1.33202 1.19642 1.01553 0.93266 1.02142 1.20682 0.96884 0.95089 0.95789 1.19664 1.01196 0.91820 1.02959 1.18437 0.98585 0.83792 0.98572 1.41802 1.34636 1.06057 1.37135 0.74673 1.21838 0.92630 0.99569 0.94155 1.21772 1.04567 0.90317 1.05088 1.19156 0.99838 0.93612 1.00235 1.20679 0.95558 0.89836 0.95992 1.23612 0.99430 0.96236 0.93521 1.22628 1.01105 0.96778 0.95638 1.22775 1.02024 0.96438 0.95966 1.22482 0.99574 0.96076 0.96860 0.93034 0.80147 0.89685 0.91758 0.76502 0.85160 0.85627 0.81117 0.83296 0.84502 0.91420 0.90660 0.92186 0.89405 0.90300 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.25 -6.73 10.45 -15.06 -0.16 -6.89 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 N -0.73 -16.61 5.13 -52.99 -0.27 -16.88 16 10 C 0.20 3.62 4.27 -67.48 -0.29 3.33 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 12 C -0.18 -3.02 7.68 -25.75 -0.20 -3.22 16 13 C 0.13 1.98 4.12 -67.47 -0.28 1.71 16 14 H 0.10 1.56 7.46 -51.93 -0.39 1.18 16 15 N -0.70 -9.27 5.00 -54.37 -0.27 -9.54 16 16 C 0.56 8.21 7.76 -12.42 -0.10 8.11 16 17 O -0.55 -9.76 15.93 5.30 0.08 -9.68 16 18 C -0.16 -1.98 5.87 -104.97 -0.62 -2.60 16 19 C -0.06 -0.64 9.46 -39.53 -0.37 -1.01 16 20 C -0.14 -1.20 10.00 -39.86 -0.40 -1.60 16 21 C 0.11 1.08 7.27 -83.96 -0.61 0.47 16 22 N -0.59 -3.80 6.05 -10.61 -0.06 -3.87 16 23 H 0.42 1.38 8.96 -40.82 -0.37 1.01 16 24 C 0.04 0.26 11.81 -16.73 -0.20 0.06 16 25 C -0.19 -1.58 11.09 -37.65 -0.42 -2.00 16 26 C -0.12 -1.32 6.36 -105.16 -0.67 -1.99 16 27 C 0.00 -0.01 9.64 -38.86 -0.37 -0.39 16 28 C -0.13 -1.89 0.92 -154.71 -0.14 -2.03 16 29 C -0.12 -1.64 7.49 -26.28 -0.20 -1.84 16 30 C -0.13 -1.91 8.08 -25.75 -0.21 -2.12 16 31 C -0.11 -1.66 7.47 -26.28 -0.20 -1.85 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.36 8.19 3.78 -40.82 -0.15 8.04 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.40 4.47 6.62 -40.82 -0.27 4.20 16 37 H 0.13 1.04 6.36 -52.48 -0.33 0.71 16 38 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 40 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.14 1.65 7.64 -52.49 -0.40 1.25 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 1.16 6.42 -51.93 -0.33 0.83 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -34.41 382.69 -10.70 -45.11 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.49 Total: 13.88 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -5.52 Total: -13.78 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.17 Total: -58.41 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.41 -10.70 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078712555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.977 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds