Wall clock time and date at job start Tue Mar 31 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47125 * 270.00419 * 3 2 1 5 5 H 1.48494 * 109.46873 * 30.00120 * 3 2 1 6 6 H 1.48496 * 109.46916 * 150.00308 * 3 2 1 7 7 C 1.38809 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99406 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00496 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99989 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.94652 * 23.60460 * 10 9 7 12 12 C 1.53951 * 113.66466 * 252.19086 * 10 9 7 13 13 C 1.53953 * 87.29074 * 220.79694 * 12 10 9 14 14 H 1.08996 * 113.66163 * 139.21209 * 13 12 10 15 15 N 1.46508 * 113.66007 * 270.26239 * 13 12 10 16 16 C 1.34774 * 119.99575 * 252.18853 * 15 13 12 17 17 O 1.21579 * 120.00671 * 0.02562 * 16 15 13 18 18 C 1.47657 * 119.99529 * 180.02562 * 16 15 13 19 19 C 1.40208 * 119.97579 * 359.97438 * 18 16 15 20 20 C 1.36319 * 120.66888 * 179.97438 * 19 18 16 21 21 C 1.39360 * 120.23935 * 0.02868 * 20 19 18 22 22 N 1.37399 * 133.25388 * 180.02562 * 21 20 19 23 23 H 0.97008 * 125.00859 * 0.02562 * 22 21 20 24 24 C 1.36862 * 109.98565 * 179.97438 * 22 21 20 25 25 C 1.34192 * 109.95526 * 359.97438 * 24 22 21 26 26 C 1.40870 * 119.64125 * 359.97438 * 21 20 19 27 27 C 1.39158 * 119.97482 * 179.73051 * 18 16 15 28 28 C 1.52908 * 113.65647 * 155.00069 * 10 9 7 29 29 C 1.52906 * 121.14322 * 265.09609 * 28 10 9 30 30 C 1.53957 * 86.77902 * 100.81952 * 29 28 10 31 31 C 1.52912 * 121.13762 * 13.66395 * 28 10 9 32 32 H 0.96998 * 120.00563 * 359.97438 * 1 2 3 33 33 H 0.96995 * 119.99627 * 0.02562 * 9 7 2 34 34 H 1.09002 * 113.57784 * 335.40103 * 12 10 9 35 35 H 1.08994 * 113.57760 * 106.19408 * 12 10 9 36 36 H 0.96991 * 119.99477 * 72.19064 * 15 13 12 37 37 H 1.08004 * 119.66444 * 0.02562 * 19 18 16 38 38 H 1.08004 * 119.87376 * 180.02562 * 20 19 18 39 39 H 1.07995 * 125.01973 * 179.97438 * 24 22 21 40 40 H 1.07997 * 126.53480 * 180.02562 * 25 24 22 41 41 H 1.08001 * 120.29938 * 359.97438 * 27 18 16 42 42 H 1.08997 * 113.66080 * 346.35409 * 29 28 10 43 43 H 1.08997 * 113.66819 * 215.29213 * 29 28 10 44 44 H 1.09004 * 113.57788 * 139.34050 * 30 29 28 45 45 H 1.08996 * 113.58263 * 270.12959 * 30 29 28 46 46 H 1.09002 * 113.66342 * 144.69991 * 31 28 10 47 47 H 1.08994 * 113.65844 * 13.64914 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5279 -3.2988 -0.4026 12 6 4.7951 -2.7900 1.3412 13 6 6.0004 -3.2917 0.5252 14 1 6.9638 -3.0036 0.9458 15 7 5.9284 -4.7148 0.1845 16 6 6.7408 -5.5968 0.7996 17 8 7.5331 -5.2117 1.6375 18 6 6.6687 -7.0310 0.4558 19 6 5.7544 -7.4746 -0.5102 20 6 5.6762 -8.7953 -0.8389 21 6 6.5073 -9.7241 -0.2154 22 7 6.6547 -11.0849 -0.3348 23 1 6.1443 -11.6494 -0.9364 24 6 7.6286 -11.5266 0.5194 25 6 8.1373 -10.4931 1.2077 26 6 7.4301 -9.2911 0.7569 27 6 7.5116 -7.9406 1.0871 28 6 5.5180 -2.3676 -0.5935 29 6 5.7834 -2.6991 -2.0624 30 6 5.7855 -1.1804 -2.3148 31 6 6.1763 -1.0088 -0.8356 32 1 -0.4851 0.8400 0.0004 33 1 3.8646 -0.3620 -0.0007 34 1 5.0121 -1.9062 1.9411 35 1 4.2956 -3.5751 1.9087 36 1 5.2961 -5.0220 -0.4837 37 1 5.1061 -6.7627 -0.9995 38 1 4.9675 -9.1229 -1.5851 39 1 7.9415 -12.5550 0.6239 40 1 8.9188 -10.5385 1.9517 41 1 8.2204 -7.6026 1.8287 42 1 4.9599 -3.2221 -2.5486 43 1 6.7495 -3.1728 -2.2365 44 1 6.5590 -0.8551 -3.0106 45 1 4.8021 -0.7770 -2.5556 46 1 7.2528 -1.0075 -0.6647 47 1 5.6666 -0.1817 -0.3416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078712555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:31 Heat of formation + Delta-G solvation = 64.999456 kcal Electronic energy + Delta-G solvation = -28691.452668 eV Core-core repulsion = 24840.503484 eV Total energy + Delta-G solvation = -3850.949183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28168 -41.90599 -40.22699 -37.51191 -36.42728 -35.86582 -33.91835 -32.96420 -32.38480 -30.53387 -29.70911 -26.75090 -26.65712 -25.52924 -24.84034 -23.35448 -23.32560 -21.99058 -21.60509 -21.08266 -20.21429 -19.19168 -18.87077 -18.15281 -17.34728 -16.93746 -16.59835 -16.53891 -16.16684 -15.92140 -15.65353 -15.30842 -15.01302 -14.87985 -14.75872 -14.30682 -14.12295 -14.03191 -13.87059 -13.63304 -13.45762 -13.38436 -13.18009 -12.94794 -12.83159 -12.53369 -12.49029 -12.12492 -11.94260 -11.89230 -11.85872 -11.33821 -11.26692 -10.95753 -10.93164 -10.80033 -10.74375 -9.96120 -9.27259 -9.22280 -8.73237 -8.01522 -5.33367 -0.06084 0.27113 1.36853 1.38998 1.45911 1.80317 1.91737 2.09989 2.23984 2.47895 2.95502 3.28109 3.44245 3.52576 3.69369 3.73971 3.78030 3.87808 3.92874 3.95475 4.02079 4.18663 4.19826 4.29965 4.43407 4.55261 4.61044 4.69140 4.71292 4.74228 4.85360 4.89398 4.96688 5.01457 5.06408 5.08797 5.10682 5.14542 5.21757 5.34942 5.40506 5.52611 5.60238 5.61330 5.66823 5.74096 5.79743 6.09030 6.23813 6.58005 6.69522 7.08966 7.23428 7.86118 8.05259 9.19982 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.002418 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.471374 B =11575.331562 C =12019.771323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.256 1.256 7 C -0.226 4.226 8 H 0.061 0.939 9 N -0.735 5.735 10 C 0.184 3.816 11 H 0.083 0.917 12 C -0.175 4.175 13 C 0.148 3.852 14 H 0.093 0.907 15 N -0.689 5.689 16 C 0.564 3.436 17 O -0.586 6.586 18 C -0.178 4.178 19 C -0.073 4.073 20 C -0.128 4.128 21 C 0.105 3.895 22 N -0.581 5.581 23 H 0.434 0.566 24 C 0.068 3.932 25 C -0.226 4.226 26 C -0.146 4.146 27 C -0.020 4.020 28 C -0.115 4.115 29 C -0.112 4.112 30 C -0.134 4.134 31 C -0.114 4.114 32 H 0.256 0.744 33 H 0.367 0.633 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.411 0.589 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.215 0.785 40 H 0.158 0.842 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.503 -23.930 -5.384 30.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.181 1.181 7 C -0.357 4.357 8 H 0.079 0.921 9 N -0.376 5.376 10 C 0.074 3.926 11 H 0.101 0.899 12 C -0.217 4.217 13 C 0.041 3.959 14 H 0.111 0.889 15 N -0.339 5.339 16 C 0.354 3.646 17 O -0.468 6.468 18 C -0.182 4.182 19 C -0.093 4.093 20 C -0.149 4.149 21 C -0.005 4.005 22 N -0.185 5.185 23 H 0.274 0.726 24 C -0.058 4.058 25 C -0.250 4.250 26 C -0.151 4.151 27 C -0.040 4.040 28 C -0.118 4.118 29 C -0.149 4.149 30 C -0.171 4.171 31 C -0.152 4.152 32 H 0.065 0.935 33 H 0.202 0.798 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.249 0.751 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.231 0.769 40 H 0.176 0.824 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.761 -23.840 -4.893 30.729 hybrid contribution -0.675 1.149 0.036 1.333 sum 18.086 -22.691 -4.857 29.420 Atomic orbital electron populations 1.69863 1.06992 1.26481 1.59992 1.25416 0.96004 1.00889 1.03040 0.85564 0.78617 0.80340 0.78243 1.20083 1.22544 1.18091 1.19090 0.82648 0.93419 1.40548 0.92147 1.42713 1.02307 1.03822 1.88797 1.21534 0.89302 0.88235 0.93485 0.89945 1.24159 0.97804 1.00553 0.99187 1.21409 0.98355 0.79961 0.96162 0.88943 1.45366 1.39655 1.06295 1.42626 1.18524 0.79516 0.86479 0.80125 1.90725 1.40197 1.80804 1.35060 1.19526 1.03184 0.91716 1.03816 1.20840 0.96744 0.96191 0.95494 1.19979 1.00951 0.91196 1.02743 1.18625 0.98355 0.85241 0.98301 1.41896 1.34453 1.05127 1.37021 0.72612 1.22497 0.90648 1.00826 0.91844 1.22057 1.05957 0.90157 1.06846 1.19464 1.00914 0.93646 1.01060 1.20674 0.95915 0.90962 0.96405 1.23383 0.96420 0.97017 0.94953 1.22627 1.02388 0.96496 0.93381 1.22727 1.01462 0.96953 0.95998 1.22587 1.00713 0.94758 0.97166 0.93462 0.79828 0.90532 0.92567 0.75130 0.83475 0.82676 0.76858 0.82415 0.86028 0.91005 0.88473 0.89753 0.91861 0.88006 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.73 13.97 21.65 0.30 -62.43 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.94 45.52 27.74 68.60 1.90 47.42 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 6 H -0.26 -11.30 6.52 99.48 0.65 -10.66 16 7 C -0.23 -12.61 10.45 84.03 0.88 -11.73 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 N -0.74 -33.32 5.13 -321.55 -1.65 -34.97 16 10 C 0.18 6.68 4.27 45.28 0.19 6.87 16 11 H 0.08 3.01 8.10 -2.38 -0.02 2.99 16 12 C -0.18 -6.06 7.68 31.23 0.24 -5.82 16 13 C 0.15 4.31 4.12 45.28 0.19 4.50 16 14 H 0.09 2.90 7.46 -2.39 -0.02 2.88 16 15 N -0.69 -17.78 5.00 -444.18 -2.22 -20.00 16 16 C 0.56 16.56 7.76 86.73 0.67 17.23 16 17 O -0.59 -21.64 15.93 -3.96 -0.06 -21.71 16 18 C -0.18 -4.39 5.87 -20.09 -0.12 -4.51 16 19 C -0.07 -1.35 9.46 22.30 0.21 -1.13 16 20 C -0.13 -1.97 10.00 22.09 0.22 -1.75 16 21 C 0.10 1.74 7.27 39.19 0.28 2.03 16 22 N -0.58 -5.48 6.05 -187.49 -1.13 -6.62 16 23 H 0.43 1.12 8.96 -92.70 -0.83 0.29 16 24 C 0.07 0.58 11.81 82.98 0.98 1.56 16 25 C -0.23 -3.39 11.09 23.52 0.26 -3.13 16 26 C -0.15 -3.04 6.36 -20.21 -0.13 -3.17 16 27 C -0.02 -0.50 9.64 22.74 0.22 -0.28 16 28 C -0.12 -3.30 0.92 -52.31 -0.05 -3.34 16 29 C -0.11 -2.64 7.49 30.89 0.23 -2.41 16 30 C -0.13 -3.46 8.08 31.23 0.25 -3.21 16 31 C -0.11 -3.14 7.47 30.88 0.23 -2.91 16 32 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.37 16.23 3.78 -92.71 -0.35 15.87 16 34 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 8.64 6.62 -92.72 -0.61 8.03 16 37 H 0.15 2.07 6.36 -2.91 -0.02 2.05 16 38 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 39 H 0.21 -0.09 8.06 -2.91 -0.02 -0.12 16 40 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.12 3.23 7.64 -2.91 -0.02 3.21 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.05 1.64 6.42 -2.39 -0.02 1.62 16 Total: -1.00 -77.92 382.69 1.55 -76.37 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.83 Total: 36.29 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.24 Total: -14.37 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -4.70 Total: -124.01 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Total: -77.92 1.55 -76.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078712555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.374 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds