Wall clock time and date at job start Tue Mar 31 2020 22:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48493 * 109.47285 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47175 * 300.00670 * 3 2 1 6 6 H 1.48503 * 109.46820 * 60.00346 * 3 2 1 7 7 C 1.38807 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00320 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00355 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00499 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.88698 * 336.34278 * 10 9 7 12 12 C 1.53949 * 113.75133 * 107.76862 * 10 9 7 13 13 C 1.53960 * 87.29667 * 139.21816 * 12 10 9 14 14 H 1.08998 * 113.74263 * 89.75411 * 13 12 10 15 15 N 1.46498 * 113.66084 * 220.79906 * 13 12 10 16 16 C 1.34779 * 119.99933 * 252.18283 * 15 13 12 17 17 O 1.21576 * 119.99412 * 0.02562 * 16 15 13 18 18 C 1.47648 * 119.99997 * 180.02562 * 16 15 13 19 19 C 1.40210 * 119.97733 * 359.97438 * 18 16 15 20 20 C 1.36311 * 120.67216 * 179.97438 * 19 18 16 21 21 C 1.39374 * 120.23919 * 0.02562 * 20 19 18 22 22 N 1.37391 * 133.25403 * 179.97438 * 21 20 19 23 23 H 0.97001 * 125.00943 * 0.04923 * 22 21 20 24 24 C 1.36861 * 109.98270 * 180.02562 * 22 21 20 25 25 C 1.34188 * 109.95864 * 0.02562 * 24 22 21 26 26 C 1.40875 * 119.63591 * 359.97438 * 21 20 19 27 27 C 1.39158 * 119.97333 * 180.22135 * 18 16 15 28 28 C 1.52907 * 86.77935 * 335.26962 * 13 12 10 29 29 C 1.52912 * 121.13956 * 259.17605 * 28 13 12 30 30 C 1.53946 * 86.78463 * 209.38379 * 29 28 13 31 31 C 1.52909 * 121.13460 * 150.61757 * 28 13 12 32 32 H 0.96998 * 120.00241 * 359.97438 * 1 2 3 33 33 H 0.97000 * 119.99602 * 0.02562 * 9 7 2 34 34 H 1.09004 * 113.57645 * 24.62166 * 12 10 9 35 35 H 1.08996 * 113.58128 * 253.82295 * 12 10 9 36 36 H 0.96998 * 120.00080 * 72.19236 * 15 13 12 37 37 H 1.08000 * 119.66430 * 359.97438 * 19 18 16 38 38 H 1.07996 * 119.88387 * 180.02562 * 20 19 18 39 39 H 1.08002 * 125.01844 * 179.97438 * 24 22 21 40 40 H 1.08004 * 126.53812 * 180.02562 * 25 24 22 41 41 H 1.08001 * 120.30125 * 359.80410 * 27 18 16 42 42 H 1.09005 * 113.66049 * 323.86108 * 29 28 13 43 43 H 1.09003 * 113.66229 * 94.91034 * 29 28 13 44 44 H 1.08996 * 113.58203 * 270.12725 * 30 29 28 45 45 H 1.09006 * 113.57607 * 139.33825 * 30 29 28 46 46 H 1.08997 * 113.66419 * 265.08700 * 31 28 13 47 47 H 1.08997 * 113.66747 * 36.14791 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0666 -3.5640 -0.4035 12 6 1.9957 -4.4087 1.3413 13 6 1.8271 -5.7030 0.5249 14 1 2.7699 -6.1865 0.2691 15 7 0.8457 -6.6317 1.0911 16 6 1.2584 -7.7699 1.6833 17 8 2.4452 -8.0255 1.7480 18 6 0.2693 -8.7061 2.2534 19 6 -1.0992 -8.4104 2.1790 20 6 -2.0246 -9.2649 2.7001 21 6 -1.6195 -10.4475 3.3164 22 7 -2.3017 -11.4772 3.9180 23 1 -3.2663 -11.5293 4.0060 24 6 -1.4196 -12.4190 4.3742 25 6 -0.1625 -12.0437 4.0926 26 6 -0.2473 -10.7561 3.3976 27 6 0.6963 -9.8789 2.8689 28 6 1.2658 -4.8229 -0.5924 29 6 -0.2405 -4.7144 -0.8324 30 6 0.1011 -4.4607 -2.3119 31 6 1.4183 -5.2175 -2.0619 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 1.1224 -4.1558 1.9427 35 1 2.9263 -4.3684 1.9074 36 1 -0.1012 -6.4275 1.0396 37 1 -1.4235 -7.4964 1.7039 38 1 -3.0755 -9.0247 2.6354 39 1 -1.6948 -13.3294 4.8861 40 1 0.7397 -12.5875 4.3313 41 1 1.7495 -10.1103 2.9292 42 1 -0.7790 -5.6466 -0.6612 43 1 -0.7019 -3.8600 -0.3372 44 1 0.2424 -3.4071 -2.5523 45 1 -0.5681 -4.9680 -3.0070 46 1 2.2820 -4.7649 -2.5490 47 1 1.3460 -6.2909 -2.2364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078712556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:37 Heat of formation + Delta-G solvation = 81.851695 kcal Electronic energy + Delta-G solvation = -28587.170104 eV Core-core repulsion = 24736.951688 eV Total energy + Delta-G solvation = -3850.218416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56349 -40.53832 -39.02410 -36.67292 -34.81873 -34.09423 -32.51571 -32.22589 -30.22628 -29.49240 -29.01562 -25.46815 -24.98568 -24.10852 -23.64619 -22.58156 -21.86352 -21.10566 -20.41361 -20.06912 -18.45639 -18.01276 -17.50135 -16.77347 -16.44010 -15.91755 -15.10966 -15.07341 -14.88079 -14.64705 -14.39974 -14.26805 -14.19500 -13.86196 -13.42996 -13.08186 -12.90757 -12.83255 -12.62242 -12.42765 -12.05744 -11.87664 -11.68268 -11.46576 -11.20344 -11.14185 -10.90004 -10.76939 -10.67616 -10.15919 -10.10114 -10.01510 -9.94088 -9.82835 -9.57819 -9.40862 -8.84383 -8.66537 -8.45272 -8.06516 -6.95890 -5.79517 -3.07434 0.79182 1.00378 2.39254 2.75625 2.95576 3.35284 3.42651 3.49410 3.50903 3.84843 4.37895 4.49971 4.58291 4.73782 4.79559 4.85671 4.98494 4.99721 5.10798 5.15134 5.26853 5.28688 5.29339 5.41532 5.48429 5.63172 5.71862 5.79400 5.93593 5.93702 6.01710 6.04005 6.08392 6.11232 6.20257 6.28520 6.32972 6.36415 6.40886 6.44622 6.54974 6.64678 6.68640 6.78958 6.89804 6.97042 7.11858 7.12966 7.70991 7.74765 8.39410 8.41022 9.51321 10.08262 10.43288 11.42909 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.002246 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.665767 B =12464.025069 C =12538.750485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.192 3.808 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.131 3.869 14 H 0.111 0.889 15 N -0.707 5.707 16 C 0.560 3.440 17 O -0.547 6.547 18 C -0.162 4.162 19 C -0.065 4.065 20 C -0.136 4.136 21 C 0.114 3.886 22 N -0.594 5.594 23 H 0.416 0.584 24 C 0.043 3.957 25 C -0.193 4.193 26 C -0.124 4.124 27 C -0.002 4.002 28 C -0.120 4.120 29 C -0.117 4.117 30 C -0.130 4.130 31 C -0.126 4.126 32 H 0.254 0.746 33 H 0.386 0.614 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.397 0.603 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 -24.952 5.105 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.079 3.921 11 H 0.099 0.901 12 C -0.216 4.216 13 C 0.026 3.974 14 H 0.129 0.871 15 N -0.357 5.357 16 C 0.348 3.652 17 O -0.426 6.426 18 C -0.166 4.166 19 C -0.085 4.085 20 C -0.157 4.157 21 C 0.005 3.995 22 N -0.196 5.196 23 H 0.253 0.747 24 C -0.082 4.082 25 C -0.217 4.217 26 C -0.128 4.128 27 C -0.021 4.021 28 C -0.122 4.122 29 C -0.155 4.155 30 C -0.167 4.167 31 C -0.164 4.164 32 H 0.064 0.936 33 H 0.222 0.778 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.234 0.766 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.189 0.811 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.013 -24.969 5.157 26.195 hybrid contribution -0.936 0.936 0.178 1.336 sum -6.949 -24.032 5.336 25.580 Atomic orbital electron populations 1.69659 1.05085 1.25582 1.57737 1.24735 0.95517 0.97705 1.02915 0.86129 0.78884 0.84140 0.77122 1.20513 1.21928 1.21924 1.19352 0.91156 0.84103 1.42524 0.91001 1.42349 1.05821 0.99492 1.86774 1.21059 0.94734 0.84329 0.91933 0.90054 1.24275 1.01818 0.95338 1.00193 1.22299 0.92587 0.87660 0.94812 0.87140 1.45890 1.10625 1.20881 1.58291 1.18164 0.88073 0.81108 0.77845 1.90747 1.17234 1.75870 1.58729 1.19703 0.93298 0.97401 1.06203 1.20671 0.91626 0.98608 0.97613 1.19653 0.99970 0.92987 1.03058 1.18434 0.91709 0.90941 0.98387 1.41791 1.09020 1.17950 1.50882 0.74700 1.21834 0.89253 0.94996 1.02143 1.21774 0.97064 0.96474 1.06421 1.19165 0.91984 0.96943 1.04735 1.20686 0.99467 0.90454 0.91502 1.23611 0.97256 0.98086 0.93266 1.22429 0.94525 1.01050 0.97473 1.22725 0.96688 1.01534 0.95749 1.22703 0.98506 0.99233 0.95916 0.93564 0.77794 0.90204 0.92085 0.76634 0.85298 0.85682 0.81124 0.83290 0.84486 0.91236 0.90303 0.89132 0.92583 0.91491 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.49 9.97 -15.06 -0.15 -6.64 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -16.88 5.33 -53.00 -0.28 -17.16 16 10 C 0.19 3.74 4.36 -67.49 -0.29 3.44 16 11 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 12 C -0.17 -3.12 7.69 -25.74 -0.20 -3.32 16 13 C 0.13 2.07 4.12 -67.48 -0.28 1.79 16 14 H 0.11 1.84 7.46 -51.93 -0.39 1.46 16 15 N -0.71 -9.89 5.20 -54.37 -0.28 -10.17 16 16 C 0.56 8.51 7.76 -12.42 -0.10 8.41 16 17 O -0.55 -10.09 15.93 5.30 0.08 -10.01 16 18 C -0.16 -2.06 5.87 -104.97 -0.62 -2.68 16 19 C -0.07 -0.68 9.46 -39.54 -0.37 -1.05 16 20 C -0.14 -1.24 10.00 -39.85 -0.40 -1.64 16 21 C 0.11 1.10 7.27 -83.95 -0.61 0.49 16 22 N -0.59 -3.90 6.05 -10.61 -0.06 -3.97 16 23 H 0.42 1.43 8.96 -40.82 -0.37 1.07 16 24 C 0.04 0.27 11.81 -16.73 -0.20 0.07 16 25 C -0.19 -1.62 11.09 -37.65 -0.42 -2.04 16 26 C -0.12 -1.35 6.36 -105.16 -0.67 -2.02 16 27 C 0.00 -0.02 9.64 -38.86 -0.37 -0.39 16 28 C -0.12 -1.91 1.06 -154.71 -0.16 -2.07 16 29 C -0.12 -1.76 6.77 -26.28 -0.18 -1.94 16 30 C -0.13 -1.98 8.08 -25.75 -0.21 -2.19 16 31 C -0.13 -1.86 7.84 -26.28 -0.21 -2.07 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.39 9.69 5.92 -40.82 -0.24 9.45 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.40 4.76 5.04 -40.82 -0.21 4.56 16 37 H 0.13 1.10 6.36 -52.49 -0.33 0.77 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.17 0.42 8.06 -52.49 -0.42 -0.01 16 40 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.14 1.71 7.64 -52.49 -0.40 1.31 16 42 H 0.07 0.87 7.03 -51.93 -0.36 0.50 16 43 H 0.08 1.37 6.42 -51.93 -0.33 1.03 16 44 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -33.12 383.21 -11.00 -44.13 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -6.41 Total: 15.25 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -5.53 Total: -14.31 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.10 Total: -57.98 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.12 -11.00 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078712556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.978 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds