Wall clock time and date at job start Tue Mar 31 2020 22:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00281 * 2 1 4 4 H 1.48499 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47196 * 300.00050 * 3 2 1 6 6 H 1.48501 * 109.47072 * 60.00432 * 3 2 1 7 7 C 1.38820 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00158 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.88713 * 23.65573 * 10 9 7 12 12 C 1.54146 * 113.66054 * 252.22394 * 10 9 7 13 13 C 1.53954 * 87.22707 * 270.16828 * 12 10 9 14 14 H 1.09002 * 113.66501 * 220.82623 * 13 12 10 15 15 N 1.46505 * 113.65721 * 89.86472 * 13 12 10 16 16 C 1.34776 * 119.99539 * 106.01578 * 15 13 12 17 17 O 1.21586 * 120.00587 * 359.97438 * 16 15 13 18 18 C 1.47509 * 119.99587 * 179.97438 * 16 15 13 19 19 C 1.39352 * 120.20792 * 359.97438 * 18 16 15 20 20 C 1.38317 * 120.49395 * 179.97438 * 19 18 16 21 21 C 1.37915 * 120.59184 * 359.97438 * 20 19 18 22 22 C 1.39530 * 119.99172 * 0.02604 * 21 20 19 23 23 C 1.46576 * 133.95962 * 180.02562 * 22 21 20 24 24 C 1.34214 * 106.89014 * 179.32032 * 23 22 21 25 25 N 1.36901 * 109.88456 * 0.55979 * 24 23 22 26 26 H 0.96997 * 125.01814 * 179.48350 * 25 24 23 27 27 C 1.37128 * 109.96895 * 359.50287 * 25 24 23 28 28 C 1.52906 * 86.88484 * 335.34695 * 13 12 10 29 29 C 1.52907 * 121.13720 * 259.13292 * 28 13 12 30 30 C 1.53956 * 86.78503 * 209.38073 * 29 28 13 31 31 C 1.52908 * 121.14082 * 150.57014 * 28 13 12 32 32 H 0.96994 * 119.99679 * 359.97438 * 1 2 3 33 33 H 0.97008 * 119.99843 * 0.02562 * 9 7 2 34 34 H 1.08999 * 113.57544 * 155.60210 * 12 10 9 35 35 H 1.08992 * 113.63953 * 24.75406 * 12 10 9 36 36 H 0.97000 * 119.99713 * 286.00922 * 15 13 12 37 37 H 1.07997 * 119.75320 * 0.02562 * 19 18 16 38 38 H 1.08002 * 119.70140 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.99979 * 179.97438 * 21 20 19 40 40 H 1.07994 * 126.54973 * 359.95397 * 23 22 21 41 41 H 1.08000 * 125.05591 * 180.02562 * 24 23 22 42 42 H 1.09005 * 113.66022 * 323.85208 * 29 28 13 43 43 H 1.09001 * 113.66746 * 94.90349 * 29 28 13 44 44 H 1.08994 * 113.57689 * 270.12977 * 30 29 28 45 45 H 1.08999 * 113.58120 * 139.33734 * 30 29 28 46 46 H 1.08994 * 113.66294 * 265.09463 * 31 28 13 47 47 H 1.08999 * 113.66066 * 36.14351 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0665 -3.5641 0.4024 12 6 1.9940 -4.4081 -1.3450 13 6 0.7264 -5.1006 -0.8123 14 1 0.6712 -6.1611 -1.0579 15 7 -0.5110 -4.3793 -1.1202 16 6 -1.3434 -4.8451 -2.0724 17 8 -1.0671 -5.8636 -2.6763 18 6 -2.5896 -4.1192 -2.3821 19 6 -2.9108 -2.9517 -1.6924 20 6 -4.0775 -2.2660 -1.9783 21 6 -4.9414 -2.7254 -2.9501 22 6 -4.6420 -3.8921 -3.6546 23 6 -5.3173 -4.6392 -4.7196 24 6 -4.5362 -5.6901 -5.0142 25 7 -3.4239 -5.6819 -4.2161 26 1 -2.7170 -6.3456 -4.2397 27 6 -3.4569 -4.5970 -3.3780 28 6 1.2655 -4.8230 0.5914 29 6 1.9580 -5.9181 1.4033 30 6 1.4400 -5.1939 2.6593 31 6 0.3199 -4.6163 1.7751 32 1 -0.4849 0.8400 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 2.8294 -5.0900 -1.5036 35 1 1.8092 -3.7583 -2.2003 36 1 -0.7313 -3.5666 -0.6387 37 1 -2.2433 -2.5790 -0.9295 38 1 -4.3136 -1.3622 -1.4361 39 1 -5.8500 -2.1827 -3.1653 40 1 -6.2579 -4.3861 -5.1858 41 1 -4.7568 -6.4364 -5.7631 42 1 1.5258 -6.9085 1.2599 43 1 3.0440 -5.9109 1.3108 44 1 2.1268 -4.4389 3.0416 45 1 1.0789 -5.8697 3.4345 46 1 0.0973 -3.5691 1.9795 47 1 -0.5727 -5.2407 1.7361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078728939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:00 Heat of formation + Delta-G solvation = 82.554577 kcal Electronic energy + Delta-G solvation = -29832.995489 eV Core-core repulsion = 25982.807553 eV Total energy + Delta-G solvation = -3850.187936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27975 -40.52838 -38.60156 -36.60801 -35.25249 -33.68443 -32.48645 -31.61752 -29.92677 -29.32102 -28.59418 -25.49521 -24.89645 -24.16389 -23.76518 -22.36416 -21.64220 -20.99203 -20.37072 -19.90795 -18.53883 -17.50149 -17.02309 -16.81792 -15.98804 -15.72173 -15.17333 -14.99108 -14.86365 -14.54657 -14.32988 -14.10123 -13.86557 -13.70818 -13.24904 -13.05505 -12.93359 -12.60270 -12.42816 -12.12731 -11.91768 -11.66198 -11.53185 -11.46522 -11.37148 -11.23329 -10.95132 -10.88906 -10.69928 -10.18733 -10.08947 -9.86206 -9.75313 -9.65871 -9.52274 -9.40173 -8.91968 -8.52890 -8.13772 -7.66272 -7.09390 -5.90235 -3.18236 0.85499 1.77702 2.58527 3.25946 3.28707 3.37625 3.42870 3.45583 3.46718 4.13066 4.46714 4.74135 4.75768 4.85350 4.99998 5.03994 5.11398 5.17116 5.18798 5.31088 5.33434 5.40240 5.51240 5.59498 5.65334 5.82760 5.86567 5.91714 5.95815 5.98555 5.99613 6.02448 6.08704 6.15438 6.25592 6.34826 6.46772 6.50874 6.60805 6.67735 6.69003 6.74266 6.79162 6.80078 6.93365 7.09177 7.21883 7.63047 7.63963 7.90823 8.29335 8.52611 9.40410 9.93754 10.27910 11.32809 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.004173 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.192760 B = 6708.192087 C = 8648.731144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.699 5.699 10 C 0.191 3.809 11 H 0.067 0.933 12 C -0.186 4.186 13 C 0.138 3.862 14 H 0.090 0.910 15 N -0.690 5.690 16 C 0.566 3.434 17 O -0.568 6.568 18 C -0.154 4.154 19 C -0.044 4.044 20 C -0.152 4.152 21 C -0.046 4.046 22 C -0.128 4.128 23 C -0.205 4.205 24 C 0.043 3.957 25 N -0.580 5.580 26 H 0.425 0.575 27 C 0.151 3.849 28 C -0.130 4.130 29 C -0.106 4.106 30 C -0.134 4.134 31 C -0.127 4.127 32 H 0.257 0.743 33 H 0.379 0.621 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.408 0.592 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 -11.280 -3.182 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.079 3.921 11 H 0.085 0.915 12 C -0.228 4.228 13 C 0.032 3.968 14 H 0.108 0.892 15 N -0.341 5.341 16 C 0.355 3.645 17 O -0.450 6.450 18 C -0.159 4.159 19 C -0.064 4.064 20 C -0.171 4.171 21 C -0.065 4.065 22 C -0.132 4.132 23 C -0.230 4.230 24 C -0.083 4.083 25 N -0.183 5.183 26 H 0.265 0.735 27 C 0.040 3.960 28 C -0.132 4.132 29 C -0.144 4.144 30 C -0.171 4.171 31 C -0.165 4.165 32 H 0.067 0.933 33 H 0.214 0.786 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.247 0.753 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.186 0.814 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.215 -11.909 -3.607 14.383 hybrid contribution 0.348 1.077 0.029 1.133 sum -6.866 -10.832 -3.578 13.314 Atomic orbital electron populations 1.69604 1.05059 1.25893 1.57392 1.24705 0.95574 0.97671 1.02467 0.86102 0.78848 0.83931 0.77186 1.20563 1.21834 1.21814 1.19311 0.91215 0.83674 1.43163 0.90834 1.42102 1.05240 0.99414 1.87091 1.20915 0.94621 0.84693 0.91873 0.91510 1.24313 0.96545 1.00249 1.01682 1.21641 0.83659 0.95854 0.95597 0.89201 1.45630 1.21180 1.28880 1.38394 1.18141 0.83001 0.83952 0.79368 1.90614 1.76453 1.25876 1.52020 1.18937 0.96293 0.99477 1.01230 1.21306 0.96355 0.91650 0.97057 1.20875 0.95030 1.01293 0.99907 1.20697 0.98644 0.93440 0.93674 1.19188 0.95634 0.97651 1.00768 1.21642 1.01856 0.97669 1.01847 1.21870 0.87977 1.00844 0.97641 1.41951 1.21404 1.23604 1.31369 0.73530 1.17936 0.95618 0.89217 0.93259 1.23571 0.98736 0.98880 0.92025 1.22511 0.99888 0.96609 0.95427 1.22745 0.98848 0.99604 0.95911 1.22580 0.96271 1.02166 0.95447 0.93339 0.78607 0.90460 0.90966 0.75304 0.84350 0.85023 0.85758 0.83639 0.81397 0.90370 0.91347 0.90040 0.92186 0.90144 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.72 13.06 55.49 0.72 -24.99 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.32 9.97 -15.06 -0.15 -6.47 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.70 -16.07 4.74 -52.89 -0.25 -16.32 16 10 C 0.19 3.65 4.37 -67.38 -0.29 3.35 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.19 -3.34 7.70 -25.64 -0.20 -3.54 16 13 C 0.14 2.36 4.09 -67.48 -0.28 2.08 16 14 H 0.09 1.54 7.50 -51.93 -0.39 1.15 16 15 N -0.69 -12.31 4.88 -54.42 -0.27 -12.57 16 16 C 0.57 10.41 7.76 -12.48 -0.10 10.31 16 17 O -0.57 -11.10 14.78 5.29 0.08 -11.02 16 18 C -0.15 -2.64 5.88 -104.87 -0.62 -3.25 16 19 C -0.04 -0.72 9.52 -39.14 -0.37 -1.09 16 20 C -0.15 -2.18 10.00 -39.67 -0.40 -2.58 16 21 C -0.05 -0.61 10.09 -39.22 -0.40 -1.01 16 22 C -0.13 -1.85 6.37 -105.15 -0.67 -2.52 16 23 C -0.21 -2.41 11.09 -37.64 -0.42 -2.83 16 24 C 0.04 0.47 11.82 -16.71 -0.20 0.28 16 25 N -0.58 -8.03 5.87 -10.45 -0.06 -8.09 16 26 H 0.43 5.75 7.54 -40.82 -0.31 5.45 16 27 C 0.15 2.43 6.87 -83.76 -0.58 1.85 16 28 C -0.13 -2.07 0.78 -154.71 -0.12 -2.19 16 29 C -0.11 -1.41 7.84 -26.28 -0.21 -1.61 16 30 C -0.13 -1.81 8.08 -25.75 -0.21 -2.02 16 31 C -0.13 -1.98 7.23 -26.28 -0.19 -2.17 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.38 8.89 5.17 -40.82 -0.21 8.68 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.41 7.54 4.17 -40.82 -0.17 7.37 16 37 H 0.14 2.35 6.38 -52.49 -0.33 2.02 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -29.93 380.97 -10.96 -40.89 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -6.42 Total: 23.61 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -5.48 Total: -13.73 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.15 Total: -61.97 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.93 -10.96 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078728939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.446 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds