Wall clock time and date at job start Tue Mar 31 2020 22:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99717 * 2 1 4 4 H 1.48503 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47292 * 299.99837 * 3 2 1 6 6 H 1.48502 * 109.47137 * 60.00352 * 3 2 1 7 7 C 1.38805 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.88498 * 333.15762 * 10 9 7 12 12 C 1.53946 * 113.66220 * 104.50139 * 10 9 7 13 13 C 1.53960 * 87.29479 * 89.83050 * 12 10 9 14 14 H 1.09000 * 113.66096 * 139.29500 * 13 12 10 15 15 N 1.46497 * 113.65773 * 270.26446 * 13 12 10 16 16 C 1.34777 * 119.99564 * 255.48890 * 15 13 12 17 17 O 1.21597 * 120.00339 * 0.02562 * 16 15 13 18 18 C 1.47500 * 120.00054 * 180.02562 * 16 15 13 19 19 C 1.39353 * 120.20931 * 359.97438 * 18 16 15 20 20 C 1.38312 * 120.49914 * 179.97438 * 19 18 16 21 21 C 1.37918 * 120.59399 * 359.62767 * 20 19 18 22 22 C 1.39543 * 119.98653 * 0.60731 * 21 20 19 23 23 C 1.46568 * 133.95956 * 179.25793 * 22 21 20 24 24 C 1.34205 * 106.89528 * 180.02562 * 23 22 21 25 25 N 1.36913 * 109.88211 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.01339 * 179.97438 * 25 24 23 27 27 C 1.37126 * 109.96696 * 0.27076 * 25 24 23 28 28 C 1.52910 * 113.74612 * 201.73425 * 10 9 7 29 29 C 1.52905 * 121.13722 * 36.13929 * 28 10 9 30 30 C 1.53952 * 86.78500 * 100.81496 * 29 28 10 31 31 C 1.52911 * 121.13557 * 144.69790 * 28 10 9 32 32 H 0.97008 * 119.99904 * 359.97438 * 1 2 3 33 33 H 0.97001 * 119.99538 * 359.97438 * 9 7 2 34 34 H 1.08996 * 113.58311 * 335.22510 * 12 10 9 35 35 H 1.09002 * 113.64959 * 204.44316 * 12 10 9 36 36 H 0.96993 * 120.00360 * 75.49457 * 15 13 12 37 37 H 1.08000 * 119.74425 * 0.02562 * 19 18 16 38 38 H 1.08003 * 119.70776 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.00437 * 179.87163 * 21 20 19 40 40 H 1.07999 * 126.55382 * 0.02731 * 23 22 21 41 41 H 1.08004 * 125.06450 * 179.97438 * 24 23 22 42 42 H 1.09000 * 113.66204 * 215.29183 * 29 28 10 43 43 H 1.09001 * 113.66099 * 346.34130 * 29 28 10 44 44 H 1.08993 * 113.57814 * 270.13275 * 30 29 28 45 45 H 1.08997 * 113.64939 * 139.34950 * 30 29 28 46 46 H 1.08997 * 113.65712 * 13.65372 * 31 28 10 47 47 H 1.08997 * 113.66167 * 144.70740 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0463 -3.5757 -0.4543 12 6 2.0601 -4.3690 1.3632 13 6 0.7684 -5.0763 0.9141 14 1 0.7259 -6.1288 1.1944 15 7 -0.4529 -4.3447 1.2595 16 6 -1.2218 -4.7629 2.2844 17 8 -0.9016 -5.7471 2.9226 18 6 -2.4518 -4.0268 2.6319 19 6 -2.8227 -2.8980 1.9037 20 6 -3.9752 -2.2035 2.2240 21 6 -4.7799 -2.6204 3.2636 22 6 -4.4273 -3.7449 4.0108 23 6 -5.0278 -4.4344 5.1564 24 6 -4.2292 -5.4726 5.4490 25 7 -3.1685 -5.5025 4.5838 26 1 -2.4571 -6.1617 4.5982 27 6 -3.2570 -4.4593 3.6983 28 6 1.2403 -4.8399 -0.5211 29 6 0.2396 -4.6682 -1.6643 30 6 1.3177 -5.2712 -2.5831 31 6 1.8954 -5.9583 -1.3323 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3880 -0.0016 34 1 1.9170 -3.6945 2.2073 35 1 2.9027 -5.0465 1.5015 36 1 -0.7082 -3.5595 0.7506 37 1 -2.2061 -2.5635 1.0826 38 1 -4.2507 -1.3305 1.6509 39 1 -5.6766 -2.0697 3.5068 40 1 -5.9387 -4.1597 5.6673 41 1 -4.3981 -6.1793 6.2481 42 1 -0.6491 -5.2913 -1.5650 43 1 0.0060 -3.6274 -1.8886 44 1 1.9845 -4.5276 -3.0193 45 1 0.9227 -5.9695 -3.3209 46 1 2.9846 -5.9481 -1.2914 47 1 1.4721 -6.9440 -1.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078728942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:12 Heat of formation + Delta-G solvation = 82.547277 kcal Electronic energy + Delta-G solvation = -29844.069780 eV Core-core repulsion = 25993.881527 eV Total energy + Delta-G solvation = -3850.188253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27492 -40.53745 -38.59787 -36.60251 -35.25420 -33.68082 -32.48271 -31.61398 -29.91896 -29.31616 -28.59038 -25.51296 -24.89706 -24.17185 -23.75807 -22.36220 -21.63682 -20.98922 -20.37293 -19.89018 -18.52324 -17.49803 -17.02142 -16.82167 -15.98416 -15.72231 -15.18382 -14.99660 -14.85828 -14.54588 -14.33826 -14.09794 -13.85778 -13.70141 -13.24831 -13.05368 -12.94368 -12.60751 -12.42381 -12.12505 -11.90321 -11.65788 -11.53453 -11.45977 -11.36465 -11.23004 -10.95259 -10.88517 -10.71183 -10.18507 -10.09843 -9.85740 -9.74021 -9.65377 -9.52253 -9.42338 -8.91278 -8.52375 -8.13298 -7.65810 -7.08493 -5.89666 -3.17684 0.85990 1.78184 2.59005 3.26450 3.29259 3.37937 3.43337 3.45892 3.47175 4.13609 4.46839 4.74537 4.75024 4.85562 4.98884 5.03323 5.11512 5.16276 5.19090 5.30647 5.33615 5.40620 5.51586 5.59930 5.65251 5.82642 5.86372 5.91136 5.96089 5.98408 5.98806 6.01733 6.08961 6.14760 6.26166 6.34558 6.47035 6.49373 6.60883 6.68211 6.69378 6.74583 6.78338 6.80485 6.93433 7.09763 7.22311 7.63547 7.64516 7.91445 8.29917 8.53341 9.41020 9.94376 10.28580 11.33333 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.004214 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.073689 B = 6642.950837 C = 8583.650535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.191 3.809 11 H 0.065 0.935 12 C -0.186 4.186 13 C 0.138 3.862 14 H 0.089 0.911 15 N -0.689 5.689 16 C 0.566 3.434 17 O -0.568 6.568 18 C -0.153 4.153 19 C -0.044 4.044 20 C -0.152 4.152 21 C -0.046 4.046 22 C -0.128 4.128 23 C -0.205 4.205 24 C 0.043 3.957 25 N -0.580 5.580 26 H 0.425 0.575 27 C 0.151 3.849 28 C -0.128 4.128 29 C -0.128 4.128 30 C -0.134 4.134 31 C -0.106 4.106 32 H 0.257 0.743 33 H 0.379 0.621 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.407 0.593 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 -11.205 3.742 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.079 3.921 11 H 0.083 0.917 12 C -0.228 4.228 13 C 0.033 3.967 14 H 0.107 0.893 15 N -0.340 5.340 16 C 0.355 3.645 17 O -0.450 6.450 18 C -0.159 4.159 19 C -0.063 4.063 20 C -0.171 4.171 21 C -0.065 4.065 22 C -0.132 4.132 23 C -0.230 4.230 24 C -0.083 4.083 25 N -0.183 5.183 26 H 0.265 0.735 27 C 0.040 3.960 28 C -0.130 4.130 29 C -0.165 4.165 30 C -0.171 4.171 31 C -0.144 4.144 32 H 0.066 0.934 33 H 0.214 0.786 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.186 0.814 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.025 -11.815 4.185 14.368 hybrid contribution 0.353 1.082 -0.041 1.139 sum -6.672 -10.733 4.144 13.299 Atomic orbital electron populations 1.69608 1.05048 1.25868 1.57425 1.24698 0.95573 0.97655 1.02489 0.86107 0.78850 0.83953 0.77181 1.20568 1.21825 1.21833 1.19297 0.91212 0.83667 1.43114 0.90858 1.42093 1.05239 0.99378 1.87214 1.20870 0.94367 0.84670 0.92180 0.91698 1.24280 0.96309 1.00219 1.01977 1.21632 0.84161 0.95648 0.95250 0.89261 1.45607 1.23865 1.31457 1.33075 1.18136 0.82870 0.83555 0.79899 1.90617 1.73869 1.27900 1.52588 1.18935 0.97195 1.00293 0.99479 1.21296 0.95865 0.91686 0.97488 1.20871 0.95587 1.01352 0.99294 1.20700 0.98580 0.93732 0.93461 1.19188 0.96257 0.98351 0.99446 1.21637 1.02538 0.98540 1.00295 1.21870 0.89220 1.00791 0.96459 1.41955 1.23623 1.25843 1.26913 0.73531 1.17937 0.95769 0.89967 0.92357 1.23523 0.98749 0.98771 0.91977 1.22591 0.96266 1.02088 0.95593 1.22744 0.98815 0.99646 0.95897 1.22511 0.99970 0.96523 0.95425 0.93355 0.78594 0.90959 0.90517 0.75337 0.84382 0.85038 0.85762 0.83642 0.81400 0.90897 0.90167 0.90039 0.92155 0.91323 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.75 13.06 55.49 0.72 -25.02 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.32 9.98 -15.06 -0.15 -6.47 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.70 -16.09 4.77 -52.99 -0.25 -16.34 16 10 C 0.19 3.65 4.35 -67.49 -0.29 3.35 16 11 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 12 C -0.19 -3.35 7.68 -25.75 -0.20 -3.55 16 13 C 0.14 2.37 4.08 -67.47 -0.28 2.09 16 14 H 0.09 1.53 7.54 -51.93 -0.39 1.14 16 15 N -0.69 -12.30 4.88 -54.41 -0.27 -12.57 16 16 C 0.57 10.44 7.76 -12.49 -0.10 10.34 16 17 O -0.57 -11.14 14.80 5.28 0.08 -11.06 16 18 C -0.15 -2.64 5.88 -104.87 -0.62 -3.26 16 19 C -0.04 -0.71 9.52 -39.14 -0.37 -1.08 16 20 C -0.15 -2.19 10.00 -39.67 -0.40 -2.59 16 21 C -0.05 -0.62 10.09 -39.21 -0.40 -1.01 16 22 C -0.13 -1.86 6.37 -105.15 -0.67 -2.53 16 23 C -0.20 -2.42 11.09 -37.65 -0.42 -2.84 16 24 C 0.04 0.48 11.82 -16.70 -0.20 0.28 16 25 N -0.58 -8.06 5.87 -10.45 -0.06 -8.12 16 26 H 0.43 5.78 7.54 -40.82 -0.31 5.47 16 27 C 0.15 2.44 6.87 -83.76 -0.58 1.86 16 28 C -0.13 -2.03 0.77 -154.71 -0.12 -2.15 16 29 C -0.13 -1.98 7.18 -26.28 -0.19 -2.16 16 30 C -0.13 -1.80 8.08 -25.75 -0.21 -2.01 16 31 C -0.11 -1.40 7.84 -26.28 -0.21 -1.60 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.38 8.90 5.13 -40.82 -0.21 8.69 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.41 7.52 4.22 -40.82 -0.17 7.35 16 37 H 0.14 2.34 6.37 -52.49 -0.33 2.01 16 38 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.43 7.51 -51.93 -0.39 1.04 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -30.02 380.91 -10.96 -40.97 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -6.42 Total: 23.51 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -5.47 Total: -13.64 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.15 Total: -62.05 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.02 -10.96 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078728942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.522 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds