Wall clock time and date at job start Tue Mar 31 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99717 * 2 1 4 4 H 1.48503 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47292 * 299.99837 * 3 2 1 6 6 H 1.48502 * 109.47137 * 60.00352 * 3 2 1 7 7 C 1.38805 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.88498 * 333.15762 * 10 9 7 12 12 C 1.53946 * 113.66220 * 104.50139 * 10 9 7 13 13 C 1.53960 * 87.29479 * 89.83050 * 12 10 9 14 14 H 1.09000 * 113.66096 * 139.29500 * 13 12 10 15 15 N 1.46497 * 113.65773 * 270.26446 * 13 12 10 16 16 C 1.34777 * 119.99564 * 255.48890 * 15 13 12 17 17 O 1.21597 * 120.00339 * 0.02562 * 16 15 13 18 18 C 1.47500 * 120.00054 * 180.02562 * 16 15 13 19 19 C 1.39353 * 120.20931 * 359.97438 * 18 16 15 20 20 C 1.38312 * 120.49914 * 179.97438 * 19 18 16 21 21 C 1.37918 * 120.59399 * 359.62767 * 20 19 18 22 22 C 1.39543 * 119.98653 * 0.60731 * 21 20 19 23 23 C 1.46568 * 133.95956 * 179.25793 * 22 21 20 24 24 C 1.34205 * 106.89528 * 180.02562 * 23 22 21 25 25 N 1.36913 * 109.88211 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.01339 * 179.97438 * 25 24 23 27 27 C 1.37126 * 109.96696 * 0.27076 * 25 24 23 28 28 C 1.52910 * 113.74612 * 201.73425 * 10 9 7 29 29 C 1.52905 * 121.13722 * 36.13929 * 28 10 9 30 30 C 1.53952 * 86.78500 * 100.81496 * 29 28 10 31 31 C 1.52911 * 121.13557 * 144.69790 * 28 10 9 32 32 H 0.97008 * 119.99904 * 359.97438 * 1 2 3 33 33 H 0.97001 * 119.99538 * 359.97438 * 9 7 2 34 34 H 1.08996 * 113.58311 * 335.22510 * 12 10 9 35 35 H 1.09002 * 113.64959 * 204.44316 * 12 10 9 36 36 H 0.96993 * 120.00360 * 75.49457 * 15 13 12 37 37 H 1.08000 * 119.74425 * 0.02562 * 19 18 16 38 38 H 1.08003 * 119.70776 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.00437 * 179.87163 * 21 20 19 40 40 H 1.07999 * 126.55382 * 0.02731 * 23 22 21 41 41 H 1.08004 * 125.06450 * 179.97438 * 24 23 22 42 42 H 1.09000 * 113.66204 * 215.29183 * 29 28 10 43 43 H 1.09001 * 113.66099 * 346.34130 * 29 28 10 44 44 H 1.08993 * 113.57814 * 270.13275 * 30 29 28 45 45 H 1.08997 * 113.64939 * 139.34950 * 30 29 28 46 46 H 1.08997 * 113.65712 * 13.65372 * 31 28 10 47 47 H 1.08997 * 113.66167 * 144.70740 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0463 -3.5757 -0.4543 12 6 2.0601 -4.3690 1.3632 13 6 0.7684 -5.0763 0.9141 14 1 0.7259 -6.1288 1.1944 15 7 -0.4529 -4.3447 1.2595 16 6 -1.2218 -4.7629 2.2844 17 8 -0.9016 -5.7471 2.9226 18 6 -2.4518 -4.0268 2.6319 19 6 -2.8227 -2.8980 1.9037 20 6 -3.9752 -2.2035 2.2240 21 6 -4.7799 -2.6204 3.2636 22 6 -4.4273 -3.7449 4.0108 23 6 -5.0278 -4.4344 5.1564 24 6 -4.2292 -5.4726 5.4490 25 7 -3.1685 -5.5025 4.5838 26 1 -2.4571 -6.1617 4.5982 27 6 -3.2570 -4.4593 3.6983 28 6 1.2403 -4.8399 -0.5211 29 6 0.2396 -4.6682 -1.6643 30 6 1.3177 -5.2712 -2.5831 31 6 1.8954 -5.9583 -1.3323 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3880 -0.0016 34 1 1.9170 -3.6945 2.2073 35 1 2.9027 -5.0465 1.5015 36 1 -0.7082 -3.5595 0.7506 37 1 -2.2061 -2.5635 1.0826 38 1 -4.2507 -1.3305 1.6509 39 1 -5.6766 -2.0697 3.5068 40 1 -5.9387 -4.1597 5.6673 41 1 -4.3981 -6.1793 6.2481 42 1 -0.6491 -5.2913 -1.5650 43 1 0.0060 -3.6274 -1.8886 44 1 1.9845 -4.5276 -3.0193 45 1 0.9227 -5.9695 -3.3209 46 1 2.9846 -5.9481 -1.2914 47 1 1.4721 -6.9440 -1.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078728942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:11 Heat of formation + Delta-G solvation = 66.051703 kcal Electronic energy + Delta-G solvation = -29844.785081 eV Core-core repulsion = 25993.881527 eV Total energy + Delta-G solvation = -3850.903555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40711 -41.85441 -39.94787 -37.74113 -36.66831 -35.41585 -33.96598 -32.85145 -31.68967 -30.44453 -29.65669 -26.80196 -26.51348 -25.53000 -25.13606 -23.84209 -22.78642 -22.17132 -21.53816 -21.21409 -19.92644 -19.03173 -18.48293 -18.10092 -17.16517 -16.99815 -16.68661 -16.32726 -16.22959 -16.06885 -15.64107 -15.44368 -15.12563 -14.93028 -14.85166 -14.62790 -13.95885 -13.88651 -13.52168 -13.45911 -13.26885 -13.11898 -12.85189 -12.78162 -12.72208 -12.58776 -12.55302 -12.35680 -12.12793 -11.96119 -11.83271 -11.32177 -11.20839 -10.96938 -10.85088 -10.75611 -10.66107 -9.93621 -9.24601 -8.99458 -8.70917 -7.94528 -5.21620 -0.30852 0.62330 1.47423 1.49084 1.53073 1.57293 2.03551 2.10646 2.28518 2.55621 2.93444 3.37213 3.38120 3.56238 3.69353 3.78178 3.82632 3.94450 4.00360 4.02546 4.09325 4.17351 4.24957 4.32021 4.42719 4.55061 4.64161 4.65222 4.77073 4.84095 4.86164 4.89556 4.93448 4.98272 5.02871 5.09735 5.12479 5.18585 5.23279 5.34913 5.51696 5.54873 5.56581 5.60142 5.66715 5.73071 5.79770 6.14741 6.28769 6.45025 6.64972 7.09480 7.35583 8.06968 8.31780 9.28403 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.004214 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.073689 B = 6642.950837 C = 8583.650535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.062 4.062 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.709 5.709 10 C 0.178 3.822 11 H 0.065 0.935 12 C -0.179 4.179 13 C 0.138 3.862 14 H 0.095 0.905 15 N -0.691 5.691 16 C 0.560 3.440 17 O -0.586 6.586 18 C -0.177 4.177 19 C -0.057 4.057 20 C -0.163 4.163 21 C -0.035 4.035 22 C -0.142 4.142 23 C -0.209 4.209 24 C 0.051 3.949 25 N -0.586 5.586 26 H 0.423 0.577 27 C 0.123 3.877 28 C -0.119 4.119 29 C -0.130 4.130 30 C -0.125 4.125 31 C -0.092 4.092 32 H 0.252 0.748 33 H 0.374 0.626 34 H 0.038 0.962 35 H 0.104 0.896 36 H 0.403 0.597 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.178 0.822 41 H 0.213 0.787 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.138 -12.653 4.416 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.255 4.255 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.067 3.933 11 H 0.083 0.917 12 C -0.221 4.221 13 C 0.032 3.968 14 H 0.112 0.888 15 N -0.340 5.340 16 C 0.351 3.649 17 O -0.469 6.469 18 C -0.183 4.183 19 C -0.077 4.077 20 C -0.182 4.182 21 C -0.054 4.054 22 C -0.147 4.147 23 C -0.233 4.233 24 C -0.074 4.074 25 N -0.189 5.189 26 H 0.262 0.738 27 C 0.011 3.989 28 C -0.121 4.121 29 C -0.168 4.168 30 C -0.163 4.163 31 C -0.130 4.130 32 H 0.061 0.939 33 H 0.208 0.792 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.241 0.759 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.177 0.823 40 H 0.195 0.805 41 H 0.229 0.771 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.662 -13.297 4.857 16.097 hybrid contribution 0.532 1.482 -0.179 1.585 sum -7.131 -11.815 4.677 14.571 Atomic orbital electron populations 1.69737 1.06052 1.26011 1.58871 1.25368 0.96377 1.00334 1.03426 0.85201 0.78245 0.80545 0.76483 1.19577 1.21978 1.22518 1.19593 0.91426 0.84962 1.41665 0.90877 1.42173 1.05140 1.00118 1.87408 1.21060 0.94582 0.84310 0.93338 0.91710 1.24223 0.98051 1.00025 0.99789 1.21702 0.83433 0.95520 0.96107 0.88751 1.45670 1.24106 1.31280 1.32966 1.18450 0.83336 0.83483 0.79662 1.90577 1.74508 1.28661 1.53153 1.18940 0.97397 1.01033 1.00953 1.21241 0.96763 0.92263 0.97444 1.21078 0.95203 1.01753 1.00153 1.21078 0.99025 0.93186 0.92065 1.19686 0.95987 0.98569 1.00454 1.22063 1.03677 0.98203 0.99393 1.22659 0.87506 1.01099 0.96183 1.42133 1.24411 1.25299 1.27075 0.73751 1.18190 0.96526 0.91313 0.92825 1.23422 0.98679 0.98393 0.91604 1.22593 0.97237 1.00646 0.96320 1.22702 0.97545 0.99664 0.96355 1.22545 1.00779 0.96154 0.93511 0.93851 0.79207 0.94314 0.87793 0.75888 0.86217 0.83672 0.82272 0.80467 0.77069 0.89946 0.93268 0.90928 0.89696 0.89940 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.79 13.06 21.65 0.28 -54.51 16 2 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 3 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.24 -13.10 9.98 84.03 0.84 -12.26 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.71 -33.84 4.77 -321.57 -1.53 -35.37 16 10 C 0.18 6.86 4.35 45.28 0.20 7.06 16 11 H 0.06 2.48 8.12 -2.38 -0.02 2.46 16 12 C -0.18 -6.54 7.68 31.23 0.24 -6.30 16 13 C 0.14 4.75 4.08 45.29 0.18 4.93 16 14 H 0.09 3.18 7.54 -2.39 -0.02 3.16 16 15 N -0.69 -25.90 4.88 -444.33 -2.17 -28.07 16 16 C 0.56 21.66 7.76 86.68 0.67 22.34 16 17 O -0.59 -23.64 14.80 -4.02 -0.06 -23.70 16 18 C -0.18 -6.42 5.88 -20.03 -0.12 -6.53 16 19 C -0.06 -1.99 9.52 22.56 0.21 -1.78 16 20 C -0.16 -4.77 10.00 22.21 0.22 -4.55 16 21 C -0.04 -0.90 10.09 22.51 0.23 -0.67 16 22 C -0.14 -3.96 6.37 -20.20 -0.13 -4.09 16 23 C -0.21 -4.34 11.09 23.52 0.26 -4.08 16 24 C 0.05 0.98 11.82 82.98 0.98 1.96 16 25 N -0.59 -15.87 5.87 -186.97 -1.10 -16.97 16 26 H 0.42 11.46 7.54 -92.71 -0.70 10.76 16 27 C 0.12 4.00 6.87 39.44 0.27 4.28 16 28 C -0.12 -3.73 0.77 -52.31 -0.04 -3.77 16 29 C -0.13 -4.02 7.18 30.88 0.22 -3.79 16 30 C -0.13 -3.14 8.08 31.23 0.25 -2.88 16 31 C -0.09 -2.18 7.84 30.89 0.24 -1.94 16 32 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 33 H 0.37 18.53 5.13 -92.71 -0.48 18.06 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.40 15.99 4.22 -92.71 -0.39 15.60 16 37 H 0.12 4.50 6.37 -2.91 -0.02 4.48 16 38 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 39 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.05 1.83 7.51 -2.39 -0.02 1.81 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.33 380.91 2.12 -65.21 By element: Atomic # 1 Polarization: 61.79 SS G_CDS: -0.54 Total: 61.25 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 5.21 Total: -15.00 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -4.51 Total: -134.93 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.06 Total: -23.70 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.33 2.12 -65.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078728942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.263 kcal (2) G-P(sol) polarization free energy of solvation -67.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds