Wall clock time and date at job start Tue Mar 31 2020 23:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48492 * 109.47352 * 270.00970 * 3 2 1 5 5 H 1.48506 * 109.46668 * 30.00530 * 3 2 1 6 6 H 1.48496 * 109.47310 * 150.00245 * 3 2 1 7 7 C 1.38809 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00442 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00358 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.88573 * 23.65931 * 10 9 7 12 12 C 1.53946 * 113.66666 * 252.18812 * 10 9 7 13 13 C 1.53958 * 87.29612 * 220.79618 * 12 10 9 14 14 H 1.08994 * 113.65977 * 270.26062 * 13 12 10 15 15 N 1.46498 * 113.66040 * 139.20611 * 13 12 10 16 16 C 1.34771 * 120.00252 * 107.81515 * 15 13 12 17 17 O 1.21647 * 120.00110 * 359.97438 * 16 15 13 18 18 C 1.47056 * 120.00237 * 179.97438 * 16 15 13 19 19 C 1.35864 * 125.43180 * 179.97438 * 18 16 15 20 20 C 1.41590 * 107.72520 * 179.97438 * 19 18 16 21 21 C 1.40111 * 133.37574 * 180.02562 * 20 19 18 22 22 C 1.36441 * 119.82782 * 179.97438 * 21 20 19 23 23 C 1.38941 * 120.61639 * 359.97438 * 22 21 20 24 24 C 1.37674 * 120.64862 * 0.02562 * 23 22 21 25 25 C 1.39230 * 119.81037 * 0.02562 * 24 23 22 26 26 N 1.37474 * 133.18257 * 180.34557 * 25 24 23 27 27 H 0.97004 * 125.60187 * 359.92805 * 26 25 24 28 28 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 29 29 C 1.52909 * 121.13536 * 209.38733 * 28 13 12 30 30 C 1.53952 * 86.78252 * 209.38099 * 29 28 13 31 31 C 1.53064 * 121.17777 * 100.75092 * 28 13 12 32 32 H 0.97003 * 120.00028 * 359.97438 * 1 2 3 33 33 H 0.97002 * 119.99745 * 359.97438 * 9 7 2 34 34 H 1.09000 * 113.57626 * 335.39826 * 12 10 9 35 35 H 1.08997 * 113.57982 * 106.19073 * 12 10 9 36 36 H 0.97006 * 119.99739 * 287.80421 * 15 13 12 37 37 H 1.07998 * 126.13791 * 0.02562 * 19 18 16 38 38 H 1.07996 * 120.08675 * 359.95385 * 21 20 19 39 39 H 1.07999 * 119.69368 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.67938 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.09640 * 180.02562 * 24 23 22 42 42 H 1.09000 * 113.66588 * 94.90895 * 29 28 13 43 43 H 1.09002 * 113.66049 * 323.84790 * 29 28 13 44 44 H 1.09002 * 113.58142 * 139.33437 * 30 29 28 45 45 H 1.09004 * 113.57653 * 270.05037 * 30 29 28 46 46 H 1.09006 * 113.66264 * 36.13819 * 31 28 13 47 47 H 1.09001 * 113.71778 * 265.03884 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0669 -3.5642 0.4006 12 6 1.9925 -4.4070 -1.3444 13 6 1.8246 -5.7022 -0.5292 14 1 2.7684 -6.1854 -0.2765 15 7 0.8415 -6.6296 -1.0947 16 6 1.2523 -7.7672 -1.6891 17 8 2.4395 -8.0238 -1.7566 18 6 0.2654 -8.6983 -2.2563 19 6 0.5555 -9.8711 -2.8778 20 6 -0.6682 -10.4632 -3.2738 21 6 -0.9902 -11.6526 -3.9407 22 6 -2.2965 -11.9606 -4.1864 23 6 -3.3136 -11.1052 -3.7809 24 6 -3.0227 -9.9308 -3.1240 25 6 -1.6973 -9.5939 -2.8626 26 7 -1.1047 -8.5225 -2.2373 27 1 -1.5718 -7.7669 -1.8478 28 6 1.2661 -4.8232 0.5904 29 6 1.4214 -5.2197 2.0590 30 6 0.1051 -4.4625 2.3126 31 6 -0.2411 -4.7120 0.8334 32 1 -0.4850 0.8401 0.0004 33 1 0.3556 -2.3881 0.0002 34 1 1.1183 -4.1526 -1.9436 35 1 2.9219 -4.3666 -1.9123 36 1 -0.1052 -6.4248 -1.0410 37 1 1.5423 -10.2790 -3.0399 38 1 -0.2065 -12.3238 -4.2596 39 1 -2.5423 -12.8782 -4.7002 40 1 -4.3424 -11.3642 -3.9829 41 1 -3.8203 -9.2726 -2.8124 42 1 2.2863 -4.7683 2.5449 43 1 1.3487 -6.2934 2.2322 44 1 -0.5629 -4.9702 3.0084 45 1 0.2477 -3.4095 2.5554 46 1 -0.7818 -5.6428 0.6616 47 1 -0.7024 -3.8556 0.3416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078803613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:18 Heat of formation + Delta-G solvation = 79.625727 kcal Electronic energy + Delta-G solvation = -28608.895665 eV Core-core repulsion = 24758.580724 eV Total energy + Delta-G solvation = -3850.314941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81796 -40.59060 -38.89799 -36.98320 -34.97492 -34.24726 -32.65431 -32.35192 -30.18788 -29.59110 -29.14117 -25.59589 -25.27957 -24.22661 -23.85496 -22.46284 -22.06795 -21.19610 -20.55753 -20.16921 -18.78500 -17.93459 -17.41228 -16.95319 -16.37266 -15.90529 -15.44968 -15.27679 -15.05315 -14.70275 -14.45755 -14.23281 -14.20133 -14.02115 -13.73027 -13.16582 -13.06748 -12.83574 -12.59942 -12.17508 -12.01808 -11.97643 -11.84924 -11.58712 -11.29438 -11.21088 -10.97803 -10.87118 -10.78439 -10.30316 -10.20832 -10.16254 -10.11131 -9.98685 -9.77505 -9.51998 -8.91625 -8.83695 -8.50779 -8.04639 -7.04068 -5.85979 -3.14501 0.52777 1.34169 1.91212 2.63670 3.04661 3.22464 3.38798 3.44878 3.45655 3.63366 4.39071 4.50593 4.56133 4.71202 4.73084 4.83294 4.84732 4.97807 5.03192 5.12965 5.14867 5.18030 5.25435 5.37163 5.44147 5.60818 5.69045 5.75248 5.79543 5.80620 5.89709 5.92411 5.99655 6.11951 6.15167 6.20955 6.26594 6.31205 6.34490 6.41459 6.43017 6.46954 6.52876 6.77093 6.79628 6.83879 6.97719 7.08385 7.45689 7.64271 8.05996 8.32801 9.44698 10.00333 10.35229 11.36278 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.002303 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.761676 B =12157.272439 C =12386.619104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.193 3.807 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.114 0.886 15 N -0.706 5.706 16 C 0.580 3.420 17 O -0.525 6.525 18 C 0.022 3.978 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.061 4.061 22 C -0.151 4.151 23 C -0.090 4.090 24 C -0.132 4.132 25 C 0.112 3.888 26 N -0.578 5.578 27 H 0.418 0.582 28 C -0.120 4.120 29 C -0.126 4.126 30 C -0.129 4.129 31 C -0.118 4.118 32 H 0.256 0.744 33 H 0.386 0.614 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 -22.454 -3.725 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.080 3.920 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.026 3.974 14 H 0.132 0.868 15 N -0.356 5.356 16 C 0.366 3.634 17 O -0.401 6.401 18 C -0.088 4.088 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.080 4.080 22 C -0.170 4.170 23 C -0.110 4.110 24 C -0.153 4.153 25 C 0.002 3.998 26 N -0.182 5.182 27 H 0.256 0.744 28 C -0.122 4.122 29 C -0.163 4.163 30 C -0.166 4.166 31 C -0.155 4.155 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.173 0.827 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.236 -22.261 -3.649 23.158 hybrid contribution -0.707 1.421 0.098 1.590 sum -5.943 -20.841 -3.551 21.960 Atomic orbital electron populations 1.69646 1.05125 1.25804 1.57462 1.24742 0.95519 0.97762 1.02701 0.86191 0.78708 0.83740 0.77558 1.21693 1.21789 1.20686 1.19299 0.91142 0.84061 1.42958 0.91007 1.42340 1.05790 0.99472 1.86758 1.21052 0.94821 0.84342 0.91770 0.89886 1.24296 1.01954 0.95048 1.00344 1.22395 0.92398 0.87585 0.95041 0.86797 1.45907 1.10568 1.20959 1.58144 1.17228 0.87360 0.80613 0.78221 1.90840 1.15796 1.75281 1.58155 1.20303 0.82146 0.98922 1.07393 1.20912 0.98198 0.93736 1.00906 1.18228 0.92603 0.96739 1.04825 1.20419 0.96668 0.94528 0.96357 1.20638 0.92554 1.00569 1.03246 1.20878 0.99381 0.93381 0.97341 1.20101 0.92432 0.98919 1.03799 1.18347 0.94259 0.88820 0.98408 1.41975 1.05264 1.20514 1.50483 0.74393 1.23669 0.97255 0.98062 0.93249 1.22705 0.98630 0.99240 0.95767 1.22721 0.96663 1.01656 0.95598 1.22454 0.94454 1.00919 0.97707 0.93447 0.77813 0.90214 0.91863 0.77140 0.82650 0.85743 0.85915 0.85590 0.85935 0.91321 0.91012 0.92523 0.89022 0.91527 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -16.40 5.32 -52.99 -0.28 -16.68 16 10 C 0.19 3.60 4.36 -67.48 -0.29 3.31 16 11 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 12 C -0.17 -2.96 7.68 -25.75 -0.20 -3.16 16 13 C 0.13 1.91 4.12 -67.48 -0.28 1.63 16 14 H 0.11 1.76 7.46 -51.93 -0.39 1.37 16 15 N -0.71 -8.98 5.25 -54.56 -0.29 -9.27 16 16 C 0.58 8.12 7.80 -12.69 -0.10 8.02 16 17 O -0.52 -9.03 16.44 5.24 0.09 -8.95 16 18 C 0.02 0.26 6.97 -82.30 -0.57 -0.31 16 19 C -0.11 -1.31 10.53 -39.16 -0.41 -1.73 16 20 C -0.12 -1.31 6.16 -106.93 -0.66 -1.97 16 21 C -0.06 -0.55 10.06 -39.53 -0.40 -0.95 16 22 C -0.15 -1.17 9.97 -39.97 -0.40 -1.56 16 23 C -0.09 -0.68 10.01 -39.53 -0.40 -1.08 16 24 C -0.13 -1.13 10.08 -39.42 -0.40 -1.52 16 25 C 0.11 1.16 7.25 -83.98 -0.61 0.55 16 26 N -0.58 -5.70 6.07 -7.36 -0.04 -5.74 16 27 H 0.42 3.09 8.12 -40.82 -0.33 2.76 16 28 C -0.12 -1.80 1.07 -154.63 -0.16 -1.97 16 29 C -0.13 -1.76 7.84 -26.28 -0.21 -1.97 16 30 C -0.13 -1.88 8.08 -25.75 -0.21 -2.09 16 31 C -0.12 -1.67 6.79 -26.20 -0.18 -1.85 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.39 9.43 5.91 -40.82 -0.24 9.19 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.39 4.19 6.09 -40.82 -0.25 3.94 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 46 H 0.07 0.77 7.03 -51.93 -0.37 0.40 16 47 H 0.08 1.33 6.41 -51.93 -0.33 0.99 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -31.26 385.67 -11.25 -42.52 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -6.52 Total: 15.41 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -5.71 Total: -13.64 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.11 Total: -57.97 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.26 -11.25 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078803613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.142 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds