Wall clock time and date at job start Tue Mar 31 2020 23:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00354 * 2 1 4 4 H 1.48500 * 109.47339 * 270.00633 * 3 2 1 5 5 H 1.48504 * 109.46955 * 30.00517 * 3 2 1 6 6 H 1.48503 * 109.47257 * 150.00497 * 3 2 1 7 7 C 1.38816 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99831 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.88856 * 23.65605 * 10 9 7 12 12 C 1.54145 * 113.66412 * 252.22174 * 10 9 7 13 13 C 1.53947 * 87.22491 * 270.17455 * 12 10 9 14 14 H 1.09002 * 113.66698 * 89.86882 * 13 12 10 15 15 N 1.46500 * 113.65955 * 220.82509 * 13 12 10 16 16 C 1.34782 * 120.00221 * 253.98308 * 15 13 12 17 17 O 1.21646 * 119.99487 * 0.02562 * 16 15 13 18 18 C 1.47060 * 120.00258 * 179.97438 * 16 15 13 19 19 C 1.35861 * 125.42997 * 180.02562 * 18 16 15 20 20 C 1.41592 * 107.72401 * 179.97438 * 19 18 16 21 21 C 1.40106 * 133.37179 * 180.02562 * 20 19 18 22 22 C 1.36439 * 119.82429 * 180.27830 * 21 20 19 23 23 C 1.38933 * 120.61530 * 359.43541 * 22 21 20 24 24 C 1.37669 * 120.65058 * 0.56854 * 23 22 21 25 25 C 1.39227 * 119.81278 * 359.71959 * 24 23 22 26 26 N 1.37471 * 133.18861 * 180.02562 * 25 24 23 27 27 H 0.97001 * 125.60621 * 359.97140 * 26 25 24 28 28 C 1.52911 * 86.88781 * 335.34299 * 13 12 10 29 29 C 1.52911 * 121.13619 * 259.13733 * 28 13 12 30 30 C 1.53948 * 86.77846 * 209.37740 * 29 28 13 31 31 C 1.52907 * 121.13772 * 150.57095 * 28 13 12 32 32 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 33 33 H 0.96996 * 119.99805 * 359.97438 * 9 7 2 34 34 H 1.08998 * 113.57882 * 155.60170 * 12 10 9 35 35 H 1.09001 * 113.63132 * 24.75023 * 12 10 9 36 36 H 0.97002 * 120.00186 * 73.98964 * 15 13 12 37 37 H 1.08001 * 126.13679 * 359.96780 * 19 18 16 38 38 H 1.08002 * 120.08405 * 359.97438 * 21 20 19 39 39 H 1.08008 * 119.68866 * 179.69931 * 22 21 20 40 40 H 1.08003 * 119.67297 * 180.26558 * 23 22 21 41 41 H 1.08009 * 120.09435 * 179.69968 * 24 23 22 42 42 H 1.08993 * 113.65950 * 323.85125 * 29 28 13 43 43 H 1.09001 * 113.65593 * 94.90522 * 29 28 13 44 44 H 1.09002 * 113.57762 * 270.12769 * 30 29 28 45 45 H 1.09001 * 113.57917 * 139.34121 * 30 29 28 46 46 H 1.08997 * 113.66468 * 265.09244 * 31 28 13 47 47 H 1.09001 * 113.66071 * 36.15657 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 3.0668 -3.5643 0.4005 12 6 1.9929 -4.4076 -1.3464 13 6 0.7257 -5.1002 -0.8130 14 1 -0.1952 -4.5635 -1.0412 15 7 0.6513 -6.5254 -1.1436 16 6 -0.2025 -6.9529 -2.0950 17 8 -0.9109 -6.1551 -2.6793 18 6 -0.2768 -8.3835 -2.4273 19 6 -1.0937 -8.9332 -3.3634 20 6 -0.8591 -10.3295 -3.3737 21 6 -1.3962 -11.3899 -4.1154 22 6 -0.9620 -12.6637 -3.8905 23 6 0.0179 -12.9197 -2.9395 24 6 0.5611 -11.8947 -2.1980 25 6 0.1303 -10.5870 -2.4049 26 7 0.4730 -9.3827 -1.8375 27 1 1.1327 -9.2554 -1.1378 28 6 1.2659 -4.8232 0.5905 29 6 1.9590 -5.9188 1.4014 30 6 1.4419 -5.1950 2.6579 31 6 0.3211 -4.6169 1.7749 32 1 -0.4850 0.8400 0.0004 33 1 0.3555 -2.3881 0.0002 34 1 2.8282 -5.0894 -1.5059 35 1 1.8073 -3.7573 -2.2013 36 1 1.2164 -7.1616 -0.6778 37 1 -1.7960 -8.4007 -3.9876 38 1 -2.1554 -11.2001 -4.8597 39 1 -1.3811 -13.4801 -4.4601 40 1 0.3534 -13.9333 -2.7770 41 1 1.3190 -12.1046 -1.4577 42 1 1.5267 -6.9089 1.2578 43 1 3.0449 -5.9114 1.3079 44 1 2.1292 -4.4401 3.0401 45 1 1.0814 -5.8711 3.4332 46 1 0.0987 -3.5698 1.9800 47 1 -0.5714 -5.2414 1.7364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078803615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:26 Heat of formation + Delta-G solvation = 80.558999 kcal Electronic energy + Delta-G solvation = -28595.963612 eV Core-core repulsion = 24745.689141 eV Total energy + Delta-G solvation = -3850.274471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81429 -40.58021 -38.85026 -36.98101 -35.12879 -34.21839 -32.56216 -32.32712 -30.07108 -29.51711 -29.10413 -25.62201 -25.26551 -24.25315 -23.78034 -22.53744 -22.28521 -21.29872 -20.44591 -20.17474 -18.81082 -17.70253 -17.41375 -17.02389 -16.33791 -15.80640 -15.40036 -15.25020 -15.17647 -14.74091 -14.37278 -14.21561 -14.12940 -13.94519 -13.75165 -13.17056 -13.05788 -12.73802 -12.61857 -12.25943 -12.05521 -12.01720 -11.86813 -11.68979 -11.45955 -11.21970 -10.93598 -10.88000 -10.80373 -10.23246 -10.18240 -10.16277 -10.04431 -9.92644 -9.62575 -9.56570 -8.90976 -8.79229 -8.50935 -8.04610 -7.04239 -5.82284 -3.12484 0.53415 1.33216 1.93414 2.62722 3.09644 3.27295 3.41054 3.46056 3.47879 3.62875 4.38328 4.46680 4.57116 4.69208 4.71716 4.81932 4.82709 4.91078 5.01952 5.10833 5.13135 5.22626 5.27777 5.37600 5.44057 5.58177 5.70161 5.71690 5.75392 5.86272 5.87271 5.94031 5.97368 6.04427 6.10946 6.14803 6.21653 6.32598 6.34896 6.42377 6.51141 6.54688 6.64039 6.71838 6.78639 6.80705 6.99870 7.07692 7.50016 7.66286 8.13819 8.35478 9.46800 10.01997 10.36502 11.39553 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.002302 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.532515 B =12158.017423 C =12878.286975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.198 3.802 11 H 0.069 0.931 12 C -0.182 4.182 13 C 0.139 3.861 14 H 0.117 0.883 15 N -0.711 5.711 16 C 0.577 3.423 17 O -0.516 6.516 18 C 0.023 3.977 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.060 4.060 22 C -0.151 4.151 23 C -0.091 4.091 24 C -0.133 4.133 25 C 0.111 3.889 26 N -0.579 5.579 27 H 0.417 0.583 28 C -0.124 4.124 29 C -0.116 4.116 30 C -0.132 4.132 31 C -0.125 4.125 32 H 0.257 0.743 33 H 0.387 0.613 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.390 0.610 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -26.561 -1.663 26.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.085 3.915 11 H 0.087 0.913 12 C -0.224 4.224 13 C 0.035 3.965 14 H 0.135 0.865 15 N -0.361 5.361 16 C 0.362 3.638 17 O -0.391 6.391 18 C -0.086 4.086 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.079 4.079 22 C -0.171 4.171 23 C -0.110 4.110 24 C -0.154 4.154 25 C 0.001 3.999 26 N -0.183 5.183 27 H 0.254 0.746 28 C -0.127 4.127 29 C -0.154 4.154 30 C -0.170 4.170 31 C -0.163 4.163 32 H 0.067 0.933 33 H 0.222 0.778 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.224 0.776 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.302 -25.638 -1.952 25.745 hybrid contribution 0.740 0.543 0.496 1.044 sum 2.042 -25.095 -1.456 25.220 Atomic orbital electron populations 1.69663 1.05114 1.25898 1.56837 1.24772 0.95523 0.97795 1.02486 0.86177 0.78618 0.83701 0.77567 1.21631 1.21751 1.20725 1.19236 0.91049 0.83775 1.43637 0.90981 1.42111 1.05833 0.99092 1.86687 1.20654 0.94562 0.84639 0.91669 0.91283 1.24346 0.96170 0.99694 1.02239 1.22519 1.00043 0.78492 0.95413 0.86511 1.45999 1.40920 1.10315 1.38826 1.17258 0.80676 0.85441 0.80420 1.90888 1.42803 1.54034 1.51386 1.20357 0.99240 0.88532 1.00470 1.20945 1.01016 0.92175 0.99624 1.18236 1.00259 0.93831 0.99988 1.20435 0.98434 0.91293 0.97716 1.20635 0.99491 0.96626 1.00305 1.20866 0.96362 0.98281 0.95505 1.20069 1.03102 0.89182 1.03001 1.18339 0.98228 0.86891 0.96474 1.41945 1.36422 1.04852 1.35117 0.74563 1.23632 0.98554 0.98477 0.91988 1.22528 0.99845 0.96479 0.96591 1.22733 0.99019 0.99557 0.95677 1.22637 0.96027 1.02581 0.95055 0.93332 0.77817 0.91280 0.90684 0.77570 0.82582 0.85700 0.85913 0.85633 0.86044 0.91102 0.91315 0.89921 0.92251 0.89728 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -16.82 4.85 -52.89 -0.26 -17.08 16 10 C 0.20 3.73 4.36 -67.38 -0.29 3.44 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.18 -3.14 7.70 -25.64 -0.20 -3.33 16 13 C 0.14 2.24 4.01 -67.48 -0.27 1.97 16 14 H 0.12 2.30 7.50 -51.93 -0.39 1.91 16 15 N -0.71 -9.25 5.27 -54.56 -0.29 -9.54 16 16 C 0.58 8.58 7.80 -12.68 -0.10 8.48 16 17 O -0.52 -9.86 16.46 5.24 0.09 -9.77 16 18 C 0.02 0.29 6.97 -82.29 -0.57 -0.28 16 19 C -0.11 -1.37 10.53 -39.16 -0.41 -1.78 16 20 C -0.12 -1.31 6.16 -106.93 -0.66 -1.97 16 21 C -0.06 -0.54 10.06 -39.53 -0.40 -0.94 16 22 C -0.15 -1.16 9.96 -39.97 -0.40 -1.55 16 23 C -0.09 -0.66 10.01 -39.53 -0.40 -1.05 16 24 C -0.13 -1.07 10.08 -39.42 -0.40 -1.47 16 25 C 0.11 1.12 7.25 -83.98 -0.61 0.51 16 26 N -0.58 -5.49 6.07 -7.36 -0.04 -5.54 16 27 H 0.42 2.73 8.12 -40.82 -0.33 2.40 16 28 C -0.12 -1.88 0.92 -154.71 -0.14 -2.02 16 29 C -0.12 -1.36 7.15 -26.28 -0.19 -1.55 16 30 C -0.13 -1.71 8.08 -25.75 -0.21 -1.92 16 31 C -0.13 -1.95 7.62 -26.28 -0.20 -2.15 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.39 10.04 7.61 -40.82 -0.31 9.73 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.39 3.82 6.03 -40.82 -0.25 3.58 16 37 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 41 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.07 0.67 6.99 -51.93 -0.36 0.31 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -32.25 387.95 -11.30 -43.54 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -6.65 Total: 15.09 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -5.69 Total: -12.74 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.14 Total: -59.02 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.25 -11.30 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078803615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.104 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds