Wall clock time and date at job start Tue Mar 31 2020 22:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47254 * 269.99771 * 3 2 1 5 5 H 1.48506 * 109.47448 * 29.99917 * 3 2 1 6 6 H 1.48501 * 109.47218 * 149.99804 * 3 2 1 7 7 C 1.38808 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99640 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99975 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99819 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47043 * 34.99626 * 10 9 7 12 12 C 1.53001 * 109.46898 * 274.99750 * 10 9 7 13 13 C 1.53004 * 109.47030 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46853 * 60.00262 * 13 12 10 15 15 C 1.53001 * 109.47089 * 299.99702 * 14 13 12 16 16 C 1.52994 * 109.47218 * 154.99954 * 10 9 7 17 17 H 1.08994 * 109.47382 * 59.99879 * 16 10 9 18 18 N 1.46505 * 109.46865 * 299.99945 * 16 10 9 19 19 C 1.34777 * 120.00091 * 155.00361 * 18 16 10 20 20 O 1.21546 * 119.99862 * 359.97438 * 19 18 16 21 21 C 1.47897 * 120.00063 * 179.97438 * 19 18 16 22 22 C 1.38895 * 121.11436 * 354.14784 * 21 19 18 23 23 C 1.39271 * 119.58168 * 180.23447 * 22 21 19 24 24 N 1.30992 * 121.88195 * 359.45425 * 23 22 21 25 25 C 1.33542 * 121.82918 * 0.55263 * 24 23 22 26 26 C 1.40708 * 120.96757 * 179.72657 * 25 24 23 27 27 C 1.36061 * 119.73806 * 180.02562 * 26 25 24 28 28 C 1.39347 * 121.05382 * 359.97438 * 27 26 25 29 29 C 1.36239 * 120.84322 * 359.97383 * 28 27 26 30 30 C 1.40100 * 119.64292 * 0.02931 * 29 28 27 31 31 H 0.97001 * 120.00063 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00263 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47172 * 299.99797 * 12 10 9 34 34 H 1.09004 * 109.47530 * 59.99987 * 12 10 9 35 35 H 1.09003 * 109.47107 * 179.97438 * 13 12 10 36 36 H 1.08994 * 109.47100 * 299.99991 * 13 12 10 37 37 H 1.08999 * 109.47141 * 59.99640 * 14 13 12 38 38 H 1.09006 * 109.46930 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.47538 * 300.00585 * 15 14 13 40 40 H 1.08996 * 109.47432 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99922 * 334.99882 * 18 16 10 42 42 H 1.07999 * 120.20620 * 359.94793 * 22 21 19 43 43 H 1.08003 * 119.05578 * 179.74357 * 23 22 21 44 44 H 1.08000 * 120.13084 * 0.02562 * 26 25 24 45 45 H 1.07999 * 119.46826 * 180.02562 * 27 26 25 46 46 H 1.08007 * 119.58087 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.18329 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0022 11 1 3.5650 -3.2067 -0.5869 12 6 4.2578 -2.9743 1.4396 13 6 5.0222 -4.2997 1.4408 14 6 6.4097 -4.0886 0.8314 15 6 6.2641 -3.5851 -0.6061 16 6 5.4996 -2.2592 -0.6070 17 1 6.0467 -1.5233 -0.0179 18 7 5.3601 -1.7771 -1.9834 19 6 6.3496 -1.0577 -2.5490 20 8 7.3575 -0.8086 -1.9169 21 6 6.2091 -0.5714 -3.9386 22 6 5.1240 -0.9421 -4.7225 23 6 5.0261 -0.4693 -6.0288 24 7 5.9268 0.3297 -6.5447 25 6 6.9959 0.7274 -5.8504 26 6 7.9554 1.5816 -6.4246 27 6 9.0355 1.9709 -5.6945 28 6 9.2098 1.5376 -4.3816 29 6 8.3010 0.7110 -3.7925 30 6 7.1768 0.2901 -4.5148 31 1 -0.4850 0.8400 -0.0004 32 1 3.8647 -0.3620 0.0007 33 1 4.8049 -2.2384 2.0287 34 1 3.2693 -3.1250 1.8738 35 1 5.1264 -4.6581 2.4649 36 1 4.4747 -5.0354 0.8518 37 1 6.9572 -3.3528 1.4204 38 1 6.9545 -5.0327 0.8326 39 1 5.7165 -4.3208 -1.1951 40 1 7.2524 -3.4352 -1.0405 41 1 4.5556 -1.9756 -2.4877 42 1 4.3635 -1.5966 -4.3230 43 1 4.1810 -0.7663 -6.6321 44 1 7.8349 1.9269 -7.4408 45 1 9.7690 2.6270 -6.1394 46 1 10.0763 1.8610 -3.8240 47 1 8.4469 0.3813 -2.7744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085263883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:12 Heat of formation + Delta-G solvation = 26.969140 kcal Electronic energy + Delta-G solvation = -29515.234763 eV Core-core repulsion = 25662.636461 eV Total energy + Delta-G solvation = -3852.598302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20587 -39.72479 -38.01122 -37.21219 -34.28766 -34.11782 -33.46963 -31.43935 -30.68466 -30.36829 -29.32375 -28.18189 -25.18804 -23.70126 -23.56609 -23.12160 -21.91198 -21.08348 -20.56996 -19.77261 -18.28483 -17.98387 -17.52647 -17.24458 -16.06608 -15.68008 -15.20802 -15.09174 -14.83959 -14.66763 -14.38467 -14.17161 -14.00530 -13.75574 -13.59339 -13.43644 -13.22684 -13.10577 -12.69461 -12.40528 -12.32090 -11.91648 -11.76609 -11.50614 -11.43429 -11.08623 -11.03588 -10.93763 -10.71297 -10.56249 -10.44930 -10.27522 -10.19209 -9.86464 -9.67472 -9.32741 -9.03640 -8.93442 -8.90803 -8.36679 -7.37920 -5.86312 -3.22733 -0.01297 0.66449 1.61942 2.68738 3.04139 3.14178 3.31722 3.36609 3.41126 4.02121 4.11220 4.44433 4.51298 4.52353 4.60379 4.71337 4.81986 4.94760 4.97884 5.06608 5.13383 5.20807 5.32343 5.39519 5.40558 5.49132 5.51414 5.58997 5.64979 5.67859 5.77583 5.82654 5.89739 5.94602 5.98093 6.14601 6.17865 6.25060 6.30100 6.33452 6.36141 6.38463 6.45742 6.63502 6.73434 6.75993 6.89209 7.54943 7.71088 7.88225 8.19656 8.32404 9.10069 9.83048 10.01954 11.31535 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.004082 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.961920 B = 6857.538071 C = 8436.891479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.747 5.747 10 C 0.178 3.822 11 H 0.061 0.939 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.136 3.864 17 H 0.087 0.913 18 N -0.698 5.698 19 C 0.560 3.440 20 O -0.534 6.534 21 C -0.068 4.068 22 C -0.134 4.134 23 C 0.128 3.872 24 N -0.461 5.461 25 C 0.122 3.878 26 C -0.100 4.100 27 C -0.100 4.100 28 C -0.122 4.122 29 C -0.098 4.098 30 C -0.066 4.066 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.406 0.594 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.482 -4.332 -8.986 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.185 4.185 3 Si 0.708 3.292 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.389 5.389 10 C 0.068 3.932 11 H 0.079 0.921 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.031 3.969 17 H 0.105 0.895 18 N -0.347 5.347 19 C 0.346 3.654 20 O -0.413 6.413 21 C -0.080 4.080 22 C -0.155 4.155 23 C -0.044 4.044 24 N -0.170 5.170 25 C 0.001 3.999 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.140 4.140 29 C -0.116 4.116 30 C -0.069 4.069 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.242 0.758 42 H 0.164 0.836 43 H 0.185 0.815 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 16.898 -3.853 -9.381 19.708 hybrid contribution 0.030 0.951 0.630 1.141 sum 16.929 -2.903 -8.751 19.277 Atomic orbital electron populations 1.69687 1.05056 1.25904 1.57092 1.24619 0.95111 0.96999 1.01772 0.86666 0.79324 0.85328 0.77877 1.21137 1.21651 1.20378 1.19024 0.80358 0.94646 1.43576 0.89051 1.42808 1.04056 1.01782 1.90289 1.20448 0.88974 0.89617 0.94176 0.92106 1.22186 1.00626 0.95530 0.99048 1.21585 0.95552 0.98415 1.00263 1.21481 0.97565 1.00658 0.95504 1.21873 1.00375 0.96487 0.97516 1.21473 0.98247 0.95764 0.81375 0.89498 1.45920 1.19881 1.53226 1.15679 1.18020 0.83594 0.78270 0.85489 1.90561 1.29314 1.57746 1.63727 1.20419 0.95281 0.97760 0.94504 1.22532 0.97333 1.00151 0.95515 1.22937 0.96788 0.91985 0.92667 1.67803 1.01646 1.10450 1.37074 1.18896 0.93643 0.97355 0.90055 1.20762 0.93218 0.97357 1.00509 1.20971 0.97398 0.99069 0.94499 1.21086 0.99813 0.98000 0.95140 1.22089 0.91846 0.95222 1.02482 1.18683 0.95922 0.97715 0.94536 0.92974 0.80554 0.92506 0.90986 0.92431 0.92116 0.91954 0.92155 0.91696 0.91750 0.75780 0.83581 0.81550 0.84698 0.85369 0.85469 0.81363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.97 55.49 0.78 -27.36 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 21.90 27.74 -169.99 -4.71 17.19 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 7 C -0.25 -6.44 10.41 -15.06 -0.16 -6.60 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.75 -16.22 4.76 -53.43 -0.25 -16.47 16 10 C 0.18 3.03 2.29 -67.93 -0.16 2.88 16 11 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -2.11 5.50 -26.73 -0.15 -2.26 16 13 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 14 C -0.11 -1.31 5.92 -26.73 -0.16 -1.47 16 15 C -0.12 -1.54 5.50 -26.70 -0.15 -1.69 16 16 C 0.14 2.04 1.98 -67.90 -0.13 1.91 16 17 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 18 N -0.70 -10.17 4.87 -54.71 -0.27 -10.44 16 19 C 0.56 8.70 7.72 -12.31 -0.09 8.60 16 20 O -0.53 -9.24 13.19 5.33 0.07 -9.17 16 21 C -0.07 -0.99 5.94 -104.34 -0.62 -1.61 16 22 C -0.13 -1.64 9.60 -38.95 -0.37 -2.01 16 23 C 0.13 1.51 11.14 -17.53 -0.20 1.31 16 24 N -0.46 -6.33 10.30 -11.00 -0.11 -6.45 16 25 C 0.12 1.72 6.61 -84.87 -0.56 1.16 16 26 C -0.10 -1.16 9.98 -39.43 -0.39 -1.56 16 27 C -0.10 -1.01 9.94 -39.95 -0.40 -1.41 16 28 C -0.12 -1.37 9.96 -39.89 -0.40 -1.77 16 29 C -0.10 -1.37 9.25 -39.60 -0.37 -1.74 16 30 C -0.07 -0.97 5.76 -106.52 -0.61 -1.59 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.36 8.17 5.66 -40.82 -0.23 7.93 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.41 5.48 6.78 -40.82 -0.28 5.20 16 42 H 0.15 1.44 6.55 -52.49 -0.34 1.10 16 43 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.17 2.53 4.98 -52.49 -0.26 2.27 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -32.05 377.83 -10.57 -42.61 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.59 Total: 13.66 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -5.17 Total: -9.26 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.14 Total: -60.72 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.05 -10.57 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085263883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.584 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds