Wall clock time and date at job start Tue Mar 31 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 C 1.53003 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47087 * 59.99958 * 13 12 10 15 15 C 1.52997 * 109.47114 * 300.00120 * 14 13 12 16 16 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 17 17 H 1.08995 * 109.47266 * 59.99845 * 16 10 9 18 18 N 1.46503 * 109.47247 * 299.99162 * 16 10 9 19 19 C 1.34774 * 119.99671 * 154.99774 * 18 16 10 20 20 O 1.21548 * 120.00628 * 0.02562 * 19 18 16 21 21 C 1.47889 * 119.99888 * 180.02562 * 19 18 16 22 22 C 1.40574 * 119.70453 * 359.72990 * 21 19 18 23 23 C 1.35810 * 120.73609 * 179.71148 * 22 21 19 24 24 C 1.40548 * 119.98136 * 0.55710 * 23 22 21 25 25 C 1.40819 * 121.13609 * 179.74197 * 24 23 22 26 26 C 1.36560 * 118.20120 * 179.97438 * 25 24 23 27 27 C 1.39418 * 119.93705 * 0.02562 * 26 25 24 28 28 N 1.31025 * 121.71614 * 359.97438 * 27 26 25 29 29 C 1.33745 * 121.34645 * 0.02562 * 28 27 26 30 30 C 1.38404 * 119.70818 * 180.02562 * 21 19 18 31 31 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 34 34 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 35 35 H 1.08995 * 109.46928 * 299.99922 * 13 12 10 36 36 H 1.09000 * 109.47191 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47147 * 180.02562 * 14 13 12 38 38 H 1.08995 * 109.47266 * 60.00171 * 14 13 12 39 39 H 1.09004 * 109.46812 * 300.00187 * 15 14 13 40 40 H 1.08997 * 109.47293 * 180.02562 * 15 14 13 41 41 H 0.96998 * 119.99938 * 335.01407 * 18 16 10 42 42 H 1.08002 * 119.63318 * 359.97438 * 22 21 19 43 43 H 1.07998 * 120.01291 * 180.25712 * 23 22 21 44 44 H 1.07999 * 120.90211 * 359.97438 * 25 24 23 45 45 H 1.07992 * 120.03049 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.14209 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.23222 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 1 3.5624 -3.2046 -0.5963 12 6 4.2636 -2.9798 1.4281 13 6 5.0292 -4.3045 1.4212 14 6 6.4140 -4.0901 0.8072 15 6 6.2625 -3.5811 -0.6276 16 6 5.4969 -2.2569 -0.6209 17 1 6.0465 -1.5232 -0.0313 18 7 5.3518 -1.7697 -1.9949 19 6 6.3390 -1.0482 -2.5618 20 8 7.3498 -0.8020 -1.9333 21 6 6.1923 -0.5558 -3.9486 22 6 5.0231 -0.8490 -4.6718 23 6 4.8639 -0.4025 -5.9445 24 6 5.8798 0.3517 -6.5565 25 6 5.7426 0.8222 -7.8766 26 6 6.7666 1.5499 -8.4121 27 6 7.9079 1.8074 -7.6539 28 7 8.0325 1.3683 -6.4257 29 6 7.0668 0.6500 -5.8423 30 6 7.2100 0.1842 -4.5250 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3620 0.0004 33 1 4.8133 -2.2460 2.0178 34 1 3.2771 -3.1322 1.8657 35 1 4.4799 -5.0384 0.8315 36 1 5.1367 -4.6673 2.4434 37 1 6.9592 -5.0339 0.8019 38 1 6.9633 -3.3562 1.3969 39 1 5.7132 -4.3151 -1.2173 40 1 7.2490 -3.4288 -1.0653 41 1 4.5452 -1.9663 -2.4966 42 1 4.2408 -1.4321 -4.2087 43 1 3.9590 -0.6311 -6.4880 44 1 4.8517 0.6131 -8.4502 45 1 6.6924 1.9255 -9.4218 46 1 8.7101 2.3839 -8.0902 47 1 8.1081 0.4016 -3.9658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085367195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:21 Heat of formation + Delta-G solvation = 20.355399 kcal Electronic energy + Delta-G solvation = -29038.702951 eV Core-core repulsion = 25185.817856 eV Total energy + Delta-G solvation = -3852.885095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09576 -39.89178 -38.15041 -36.76260 -34.21244 -33.99191 -33.68953 -31.41732 -31.09515 -30.20323 -29.34338 -28.14580 -25.05751 -24.08480 -23.51043 -22.60965 -22.00201 -21.02227 -20.64665 -19.84154 -18.46743 -17.87941 -17.45519 -17.06415 -16.19371 -15.92939 -15.10769 -14.94706 -14.68858 -14.48925 -14.38339 -14.17478 -14.02864 -13.74150 -13.59310 -13.51122 -13.29525 -13.15622 -12.66848 -12.37735 -12.28491 -12.04960 -11.83721 -11.74682 -11.39606 -11.04071 -10.95386 -10.88685 -10.79154 -10.63657 -10.39252 -10.14791 -9.92258 -9.77167 -9.69041 -9.64245 -9.06362 -8.98360 -8.75397 -8.48506 -7.33978 -5.83473 -3.19351 0.05551 0.43479 1.68034 2.35486 3.22535 3.30616 3.34696 3.40502 3.43819 3.93932 4.05541 4.32064 4.44726 4.54454 4.60126 4.67918 4.76413 4.88493 4.91220 4.98554 5.05304 5.20178 5.24017 5.39147 5.44186 5.52838 5.56293 5.63454 5.65783 5.67325 5.75378 5.82425 5.83924 5.88833 6.01997 6.06760 6.13791 6.21316 6.25868 6.34444 6.36724 6.39792 6.43758 6.52868 6.72249 6.78641 6.95155 7.63720 7.71060 7.91803 8.34796 8.35792 9.13629 9.86701 10.06136 11.34439 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.003599 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.801273 B = 7777.981378 C = 9616.710541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.010 3.990 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.178 3.822 11 H 0.060 0.940 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.137 3.863 17 H 0.085 0.915 18 N -0.703 5.703 19 C 0.556 3.444 20 O -0.541 6.541 21 C -0.111 4.111 22 C -0.085 4.085 23 C -0.101 4.101 24 C -0.087 4.087 25 C -0.060 4.060 26 C -0.172 4.172 27 C 0.126 3.874 28 N -0.466 5.466 29 C 0.115 3.885 30 C -0.027 4.027 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.404 0.596 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.160 0.840 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.260 -3.930 -14.570 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.708 3.292 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.389 5.389 10 C 0.068 3.932 11 H 0.078 0.922 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.032 3.968 17 H 0.103 0.897 18 N -0.353 5.353 19 C 0.342 3.658 20 O -0.419 6.419 21 C -0.116 4.116 22 C -0.104 4.104 23 C -0.119 4.119 24 C -0.089 4.089 25 C -0.086 4.086 26 C -0.191 4.191 27 C -0.047 4.047 28 N -0.174 5.174 29 C -0.005 4.005 30 C -0.047 4.047 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.241 0.759 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.156 0.844 46 H 0.177 0.823 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.418 -3.691 -13.516 20.105 hybrid contribution -0.754 1.125 -0.733 1.539 sum 13.665 -2.566 -14.249 19.908 Atomic orbital electron populations 1.69690 1.05067 1.25853 1.57288 1.24616 0.95112 0.97011 1.01857 0.86656 0.79351 0.85264 0.77898 1.21112 1.21725 1.20315 1.19034 0.80406 0.94620 1.43359 0.89095 1.42805 1.04019 1.01841 1.90260 1.20445 0.89115 0.89535 0.94108 0.92178 1.22182 1.00539 0.95533 0.99124 1.21579 0.95604 0.98398 1.00197 1.21482 0.97527 1.00605 0.95621 1.21857 1.00420 0.96578 0.97412 1.21404 0.98028 0.95638 0.81761 0.89652 1.45901 1.20017 1.53659 1.15747 1.18150 0.83526 0.78251 0.85840 1.90757 1.29296 1.58028 1.63841 1.20008 0.95575 1.01155 0.94845 1.21094 0.96422 0.98479 0.94379 1.20899 0.98239 0.97468 0.95323 1.18974 0.95551 0.99280 0.95142 1.21535 0.98931 0.94598 0.93506 1.21949 0.95054 1.00340 1.01805 1.22996 0.96661 0.95497 0.89555 1.68026 1.28982 1.09054 1.11348 1.18756 0.90336 0.96911 0.94508 1.21220 0.98675 0.92808 0.91987 0.93033 0.80513 0.92517 0.91049 0.92161 0.92479 0.92206 0.91959 0.91769 0.91755 0.75927 0.84520 0.84450 0.84116 0.84385 0.82266 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.97 55.49 0.78 -27.56 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 7 C -0.24 -6.47 10.41 -15.06 -0.16 -6.63 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 9 N -0.75 -16.58 4.76 -53.43 -0.25 -16.83 16 10 C 0.18 3.14 2.29 -67.93 -0.16 2.99 16 11 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -2.18 5.51 -26.73 -0.15 -2.33 16 13 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 14 C -0.11 -1.40 5.92 -26.73 -0.16 -1.55 16 15 C -0.12 -1.65 5.49 -26.76 -0.15 -1.79 16 16 C 0.14 2.17 1.97 -67.95 -0.13 2.04 16 17 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 18 N -0.70 -10.84 4.86 -54.76 -0.27 -11.10 16 19 C 0.56 9.14 7.73 -12.31 -0.10 9.04 16 20 O -0.54 -10.36 15.96 5.32 0.08 -10.28 16 21 C -0.11 -1.61 5.87 -105.00 -0.62 -2.22 16 22 C -0.09 -1.05 9.44 -39.57 -0.37 -1.43 16 23 C -0.10 -1.10 9.74 -39.58 -0.39 -1.48 16 24 C -0.09 -1.01 5.75 -106.72 -0.61 -1.63 16 25 C -0.06 -0.52 9.89 -39.21 -0.39 -0.91 16 26 C -0.17 -1.31 10.03 -39.75 -0.40 -1.71 16 27 C 0.13 1.17 11.15 -17.46 -0.19 0.98 16 28 N -0.47 -6.03 10.34 -10.98 -0.11 -6.14 16 29 C 0.12 1.57 6.60 -84.87 -0.56 1.01 16 30 C -0.03 -0.40 9.56 -38.68 -0.37 -0.77 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.36 8.36 5.66 -40.82 -0.23 8.13 16 33 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 5.74 6.58 -40.82 -0.27 5.47 16 42 H 0.14 1.50 6.34 -52.49 -0.33 1.16 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.15 2.24 7.60 -52.48 -0.40 1.85 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -33.32 382.69 -10.58 -43.90 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.71 Total: 12.77 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -5.15 Total: -7.90 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.14 Total: -61.63 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.32 -10.58 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085367195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.258 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds