Wall clock time and date at job start Tue Mar 31 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99968 * 2 1 4 4 H 1.48502 * 109.46798 * 269.99971 * 3 2 1 5 5 H 1.48500 * 109.47187 * 29.99509 * 3 2 1 6 6 H 1.48495 * 109.46988 * 149.99727 * 3 2 1 7 7 C 1.38805 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00209 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99935 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99984 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46913 * 35.00060 * 10 9 7 12 12 C 1.53002 * 109.47435 * 275.00246 * 10 9 7 13 13 C 1.52999 * 109.47059 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47505 * 60.00128 * 13 12 10 15 15 C 1.53002 * 109.46858 * 299.99995 * 14 13 12 16 16 C 1.52999 * 109.47035 * 154.99871 * 10 9 7 17 17 H 1.08999 * 109.46729 * 60.00565 * 16 10 9 18 18 N 1.46490 * 109.47393 * 300.00231 * 16 10 9 19 19 C 1.34780 * 120.00305 * 155.00089 * 18 16 10 20 20 O 1.21589 * 119.99775 * 359.97438 * 19 18 16 21 21 C 1.47566 * 120.00222 * 180.02562 * 19 18 16 22 22 C 1.38697 * 120.43463 * 354.09459 * 21 19 18 23 23 C 1.39005 * 120.75245 * 180.02562 * 22 21 19 24 24 C 1.36343 * 121.18975 * 0.02562 * 23 22 21 25 25 C 1.40350 * 119.92969 * 359.97438 * 24 23 22 26 26 C 1.40688 * 122.10778 * 180.02562 * 25 24 23 27 27 C 1.36266 * 118.66883 * 179.97438 * 26 25 24 28 28 N 1.32506 * 121.83779 * 0.02562 * 27 26 25 29 29 C 1.31316 * 122.72299 * 359.97438 * 28 27 26 30 30 C 1.40133 * 119.91814 * 0.02562 * 29 28 27 31 31 H 0.97002 * 120.00152 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00149 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46777 * 59.99638 * 12 10 9 34 34 H 1.08997 * 109.46588 * 299.99959 * 12 10 9 35 35 H 1.09004 * 109.47093 * 299.99693 * 13 12 10 36 36 H 1.09002 * 109.46689 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.47676 * 179.97438 * 14 13 12 38 38 H 1.08997 * 109.47344 * 59.99315 * 14 13 12 39 39 H 1.08999 * 109.47317 * 299.99701 * 15 14 13 40 40 H 1.09005 * 109.47420 * 180.02562 * 15 14 13 41 41 H 0.97006 * 120.00450 * 334.99998 * 18 16 10 42 42 H 1.08003 * 119.62776 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.40420 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.03674 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.66353 * 0.02562 * 26 25 24 46 46 H 1.07995 * 119.08200 * 180.02562 * 27 26 25 47 47 H 1.08006 * 120.04262 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5649 -3.2062 -0.5888 12 6 4.2576 -2.9758 1.4380 13 6 5.0232 -4.3005 1.4380 14 6 6.4106 -4.0878 0.8292 15 6 6.2650 -3.5828 -0.6077 16 6 5.4995 -2.2587 -0.6080 17 1 6.0466 -1.5233 -0.0181 18 7 5.3601 -1.7752 -1.9838 19 6 6.3497 -1.0553 -2.5487 20 8 7.3579 -0.8067 -1.9161 21 6 6.2091 -0.5679 -3.9344 22 6 5.1198 -0.9462 -4.7051 23 6 4.9810 -0.4914 -6.0113 24 6 5.9074 0.3365 -6.5729 25 6 7.0251 0.7441 -5.8284 26 6 8.0083 1.5974 -6.3618 27 6 9.0647 1.9492 -5.5763 28 7 9.1874 1.5100 -4.3322 29 6 8.3084 0.7119 -3.7711 30 6 7.1845 0.2910 -4.4947 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3620 0.0014 33 1 3.2692 -3.1269 1.8718 34 1 4.8048 -2.2403 2.0278 35 1 4.4764 -5.0361 0.8480 36 1 5.1265 -4.6604 2.4617 37 1 6.9562 -5.0314 0.8296 38 1 6.9573 -3.3521 1.4191 39 1 5.7183 -4.3184 -1.1977 40 1 7.2535 -3.4316 -1.0417 41 1 4.5557 -1.9733 -2.4884 42 1 4.3709 -1.6017 -4.2857 43 1 4.1240 -0.7994 -6.5918 44 1 5.7808 0.6790 -7.5893 45 1 7.9269 1.9669 -7.3734 46 1 9.8230 2.6042 -5.9789 47 1 8.4513 0.3804 -2.7532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085380153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:07 Heat of formation + Delta-G solvation = 25.441256 kcal Electronic energy + Delta-G solvation = -29525.093649 eV Core-core repulsion = 25672.429094 eV Total energy + Delta-G solvation = -3852.664556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18920 -39.75221 -38.07128 -37.26929 -34.25296 -34.08039 -33.05069 -31.42692 -31.31184 -30.31567 -29.16068 -28.06539 -24.83452 -23.72597 -23.58166 -23.46259 -21.94410 -21.06158 -20.49911 -19.73273 -18.18846 -17.98920 -17.49062 -16.84225 -16.33114 -15.89358 -15.33626 -15.05452 -14.96336 -14.66853 -14.33740 -14.11596 -13.84338 -13.77242 -13.56491 -13.41337 -13.14112 -12.83087 -12.67581 -12.41713 -12.30065 -12.22081 -12.15539 -11.75535 -11.41508 -11.06334 -10.98578 -10.91155 -10.65487 -10.41243 -10.29232 -10.17136 -9.90353 -9.73080 -9.66227 -9.41918 -9.30478 -9.01722 -8.87279 -8.23612 -7.36240 -5.85231 -3.21406 -0.03391 0.73495 1.50787 2.62611 3.14205 3.25335 3.32950 3.38542 3.42379 3.99526 4.33386 4.41165 4.52580 4.52995 4.61159 4.71766 4.77389 4.85645 4.91009 4.99288 5.11309 5.18545 5.33906 5.41570 5.44187 5.53621 5.54162 5.57395 5.61979 5.70613 5.76914 5.80807 5.85433 5.89516 5.99658 6.00537 6.14354 6.18475 6.29508 6.33509 6.37018 6.40681 6.49067 6.60460 6.72976 6.76298 6.91973 7.60764 7.89666 7.93446 8.26657 8.33579 9.11583 9.84582 10.03718 11.32644 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.004094 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.219051 B = 6837.305060 C = 8411.001108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.178 3.822 11 H 0.060 0.940 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.136 3.864 17 H 0.087 0.913 18 N -0.699 5.699 19 C 0.559 3.441 20 O -0.540 6.540 21 C -0.099 4.099 22 C -0.075 4.075 23 C -0.104 4.104 24 C -0.091 4.091 25 C -0.031 4.031 26 C -0.164 4.164 27 C 0.075 3.925 28 N -0.492 5.492 29 C 0.146 3.854 30 C -0.079 4.079 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.405 0.595 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.151 0.849 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.996 -4.721 -11.874 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.186 4.186 3 Si 0.708 3.292 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.389 5.389 10 C 0.068 3.932 11 H 0.078 0.922 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.031 3.969 17 H 0.105 0.895 18 N -0.348 5.348 19 C 0.347 3.653 20 O -0.420 6.420 21 C -0.104 4.104 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.109 4.109 25 C -0.036 4.036 26 C -0.184 4.184 27 C -0.068 4.068 28 N -0.200 5.200 29 C -0.024 4.024 30 C -0.082 4.082 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.242 0.758 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.168 0.832 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 15.197 -4.249 -11.055 19.267 hybrid contribution -0.797 1.026 -0.838 1.546 sum 14.400 -3.223 -11.892 18.952 Atomic orbital electron populations 1.69690 1.05069 1.25879 1.57202 1.24618 0.95110 0.97012 1.01811 0.86661 0.79367 0.85282 0.77879 1.21141 1.21696 1.20298 1.19025 0.80395 0.94626 1.43459 0.89087 1.42808 1.04033 1.01822 1.90271 1.20448 0.89035 0.89567 0.94157 0.92174 1.22183 1.00581 0.95551 0.99079 1.21580 0.95582 0.98396 1.00243 1.21478 0.97519 1.00658 0.95564 1.21857 1.00422 0.96506 0.97468 1.21437 0.98146 0.95782 0.81528 0.89459 1.45912 1.19897 1.53366 1.15663 1.18050 0.83481 0.78099 0.85690 1.90541 1.29396 1.58141 1.63883 1.19949 0.96071 0.99883 0.94459 1.21542 0.95895 0.97848 0.94074 1.20947 0.99268 0.97035 0.95026 1.21152 0.92996 0.96908 0.99823 1.18162 0.95545 0.96826 0.93097 1.21858 0.95449 0.99691 1.01404 1.22299 0.96788 0.97688 0.90034 1.67671 1.29613 1.10777 1.11944 1.24637 0.87044 0.89226 1.01458 1.18856 0.96735 0.98409 0.94166 0.93008 0.80516 0.91032 0.92489 0.92167 0.92462 0.92184 0.91919 0.91775 0.91674 0.75843 0.84529 0.84609 0.84751 0.84514 0.83186 0.78329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.97 55.49 0.78 -27.38 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 21.90 27.74 -169.99 -4.71 17.19 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.25 -6.42 10.41 -15.06 -0.16 -6.58 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 N -0.75 -16.26 4.76 -53.42 -0.25 -16.52 16 10 C 0.18 3.05 2.29 -67.93 -0.16 2.89 16 11 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -2.13 5.50 -26.73 -0.15 -2.27 16 13 C -0.12 -1.50 5.92 -26.74 -0.16 -1.66 16 14 C -0.11 -1.34 5.92 -26.73 -0.16 -1.49 16 15 C -0.12 -1.56 5.49 -26.75 -0.15 -1.71 16 16 C 0.14 2.05 1.97 -67.96 -0.13 1.92 16 17 H 0.09 1.49 7.58 -51.93 -0.39 1.09 16 18 N -0.70 -10.19 4.86 -54.87 -0.27 -10.45 16 19 C 0.56 8.64 7.70 -12.45 -0.10 8.54 16 20 O -0.54 -9.38 13.13 5.29 0.07 -9.31 16 21 C -0.10 -1.38 5.90 -104.67 -0.62 -2.00 16 22 C -0.07 -0.86 9.51 -39.13 -0.37 -1.23 16 23 C -0.10 -1.01 9.93 -39.98 -0.40 -1.41 16 24 C -0.09 -0.89 9.79 -39.47 -0.39 -1.27 16 25 C -0.03 -0.38 5.74 -106.84 -0.61 -0.99 16 26 C -0.16 -1.73 9.88 -39.37 -0.39 -2.12 16 27 C 0.08 0.88 11.07 -17.97 -0.20 0.68 16 28 N -0.49 -7.24 10.30 -13.22 -0.14 -7.38 16 29 C 0.15 2.24 10.49 -17.06 -0.18 2.06 16 30 C -0.08 -1.13 5.76 -106.59 -0.61 -1.75 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.36 8.19 5.66 -40.82 -0.23 7.96 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.41 5.46 6.67 -40.82 -0.27 5.19 16 42 H 0.14 1.35 6.42 -52.48 -0.34 1.02 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 47 H 0.20 3.25 4.98 -52.48 -0.26 2.98 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -32.12 377.40 -10.44 -42.56 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.58 Total: 13.79 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -5.02 Total: -8.18 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.12 Total: -61.73 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.12 -10.44 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085380153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.000 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds