Wall clock time and date at job start Tue Mar 31 2020 22:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48502 * 109.47294 * 239.99925 * 3 2 1 5 5 H 1.48507 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47228 * 119.99870 * 3 2 1 7 7 C 1.38804 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00438 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00101 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47154 * 35.00057 * 10 9 7 12 12 C 1.52998 * 109.46856 * 274.99386 * 10 9 7 13 13 C 1.53003 * 109.46808 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47096 * 60.00639 * 13 12 10 15 15 C 1.53008 * 109.46938 * 299.99912 * 14 13 12 16 16 C 1.52995 * 109.47264 * 59.99698 * 15 14 13 17 17 H 1.09009 * 109.46994 * 60.00116 * 16 15 14 18 18 N 1.46496 * 109.47412 * 179.97438 * 16 15 14 19 19 C 1.34777 * 120.00101 * 275.00891 * 18 16 15 20 20 O 1.21542 * 120.00006 * 359.97438 * 19 18 16 21 21 C 1.47887 * 120.00103 * 179.97438 * 19 18 16 22 22 C 1.40605 * 119.72952 * 0.02562 * 21 19 18 23 23 C 1.35842 * 120.95273 * 180.02562 * 22 21 19 24 24 C 1.40497 * 119.88054 * 359.95809 * 23 22 21 25 25 C 1.40486 * 121.84230 * 180.02562 * 24 23 22 26 26 N 1.31211 * 119.94356 * 180.02562 * 25 24 23 27 27 C 1.32557 * 122.79848 * 359.97438 * 26 25 24 28 28 C 1.36212 * 121.85172 * 0.26889 * 27 26 25 29 29 C 1.40764 * 118.67503 * 359.48205 * 28 27 26 30 30 C 1.38526 * 119.73050 * 179.97438 * 21 19 18 31 31 H 0.96997 * 120.00638 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99517 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.47787 * 300.00283 * 12 10 9 34 34 H 1.09005 * 109.46961 * 60.00864 * 12 10 9 35 35 H 1.08997 * 109.46923 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46973 * 300.00341 * 13 12 10 37 37 H 1.08992 * 109.47357 * 59.99523 * 14 13 12 38 38 H 1.08997 * 109.47460 * 180.02562 * 14 13 12 39 39 H 1.09005 * 109.46527 * 299.99821 * 15 14 13 40 40 H 1.08997 * 109.46704 * 180.02562 * 15 14 13 41 41 H 0.97002 * 119.99634 * 94.99601 * 18 16 15 42 42 H 1.08000 * 119.51975 * 0.02562 * 22 21 19 43 43 H 1.07997 * 120.06536 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.02602 * 0.04390 * 25 24 23 45 45 H 1.08003 * 119.07174 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.66758 * 179.72881 * 28 27 26 47 47 H 1.07995 * 120.36658 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5900 12 6 2.4220 -4.0355 -1.4365 13 6 3.1866 -5.3608 -1.4365 14 6 2.3090 -6.4559 -0.8271 15 6 1.9451 -6.0771 0.6100 16 6 1.1806 -4.7518 0.6100 17 1 0.2699 -4.8576 0.0205 18 7 0.8317 -4.3893 1.9859 19 6 -0.2868 -4.8860 2.5506 20 8 -1.0061 -5.6343 1.9183 21 6 -0.6387 -4.5206 3.9397 22 6 0.1972 -3.6541 4.6659 23 6 -0.1020 -3.3024 5.9435 24 6 -1.2620 -3.8068 6.5549 25 6 -1.6112 -3.4699 7.8733 26 7 -2.7033 -3.9631 8.4079 27 6 -3.5158 -4.7821 7.7551 28 6 -3.2649 -5.1738 6.4749 29 6 -2.1139 -4.6817 5.8312 30 6 -1.7899 -5.0339 4.5145 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3880 0.0005 33 1 1.5114 -4.1418 -2.0259 34 1 3.0470 -3.2551 -1.8708 35 1 3.4461 -5.6304 -2.4602 36 1 4.0973 -5.2549 -0.8470 37 1 1.3983 -6.5617 -1.4166 38 1 2.8537 -7.4000 -0.8267 39 1 2.8558 -5.9712 1.1994 40 1 1.3202 -6.8575 1.0442 41 1 1.4057 -3.7920 2.4905 42 1 1.0900 -3.2625 4.2012 43 1 0.5505 -2.6361 6.4881 44 1 -0.9814 -2.8054 8.4463 45 1 -4.3990 -5.1529 8.2539 46 1 -3.9378 -5.8455 5.9624 47 1 -2.4301 -5.6989 3.9540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085384575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:19 Heat of formation + Delta-G solvation = 14.793330 kcal Electronic energy + Delta-G solvation = -28910.452780 eV Core-core repulsion = 25057.326495 eV Total energy + Delta-G solvation = -3853.126284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02601 -39.79905 -38.09940 -36.88690 -34.10953 -33.92599 -33.12110 -31.57582 -31.16886 -29.76764 -29.26838 -27.74799 -25.01948 -23.92522 -23.75424 -22.62437 -22.00175 -21.11462 -20.50669 -19.71595 -18.19844 -17.80488 -17.18868 -16.74383 -16.20695 -15.81875 -15.09927 -15.05098 -14.84167 -14.31211 -14.29340 -13.95907 -13.83945 -13.78122 -13.68991 -13.54448 -13.02775 -12.90331 -12.76050 -12.46960 -12.32244 -12.11722 -11.98039 -11.24874 -11.11581 -10.95434 -10.88059 -10.78678 -10.60786 -10.40844 -10.37311 -10.23138 -9.88812 -9.76194 -9.69102 -9.58745 -9.23603 -8.96196 -8.65560 -8.25052 -7.03657 -5.82014 -3.12357 0.08214 0.56153 1.70468 2.50286 3.33619 3.38211 3.43486 3.44670 3.44894 3.96829 4.20433 4.35407 4.51147 4.54597 4.60156 4.75494 4.87176 5.00752 5.02255 5.07868 5.12229 5.25210 5.39793 5.47590 5.48427 5.51929 5.57266 5.67611 5.77300 5.77506 5.85115 5.88480 5.91173 5.94085 6.08130 6.15393 6.16954 6.27988 6.41840 6.42180 6.43985 6.45809 6.54443 6.58020 6.80234 6.84604 7.03425 7.62582 7.75620 7.80319 8.34757 8.44286 9.46597 10.02568 10.37793 11.39656 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.003440 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.835864 B = 8136.453411 C =10385.514739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.140 3.860 17 H 0.086 0.914 18 N -0.698 5.698 19 C 0.556 3.444 20 O -0.544 6.544 21 C -0.102 4.102 22 C -0.086 4.086 23 C -0.092 4.092 24 C -0.098 4.098 25 C 0.143 3.857 26 N -0.487 5.487 27 C 0.068 3.932 28 C -0.144 4.144 29 C -0.035 4.035 30 C -0.048 4.048 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.403 0.597 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.165 0.835 45 H 0.153 0.847 46 H 0.140 0.860 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -12.340 11.237 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.035 3.965 17 H 0.104 0.896 18 N -0.347 5.347 19 C 0.342 3.658 20 O -0.423 6.423 21 C -0.107 4.107 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.100 4.100 25 C -0.028 4.028 26 N -0.195 5.195 27 C -0.075 4.075 28 C -0.164 4.164 29 C -0.040 4.040 30 C -0.068 4.068 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.239 0.761 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.182 0.818 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.078 -12.556 11.629 17.114 hybrid contribution 0.615 1.171 -0.807 1.549 sum 0.538 -11.386 10.822 15.717 Atomic orbital electron populations 1.69656 1.05088 1.25820 1.57028 1.24728 0.95416 0.97595 1.02773 0.86323 0.78545 0.83763 0.77823 1.21297 1.21750 1.21294 1.19145 0.90862 0.83990 1.43474 0.91252 1.42417 1.05809 0.99447 1.88592 1.20464 0.93864 0.85750 0.93671 0.93143 1.22221 0.99996 0.95551 0.99638 1.21585 0.98516 0.95668 1.00014 1.21471 0.99946 0.98052 0.95704 1.21875 1.00004 0.97158 0.97269 1.21359 0.99205 0.94154 0.81768 0.89615 1.45836 1.24747 1.48663 1.15491 1.18158 0.81162 0.80554 0.85908 1.90742 1.50886 1.36872 1.63786 1.20131 0.96543 0.99345 0.94645 1.21080 0.99339 0.95748 0.94325 1.20882 0.95806 0.99341 0.95150 1.19157 0.96345 0.98498 0.95998 1.23244 0.92932 0.95656 0.91002 1.67379 1.04270 1.09491 1.38350 1.22157 0.98405 0.94768 0.92122 1.21983 0.97012 1.00924 0.96439 1.18135 0.95004 0.96663 0.94166 1.21404 0.95322 0.97259 0.92770 0.93416 0.78118 0.92426 0.91543 0.92648 0.92373 0.91928 0.92344 0.91989 0.91895 0.76108 0.84717 0.84276 0.81808 0.82971 0.84211 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 9 N -0.72 -16.77 4.95 -53.43 -0.26 -17.04 16 10 C 0.17 3.14 2.30 -67.93 -0.16 2.99 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.24 5.50 -26.73 -0.15 -2.38 16 13 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 16 C 0.14 2.30 1.97 -67.93 -0.13 2.17 16 17 H 0.09 1.62 7.58 -51.92 -0.39 1.23 16 18 N -0.70 -11.09 4.86 -54.74 -0.27 -11.35 16 19 C 0.56 9.27 7.73 -12.31 -0.10 9.17 16 20 O -0.54 -10.52 15.96 5.33 0.09 -10.43 16 21 C -0.10 -1.47 5.87 -104.95 -0.62 -2.08 16 22 C -0.09 -1.07 9.44 -39.55 -0.37 -1.44 16 23 C -0.09 -0.99 9.77 -39.59 -0.39 -1.38 16 24 C -0.10 -1.13 5.75 -106.78 -0.61 -1.75 16 25 C 0.14 1.50 11.04 -16.97 -0.19 1.32 16 26 N -0.49 -5.65 10.29 -13.15 -0.14 -5.78 16 27 C 0.07 0.70 11.07 -17.97 -0.20 0.50 16 28 C -0.14 -1.49 9.88 -39.36 -0.39 -1.88 16 29 C -0.03 -0.42 5.74 -106.82 -0.61 -1.04 16 30 C -0.05 -0.65 9.38 -38.78 -0.36 -1.01 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 5.96 6.59 -40.82 -0.27 5.69 16 42 H 0.14 1.51 6.34 -52.49 -0.33 1.18 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.15 1.87 7.62 -52.49 -0.40 1.47 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -31.75 385.71 -10.80 -42.55 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -6.75 Total: 14.94 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.98 Total: -8.77 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.06 Total: -60.62 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.75 -10.80 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085384575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.343 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds