Wall clock time and date at job start Tue Mar 31 2020 22:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48498 * 109.47298 * 269.99699 * 3 2 1 5 5 H 1.48499 * 109.47318 * 29.99946 * 3 2 1 6 6 H 1.48499 * 109.47298 * 149.99872 * 3 2 1 7 7 C 1.38811 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99911 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00139 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.46595 * 35.01028 * 10 9 7 12 12 C 1.52992 * 109.47408 * 275.00713 * 10 9 7 13 13 C 1.52999 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47179 * 60.00100 * 13 12 10 15 15 C 1.53005 * 109.46840 * 300.00084 * 14 13 12 16 16 C 1.52999 * 109.47303 * 59.99992 * 15 14 13 17 17 H 1.08999 * 109.46965 * 59.99658 * 16 15 14 18 18 N 1.46499 * 109.47136 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99665 * 275.27771 * 18 16 15 20 20 O 1.21503 * 120.00321 * 359.72059 * 19 18 16 21 21 C 1.48277 * 119.99570 * 179.72350 * 19 18 16 22 22 C 1.40280 * 119.23579 * 179.72925 * 21 19 18 23 23 C 1.36510 * 119.81116 * 179.69955 * 22 21 19 24 24 C 1.40754 * 118.24764 * 0.57405 * 23 22 21 25 25 C 1.40416 * 121.28522 * 179.64471 * 24 23 22 26 26 C 1.36140 * 119.64710 * 179.97438 * 25 24 23 27 27 C 1.39430 * 120.91768 * 0.05038 * 26 25 24 28 28 C 1.35993 * 121.08484 * 359.97438 * 27 26 25 29 29 C 1.40826 * 119.73430 * 359.97438 * 28 27 26 30 30 N 1.31879 * 119.24537 * 359.97438 * 21 19 18 31 31 H 0.97002 * 120.00513 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99829 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.47246 * 59.99770 * 12 10 9 34 34 H 1.08999 * 109.47499 * 299.99761 * 12 10 9 35 35 H 1.09000 * 109.47077 * 299.99701 * 13 12 10 36 36 H 1.09005 * 109.47368 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.46999 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47056 * 60.00198 * 14 13 12 39 39 H 1.09006 * 109.46786 * 299.99624 * 15 14 13 40 40 H 1.08999 * 109.46630 * 180.02562 * 15 14 13 41 41 H 0.97001 * 119.99790 * 94.99484 * 18 16 15 42 42 H 1.07995 * 120.09782 * 359.97438 * 22 21 19 43 43 H 1.08002 * 120.87451 * 180.26453 * 23 22 21 44 44 H 1.08000 * 120.17521 * 0.02799 * 25 24 23 45 45 H 1.08000 * 119.53885 * 180.02562 * 26 25 24 46 46 H 1.08006 * 119.45302 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.13304 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0011 11 1 3.5647 -3.2069 -0.5874 12 6 4.2588 -2.9739 1.4385 13 6 5.0233 -4.2991 1.4395 14 6 6.4103 -4.0883 0.8291 15 6 6.2636 -3.5851 -0.6084 16 6 5.4991 -2.2598 -0.6094 17 1 6.0470 -1.5239 -0.0210 18 7 5.3582 -1.7784 -1.9859 19 6 6.3497 -1.0645 -2.5548 20 8 7.3582 -0.8158 -1.9245 21 6 6.2096 -0.5824 -3.9501 22 6 7.2490 0.1642 -4.5246 23 6 7.1350 0.6085 -5.8103 24 6 5.9560 0.3066 -6.5175 25 6 5.7684 0.7382 -7.8404 26 6 4.6151 0.4267 -8.4933 27 6 3.6148 -0.3151 -7.8662 28 6 3.7610 -0.7496 -6.5859 29 6 4.9399 -0.4492 -5.8766 30 7 5.1088 -0.8613 -4.6206 31 1 -0.4851 0.8400 -0.0004 32 1 3.8646 -0.3620 -0.0004 33 1 3.2706 -3.1245 1.8734 34 1 4.8063 -2.2377 2.0271 35 1 4.4753 -5.0351 0.8511 36 1 5.1274 -4.6578 2.4636 37 1 6.9551 -5.0324 0.8302 38 1 6.9582 -3.3524 1.4175 39 1 5.7157 -4.3212 -1.1969 40 1 7.2518 -3.4354 -1.0435 41 1 4.5530 -1.9770 -2.4891 42 1 8.1387 0.3830 -3.9530 43 1 7.9264 1.1811 -6.2710 44 1 6.5354 1.3134 -8.3377 45 1 4.4728 0.7592 -9.5109 46 1 2.7091 -0.5484 -8.4062 47 1 2.9762 -1.3229 -6.1149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085403200.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:22 Heat of formation + Delta-G solvation = 21.330190 kcal Electronic energy + Delta-G solvation = -29235.210018 eV Core-core repulsion = 25382.367193 eV Total energy + Delta-G solvation = -3852.842825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12167 -39.71584 -38.07076 -36.88032 -34.19332 -34.07311 -33.49678 -31.34112 -30.97695 -30.27216 -29.30007 -28.10049 -25.29014 -23.87507 -23.45284 -22.30271 -22.28128 -20.96593 -20.43937 -19.78943 -18.40127 -17.92511 -17.53200 -17.23202 -15.94112 -15.50073 -15.18359 -15.04004 -14.75602 -14.57593 -14.34149 -14.16397 -13.93477 -13.59949 -13.50572 -13.36278 -13.29295 -13.07934 -12.60831 -12.32462 -12.23988 -11.86795 -11.82683 -11.71324 -11.35504 -10.99487 -10.92164 -10.84567 -10.78817 -10.62479 -10.36665 -10.16842 -10.10574 -9.78980 -9.58243 -9.51840 -9.00765 -8.92319 -8.68922 -8.47951 -7.27366 -5.77144 -3.12384 0.04729 0.50699 1.76560 2.35456 3.21535 3.27344 3.39294 3.43952 3.47038 3.96215 4.01503 4.34083 4.55218 4.59852 4.60225 4.72201 4.92196 4.92915 4.95469 5.05952 5.14568 5.23205 5.27796 5.42728 5.49725 5.56566 5.61163 5.68802 5.71431 5.76617 5.81954 5.85751 5.88305 5.92579 6.05598 6.11764 6.18999 6.25472 6.28137 6.38116 6.40436 6.43560 6.47891 6.59497 6.76364 6.83116 6.99491 7.51382 7.86262 7.98125 8.38403 8.41711 9.19883 9.93046 10.12355 11.40994 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.004051 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.379518 B = 6910.784053 C = 8698.213559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.009 3.991 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.178 3.822 11 H 0.061 0.939 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.135 3.865 17 H 0.085 0.915 18 N -0.686 5.686 19 C 0.566 3.434 20 O -0.541 6.541 21 C 0.120 3.880 22 C -0.125 4.125 23 C -0.066 4.066 24 C -0.089 4.089 25 C -0.105 4.105 26 C -0.108 4.108 27 C -0.108 4.108 28 C -0.079 4.079 29 C 0.124 3.876 30 N -0.434 5.434 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.416 0.584 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.400 -3.590 -14.467 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.186 4.186 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.388 5.388 10 C 0.068 3.932 11 H 0.079 0.921 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.030 3.970 17 H 0.103 0.897 18 N -0.335 5.335 19 C 0.350 3.650 20 O -0.418 6.418 21 C -0.034 4.034 22 C -0.145 4.145 23 C -0.092 4.092 24 C -0.091 4.091 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.097 4.097 29 C 0.001 3.999 30 N -0.146 5.146 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.253 0.747 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.101 -3.964 -13.658 20.027 hybrid contribution 0.730 1.798 -0.608 2.034 sum 14.831 -2.166 -14.266 20.692 Atomic orbital electron populations 1.69688 1.05031 1.25741 1.57557 1.24601 0.95110 0.96958 1.01971 0.86641 0.79304 0.85359 0.77789 1.21233 1.21777 1.20371 1.19031 0.80397 0.94633 1.42995 0.89076 1.42784 1.04034 1.01802 1.90194 1.20438 0.89075 0.89623 0.94035 0.92112 1.22183 1.00557 0.95502 0.99113 1.21582 0.95594 0.98443 1.00176 1.21480 0.97531 1.00592 0.95571 1.21868 1.00366 0.96618 0.97416 1.21456 0.98153 0.95693 0.81747 0.89655 1.45867 1.20108 1.52455 1.15112 1.17893 0.83698 0.78618 0.84795 1.90750 1.29693 1.58311 1.63044 1.21449 0.90609 0.96448 0.94920 1.21751 1.00099 0.97049 0.95614 1.21434 0.96435 0.97498 0.93855 1.18985 0.95302 0.99094 0.95709 1.20970 0.98348 1.00012 0.93001 1.20999 0.93583 0.97735 1.00243 1.20945 0.99392 0.97611 0.94830 1.20993 0.95837 0.98966 0.93946 1.18882 0.94658 0.96335 0.90059 1.67877 1.21111 1.18616 1.06952 0.93114 0.80587 0.91030 0.92526 0.92137 0.92484 0.92214 0.91969 0.91697 0.91793 0.74705 0.83222 0.83779 0.85146 0.85426 0.85004 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.10 13.97 55.49 0.78 -28.32 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 22.77 27.73 -169.99 -4.71 18.06 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 7 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -17.33 4.76 -53.43 -0.25 -17.59 16 10 C 0.18 3.32 2.29 -67.93 -0.16 3.16 16 11 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 12 C -0.13 -2.24 5.50 -26.74 -0.15 -2.39 16 13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16 14 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 15 C -0.12 -1.72 5.49 -26.73 -0.15 -1.87 16 16 C 0.13 2.25 1.98 -67.93 -0.13 2.11 16 17 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.69 -11.73 4.90 -54.61 -0.27 -12.00 16 19 C 0.57 9.82 7.77 -12.13 -0.09 9.73 16 20 O -0.54 -10.22 15.95 5.36 0.09 -10.13 16 21 C 0.12 1.89 6.75 -82.95 -0.56 1.33 16 22 C -0.12 -1.62 9.54 -39.44 -0.38 -1.99 16 23 C -0.07 -0.71 9.88 -39.26 -0.39 -1.10 16 24 C -0.09 -1.05 5.75 -106.72 -0.61 -1.66 16 25 C -0.10 -0.94 9.77 -39.52 -0.39 -1.33 16 26 C -0.11 -0.89 9.96 -39.89 -0.40 -1.29 16 27 C -0.11 -1.01 9.94 -39.94 -0.40 -1.41 16 28 C -0.08 -0.96 9.99 -39.41 -0.39 -1.35 16 29 C 0.12 1.75 6.61 -84.86 -0.56 1.19 16 30 N -0.43 -6.92 9.47 -7.54 -0.07 -7.00 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.36 8.69 5.66 -40.82 -0.23 8.46 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.42 7.22 7.91 -40.82 -0.32 6.90 16 42 H 0.15 1.77 7.60 -52.49 -0.40 1.37 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 47 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -33.18 385.10 -10.82 -43.99 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -6.85 Total: 13.97 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -5.32 Total: -6.80 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.18 Total: -64.90 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.18 -10.82 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085403200.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.324 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds