Wall clock time and date at job start Tue Mar 31 2020 23:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47331 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47293 * 30.00165 * 3 2 1 6 6 H 1.48500 * 109.47231 * 150.00144 * 3 2 1 7 7 C 1.38822 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99479 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99607 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.01958 * 33.60569 * 10 9 7 12 12 C 1.54271 * 110.03261 * 272.16401 * 10 9 7 13 13 C 1.54891 * 104.19272 * 264.32694 * 12 10 9 14 14 C 1.54882 * 102.75031 * 322.05716 * 13 12 10 15 15 H 1.09008 * 110.59740 * 279.20774 * 14 13 12 16 16 C 1.53002 * 110.48822 * 156.62216 * 14 13 12 17 17 N 1.46507 * 109.46910 * 70.22362 * 16 14 13 18 18 C 1.34774 * 119.99617 * 180.27801 * 17 16 14 19 19 O 1.21542 * 120.00194 * 359.72395 * 18 17 16 20 20 C 1.47949 * 119.99671 * 179.72371 * 18 17 16 21 21 N 1.32203 * 120.15947 * 354.14392 * 20 18 17 22 22 C 1.32027 * 122.67885 * 179.74862 * 21 20 18 23 23 C 1.36685 * 122.02894 * 0.53326 * 22 21 20 24 24 C 1.40529 * 118.85026 * 359.74686 * 23 22 21 25 25 C 1.40318 * 122.23115 * 179.97438 * 24 23 22 26 26 C 1.36198 * 119.45833 * 180.02562 * 25 24 23 27 27 C 1.39382 * 121.00546 * 0.02562 * 26 25 24 28 28 C 1.36261 * 121.07509 * 359.97438 * 27 26 25 29 29 C 1.40092 * 119.53908 * 0.02562 * 28 27 26 30 30 C 1.53874 * 110.02999 * 154.99719 * 10 9 7 31 31 H 0.96995 * 120.00621 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00332 * 359.97438 * 9 7 2 33 33 H 1.08998 * 110.47935 * 23.00517 * 12 10 9 34 34 H 1.09001 * 110.48504 * 145.51614 * 12 10 9 35 35 H 1.09001 * 110.75357 * 203.73940 * 13 12 10 36 36 H 1.09004 * 110.75450 * 80.37239 * 13 12 10 37 37 H 1.09001 * 109.47190 * 310.22663 * 16 14 13 38 38 H 1.09000 * 109.47131 * 190.22048 * 16 14 13 39 39 H 0.97000 * 119.99943 * 0.02562 * 17 16 14 40 40 H 1.07995 * 118.98536 * 180.25523 * 22 21 20 41 41 H 1.08003 * 120.57717 * 179.71930 * 23 22 21 42 42 H 1.08006 * 120.26805 * 0.02562 * 25 24 23 43 43 H 1.08003 * 119.50108 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.46239 * 179.97438 * 27 26 25 45 45 H 1.08007 * 120.22816 * 180.02562 * 28 27 26 46 46 H 1.08997 * 110.03364 * 359.97438 * 30 10 9 47 47 H 1.08999 * 110.03242 * 238.56208 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9830 -3.5532 0.5692 12 6 2.3709 -4.0877 -1.4462 13 6 1.2229 -5.0622 -1.8088 14 6 1.0001 -5.8355 -0.4855 15 1 1.7396 -6.6289 -0.3759 16 6 -0.4154 -6.4140 -0.4350 17 7 -0.5316 -7.5059 -1.4050 18 6 -1.6994 -8.1649 -1.5410 19 8 -2.6545 -7.8567 -0.8555 20 6 -1.8185 -9.2634 -2.5249 21 7 -0.8209 -9.5255 -3.3519 22 6 -0.8719 -10.4962 -4.2453 23 6 -1.9715 -11.2960 -4.3848 24 6 -3.0784 -11.0792 -3.5466 25 6 -4.2433 -11.8572 -3.6289 26 6 -5.2830 -11.5975 -2.7885 27 6 -5.2075 -10.5708 -1.8488 28 6 -4.0917 -9.7960 -1.7417 29 6 -3.0019 -10.0336 -2.5894 30 6 1.1866 -4.7681 0.6125 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.3628 -3.2242 -2.1113 34 1 3.3343 -4.5955 -1.4934 35 1 1.5288 -5.7401 -2.6057 36 1 0.3246 -4.5129 -2.0912 37 1 -1.1359 -5.6333 -0.6788 38 1 -0.6169 -6.7946 0.5663 39 1 0.2308 -7.7520 -1.9518 40 1 -0.0202 -10.6606 -4.8886 41 1 -1.9896 -12.0806 -5.1268 42 1 -4.3147 -12.6555 -4.3529 43 1 -6.1801 -12.1956 -2.8515 44 1 -6.0470 -10.3862 -1.1950 45 1 -4.0477 -9.0043 -1.0084 46 1 0.2188 -4.3634 0.9085 47 1 1.6888 -5.2044 1.4759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086789385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:40 Heat of formation + Delta-G solvation = 25.845249 kcal Electronic energy + Delta-G solvation = -27935.068239 eV Core-core repulsion = 24082.421202 eV Total energy + Delta-G solvation = -3852.647037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43467 -39.51629 -38.07798 -37.71262 -34.98964 -33.39470 -33.19163 -31.51904 -30.80832 -30.03473 -28.88392 -27.34268 -25.55000 -24.10640 -23.84692 -23.18671 -22.73504 -21.01558 -19.89035 -19.19823 -18.40591 -17.78171 -17.42763 -17.06670 -16.33408 -16.04058 -15.70912 -15.28049 -14.92960 -14.83010 -14.57323 -14.27740 -14.08509 -13.80495 -13.52753 -13.31163 -13.18054 -13.14228 -12.60712 -12.49364 -12.18525 -12.15375 -11.81516 -11.37237 -11.16230 -10.76649 -10.70756 -10.55963 -10.52122 -10.45750 -10.29058 -10.21015 -10.16025 -9.91951 -9.64839 -9.58038 -9.48453 -9.12358 -8.84583 -8.42638 -6.89773 -5.72782 -3.00847 -0.28114 0.52320 1.39301 2.38852 2.91086 2.96419 3.45638 3.50825 3.52508 3.77331 3.84374 4.19340 4.38314 4.41384 4.52337 4.62314 4.76042 4.82391 4.92766 4.95552 4.99725 5.07777 5.15191 5.34565 5.45494 5.57885 5.61916 5.66999 5.72595 5.75839 5.77187 5.95728 6.00357 6.03837 6.10111 6.15330 6.16305 6.23617 6.27979 6.39601 6.41105 6.51747 6.56584 6.70093 6.80735 6.95564 7.14524 7.24046 7.53057 7.74592 8.04956 8.46562 9.57066 10.17087 10.51013 11.49873 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.001969 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.341758 B =14217.414050 C =14797.293326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.123 3.877 17 N -0.699 5.699 18 C 0.570 3.430 19 O -0.529 6.529 20 C 0.126 3.874 21 N -0.457 5.457 22 C 0.074 3.926 23 C -0.132 4.132 24 C -0.031 4.031 25 C -0.121 4.121 26 C -0.093 4.093 27 C -0.123 4.123 28 C -0.090 4.090 29 C -0.072 4.072 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.411 0.589 40 H 0.161 0.839 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.174 0.826 46 H 0.073 0.927 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 -28.693 -7.952 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.186 4.186 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.000 4.000 17 N -0.349 5.349 18 C 0.354 3.646 19 O -0.407 6.407 20 C -0.026 4.026 21 N -0.168 5.168 22 C -0.072 4.072 23 C -0.152 4.152 24 C -0.036 4.036 25 C -0.139 4.139 26 C -0.112 4.112 27 C -0.141 4.141 28 C -0.109 4.109 29 C -0.075 4.075 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.247 0.753 40 H 0.178 0.822 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.191 0.809 46 H 0.091 0.909 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.926 -27.827 -7.446 29.409 hybrid contribution -0.221 0.182 -0.612 0.676 sum -6.147 -27.644 -8.058 29.444 Atomic orbital electron populations 1.69657 1.05069 1.25581 1.57819 1.24742 0.95501 0.97650 1.03215 0.86212 0.78641 0.84022 0.77452 1.21826 1.21852 1.20821 1.19260 0.90997 0.84236 1.42390 0.91236 1.42545 1.05660 0.99705 1.88264 1.20806 0.94117 0.86067 0.92639 0.93382 1.23116 0.96056 0.98627 1.00846 1.22503 0.99959 0.97407 0.95199 1.22240 0.94508 0.97844 0.97635 0.90614 1.21662 0.98018 0.88436 0.91867 1.45923 1.13438 1.34785 1.40766 1.17731 0.83433 0.81304 0.82104 1.90602 1.37425 1.66450 1.46183 1.21414 0.90186 0.95690 0.95266 1.67270 1.28940 1.16973 1.03640 1.22194 0.98127 0.91125 0.95801 1.22154 0.93434 1.00513 0.99112 1.18206 0.95155 0.95127 0.95142 1.20925 0.92623 0.99886 1.00460 1.21097 0.98517 0.96969 0.94625 1.21153 0.98746 0.95499 0.98712 1.22223 0.91182 0.99401 0.98088 1.18701 0.95294 0.96081 0.97401 1.22466 1.01484 0.95396 0.96633 0.93563 0.78264 0.90995 0.93318 0.92811 0.91311 0.90524 0.91186 0.75275 0.82165 0.83976 0.84993 0.85485 0.85280 0.80897 0.90857 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.90 5.08 -52.34 -0.27 -18.16 16 10 C 0.17 3.39 3.55 -66.81 -0.24 3.15 16 11 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 12 C -0.15 -2.53 6.54 -25.07 -0.16 -2.70 16 13 C -0.11 -1.68 6.19 -24.74 -0.15 -1.83 16 14 C -0.10 -1.37 2.89 -88.96 -0.26 -1.62 16 15 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 16 C 0.12 1.62 4.96 -4.04 -0.02 1.60 16 17 N -0.70 -8.62 5.44 -61.21 -0.33 -8.96 16 18 C 0.57 7.78 7.78 -12.28 -0.10 7.68 16 19 O -0.53 -8.28 13.44 5.33 0.07 -8.21 16 20 C 0.13 1.56 6.81 -82.55 -0.56 1.00 16 21 N -0.46 -5.04 9.52 -9.81 -0.09 -5.13 16 22 C 0.07 0.61 11.06 -18.03 -0.20 0.41 16 23 C -0.13 -0.99 9.88 -39.28 -0.39 -1.37 16 24 C -0.03 -0.29 5.75 -106.83 -0.61 -0.91 16 25 C -0.12 -0.89 9.82 -39.53 -0.39 -1.28 16 26 C -0.09 -0.66 9.95 -39.89 -0.40 -1.06 16 27 C -0.12 -1.07 9.95 -39.87 -0.40 -1.46 16 28 C -0.09 -1.01 9.23 -39.60 -0.37 -1.38 16 29 C -0.07 -0.84 5.76 -106.60 -0.61 -1.45 16 30 C -0.12 -1.92 6.14 -25.61 -0.16 -2.08 16 31 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.38 10.17 7.52 -40.82 -0.31 9.86 16 33 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.15 7.97 -51.93 -0.41 0.74 16 37 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.41 4.52 7.81 -40.82 -0.32 4.20 16 40 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 42 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 43 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.17 2.19 4.96 -52.49 -0.26 1.93 16 46 H 0.07 1.27 7.31 -51.93 -0.38 0.89 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -32.56 385.96 -11.07 -43.62 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -6.71 Total: 11.69 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -5.26 Total: -10.56 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.03 Total: -59.89 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.07 Total: -8.21 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.56 -11.07 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086789385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.466 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds