Wall clock time and date at job start Tue Mar 31 2020 23:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47331 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47293 * 30.00165 * 3 2 1 6 6 H 1.48500 * 109.47231 * 150.00144 * 3 2 1 7 7 C 1.38822 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99479 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99607 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.01958 * 33.60569 * 10 9 7 12 12 C 1.54271 * 110.03261 * 272.16401 * 10 9 7 13 13 C 1.54891 * 104.19272 * 264.32694 * 12 10 9 14 14 C 1.54882 * 102.75031 * 322.05716 * 13 12 10 15 15 H 1.09008 * 110.59740 * 279.20774 * 14 13 12 16 16 C 1.53002 * 110.48822 * 156.62216 * 14 13 12 17 17 N 1.46507 * 109.46910 * 70.22362 * 16 14 13 18 18 C 1.34774 * 119.99617 * 180.27801 * 17 16 14 19 19 O 1.21542 * 120.00194 * 359.72395 * 18 17 16 20 20 C 1.47949 * 119.99671 * 179.72371 * 18 17 16 21 21 N 1.32203 * 120.15947 * 354.14392 * 20 18 17 22 22 C 1.32027 * 122.67885 * 179.74862 * 21 20 18 23 23 C 1.36685 * 122.02894 * 0.53326 * 22 21 20 24 24 C 1.40529 * 118.85026 * 359.74686 * 23 22 21 25 25 C 1.40318 * 122.23115 * 179.97438 * 24 23 22 26 26 C 1.36198 * 119.45833 * 180.02562 * 25 24 23 27 27 C 1.39382 * 121.00546 * 0.02562 * 26 25 24 28 28 C 1.36261 * 121.07509 * 359.97438 * 27 26 25 29 29 C 1.40092 * 119.53908 * 0.02562 * 28 27 26 30 30 C 1.53874 * 110.02999 * 154.99719 * 10 9 7 31 31 H 0.96995 * 120.00621 * 0.02562 * 1 2 3 32 32 H 0.96997 * 120.00332 * 359.97438 * 9 7 2 33 33 H 1.08998 * 110.47935 * 23.00517 * 12 10 9 34 34 H 1.09001 * 110.48504 * 145.51614 * 12 10 9 35 35 H 1.09001 * 110.75357 * 203.73940 * 13 12 10 36 36 H 1.09004 * 110.75450 * 80.37239 * 13 12 10 37 37 H 1.09001 * 109.47190 * 310.22663 * 16 14 13 38 38 H 1.09000 * 109.47131 * 190.22048 * 16 14 13 39 39 H 0.97000 * 119.99943 * 0.02562 * 17 16 14 40 40 H 1.07995 * 118.98536 * 180.25523 * 22 21 20 41 41 H 1.08003 * 120.57717 * 179.71930 * 23 22 21 42 42 H 1.08006 * 120.26805 * 0.02562 * 25 24 23 43 43 H 1.08003 * 119.50108 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.46239 * 179.97438 * 27 26 25 45 45 H 1.08007 * 120.22816 * 180.02562 * 28 27 26 46 46 H 1.08997 * 110.03364 * 359.97438 * 30 10 9 47 47 H 1.08999 * 110.03242 * 238.56208 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9830 -3.5532 0.5692 12 6 2.3709 -4.0877 -1.4462 13 6 1.2229 -5.0622 -1.8088 14 6 1.0001 -5.8355 -0.4855 15 1 1.7396 -6.6289 -0.3759 16 6 -0.4154 -6.4140 -0.4350 17 7 -0.5316 -7.5059 -1.4050 18 6 -1.6994 -8.1649 -1.5410 19 8 -2.6545 -7.8567 -0.8555 20 6 -1.8185 -9.2634 -2.5249 21 7 -0.8209 -9.5255 -3.3519 22 6 -0.8719 -10.4962 -4.2453 23 6 -1.9715 -11.2960 -4.3848 24 6 -3.0784 -11.0792 -3.5466 25 6 -4.2433 -11.8572 -3.6289 26 6 -5.2830 -11.5975 -2.7885 27 6 -5.2075 -10.5708 -1.8488 28 6 -4.0917 -9.7960 -1.7417 29 6 -3.0019 -10.0336 -2.5894 30 6 1.1866 -4.7681 0.6125 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.3628 -3.2242 -2.1113 34 1 3.3343 -4.5955 -1.4934 35 1 1.5288 -5.7401 -2.6057 36 1 0.3246 -4.5129 -2.0912 37 1 -1.1359 -5.6333 -0.6788 38 1 -0.6169 -6.7946 0.5663 39 1 0.2308 -7.7520 -1.9518 40 1 -0.0202 -10.6606 -4.8886 41 1 -1.9896 -12.0806 -5.1268 42 1 -4.3147 -12.6555 -4.3529 43 1 -6.1801 -12.1956 -2.8515 44 1 -6.0470 -10.3862 -1.1950 45 1 -4.0477 -9.0043 -1.0084 46 1 0.2188 -4.3634 0.9085 47 1 1.6888 -5.2044 1.4759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086789385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:39 Heat of formation + Delta-G solvation = 5.419654 kcal Electronic energy + Delta-G solvation = -27935.953959 eV Core-core repulsion = 24082.421202 eV Total energy + Delta-G solvation = -3853.532758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.17112 -40.51749 -39.40738 -38.37386 -36.35899 -34.99495 -34.00415 -32.53583 -32.16789 -30.95380 -30.09780 -28.84788 -26.59253 -25.42915 -24.80706 -24.49506 -23.55165 -21.98898 -21.09435 -20.70013 -19.30581 -19.05458 -18.48650 -18.14917 -17.33218 -16.79231 -16.74816 -16.67568 -16.24201 -15.91582 -15.53563 -15.37443 -15.19377 -15.03156 -14.68705 -14.46449 -14.22534 -14.19356 -13.88096 -13.54074 -13.17508 -13.11305 -12.95687 -12.75239 -12.52386 -12.47624 -12.32786 -12.14885 -11.92472 -11.72825 -11.61049 -11.49769 -11.40953 -11.20586 -11.10028 -10.88951 -10.50805 -10.20678 -10.13009 -9.07310 -8.95513 -7.92308 -5.19714 -0.99020 -0.12886 0.68630 1.46405 1.48178 1.56525 1.59900 1.96119 2.19680 2.57393 3.04943 3.08733 3.39389 3.59666 3.64758 3.69444 3.79769 3.80902 3.85683 3.90368 4.17869 4.21344 4.27664 4.41654 4.42352 4.47529 4.54070 4.59125 4.68695 4.73214 4.78509 4.81702 4.86251 4.92809 5.04851 5.09169 5.11097 5.13855 5.23062 5.32916 5.40001 5.44854 5.50628 5.53279 5.58477 5.63393 5.66849 5.89806 6.31097 6.33258 6.74857 7.07814 7.35571 8.15966 8.36895 9.31432 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.001969 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.341758 B =14217.414050 C =14797.293326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.734 5.734 10 C 0.162 3.838 11 H 0.046 0.954 12 C -0.138 4.138 13 C -0.107 4.107 14 C -0.084 4.084 15 H 0.108 0.892 16 C 0.131 3.869 17 N -0.691 5.691 18 C 0.564 3.436 19 O -0.561 6.561 20 C 0.090 3.910 21 N -0.462 5.462 22 C 0.054 3.946 23 C -0.107 4.107 24 C -0.054 4.054 25 C -0.109 4.109 26 C -0.100 4.100 27 C -0.115 4.115 28 C -0.130 4.130 29 C -0.087 4.087 30 C -0.115 4.115 31 H 0.249 0.751 32 H 0.370 0.630 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.419 0.581 40 H 0.193 0.807 41 H 0.186 0.814 42 H 0.170 0.830 43 H 0.161 0.839 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.052 0.948 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 -32.311 -9.816 34.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.374 5.374 10 C 0.053 3.947 11 H 0.064 0.936 12 C -0.178 4.178 13 C -0.144 4.144 14 C -0.103 4.103 15 H 0.126 0.874 16 C 0.007 3.993 17 N -0.342 5.342 18 C 0.350 3.650 19 O -0.441 6.441 20 C -0.061 4.061 21 N -0.174 5.174 22 C -0.092 4.092 23 C -0.126 4.126 24 C -0.059 4.059 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.133 4.133 28 C -0.150 4.150 29 C -0.091 4.091 30 C -0.154 4.154 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.210 0.790 41 H 0.203 0.797 42 H 0.188 0.812 43 H 0.179 0.821 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.071 0.929 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.806 -31.483 -9.311 33.181 hybrid contribution -0.569 1.129 -0.106 1.269 sum -5.374 -30.354 -9.417 32.233 Atomic orbital electron populations 1.69827 1.06635 1.25829 1.60059 1.25565 0.96360 1.01109 1.04340 0.85158 0.77744 0.79707 0.77298 1.21643 1.22455 1.19300 1.19660 0.91433 0.85391 1.40168 0.90623 1.42768 1.05233 1.01019 1.88387 1.21139 0.94126 0.85052 0.94345 0.93578 1.22954 0.98470 0.98196 0.98216 1.22432 0.97839 0.97228 0.96910 1.22107 0.95139 0.97572 0.95452 0.87363 1.21448 0.97410 0.88130 0.92263 1.45791 1.13571 1.34243 1.40587 1.18114 0.83104 0.81613 0.82135 1.90593 1.38414 1.67519 1.47530 1.21129 0.91602 0.96660 0.96663 1.67206 1.28595 1.17853 1.03756 1.22812 0.99819 0.90786 0.95807 1.22647 0.91771 1.00073 0.98116 1.18595 0.96951 0.95083 0.95265 1.21402 0.91324 0.99595 1.00318 1.21469 0.99954 0.96618 0.93889 1.21445 0.98021 0.94988 0.98803 1.22063 0.92970 1.00663 0.99260 1.18894 0.94996 0.96939 0.98221 1.22371 0.99920 0.95001 0.98126 0.94241 0.79821 0.94314 0.90334 0.89938 0.94091 0.93161 0.90983 0.74318 0.78977 0.79720 0.81242 0.82147 0.83835 0.83502 0.92917 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.31 13.06 21.65 0.28 -61.02 16 2 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.23 -13.23 9.96 84.04 0.84 -12.40 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -37.63 5.08 -319.49 -1.62 -39.25 16 10 C 0.16 6.30 3.55 45.72 0.16 6.47 16 11 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 12 C -0.14 -4.71 6.54 31.67 0.21 -4.50 16 13 C -0.11 -3.09 6.19 31.88 0.20 -2.89 16 14 C -0.08 -2.13 2.89 -9.72 -0.03 -2.16 16 15 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 16 C 0.13 3.56 4.96 86.38 0.43 3.98 16 17 N -0.69 -17.43 5.44 -465.85 -2.53 -19.96 16 18 C 0.56 16.43 7.78 86.82 0.68 17.10 16 19 O -0.56 -19.31 13.44 -3.85 -0.05 -19.37 16 20 C 0.09 2.29 6.81 42.43 0.29 2.58 16 21 N -0.46 -9.81 9.52 -184.95 -1.76 -11.57 16 22 C 0.05 0.77 11.06 84.30 0.93 1.70 16 23 C -0.11 -1.21 9.88 22.47 0.22 -0.98 16 24 C -0.05 -0.89 5.75 -21.29 -0.12 -1.01 16 25 C -0.11 -1.21 9.82 22.30 0.22 -0.99 16 26 C -0.10 -1.16 9.95 22.07 0.22 -0.94 16 27 C -0.11 -1.94 9.95 22.08 0.22 -1.72 16 28 C -0.13 -3.13 9.23 22.26 0.21 -2.93 16 29 C -0.09 -2.07 5.76 -21.14 -0.12 -2.20 16 30 C -0.12 -3.63 6.14 31.32 0.19 -3.44 16 31 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.37 20.66 7.52 -92.71 -0.70 19.97 16 33 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.42 7.97 -2.38 -0.02 1.40 16 37 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.42 8.94 7.81 -92.71 -0.72 8.22 16 40 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.19 0.44 8.06 -2.91 -0.02 0.41 16 42 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 43 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.15 4.24 4.96 -3.01 -0.01 4.22 16 46 H 0.05 1.89 7.31 -2.39 -0.02 1.88 16 47 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -75.91 385.96 1.13 -74.78 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.42 Total: 35.80 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.20 Total: -8.70 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -5.63 Total: -131.81 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.91 1.13 -74.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086789385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.201 kcal (2) G-P(sol) polarization free energy of solvation -75.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds