Wall clock time and date at job start Tue Mar 31 2020 22:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47201 * 239.99420 * 3 2 1 5 5 H 1.48493 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47275 * 119.99736 * 3 2 1 7 7 C 1.38813 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.01673 * 33.61095 * 10 9 7 12 12 C 1.54259 * 110.03352 * 272.17199 * 10 9 7 13 13 C 1.54896 * 104.19562 * 264.32120 * 12 10 9 14 14 C 1.54885 * 102.74644 * 322.05964 * 13 12 10 15 15 H 1.09003 * 110.60087 * 279.20178 * 14 13 12 16 16 C 1.53001 * 110.48633 * 156.61951 * 14 13 12 17 17 N 1.46499 * 109.47336 * 70.21997 * 16 14 13 18 18 C 1.34780 * 119.99933 * 180.02562 * 17 16 14 19 19 O 1.21585 * 120.00246 * 0.02562 * 18 17 16 20 20 C 1.47566 * 119.99678 * 180.02562 * 18 17 16 21 21 C 1.38704 * 120.43284 * 354.12469 * 20 18 17 22 22 C 1.39003 * 120.74898 * 179.72283 * 21 20 18 23 23 C 1.36347 * 121.19167 * 0.28321 * 22 21 20 24 24 C 1.40356 * 119.93022 * 359.97438 * 23 22 21 25 25 C 1.40675 * 122.10522 * 179.97438 * 24 23 22 26 26 C 1.36268 * 118.66635 * 180.02562 * 25 24 23 27 27 N 1.32502 * 121.83961 * 359.97438 * 26 25 24 28 28 C 1.31312 * 122.72499 * 0.02562 * 27 26 25 29 29 C 1.40147 * 119.91500 * 359.97438 * 28 27 26 30 30 C 1.53873 * 110.03402 * 155.00037 * 10 9 7 31 31 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00567 * 0.02562 * 9 7 2 33 33 H 1.09000 * 110.49252 * 22.99987 * 12 10 9 34 34 H 1.08999 * 110.49014 * 145.51555 * 12 10 9 35 35 H 1.08996 * 110.75624 * 203.74119 * 13 12 10 36 36 H 1.09005 * 110.75259 * 80.37158 * 13 12 10 37 37 H 1.09009 * 109.46859 * 310.22255 * 16 14 13 38 38 H 1.09001 * 109.47357 * 190.22507 * 16 14 13 39 39 H 0.96996 * 119.99402 * 0.02562 * 17 16 14 40 40 H 1.07993 * 119.62872 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.40801 * 180.29880 * 22 21 20 42 42 H 1.07996 * 120.03597 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.67278 * 0.02562 * 25 24 23 44 44 H 1.07996 * 119.08023 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.04944 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.03118 * 0.02562 * 30 10 9 47 47 H 1.08997 * 110.03635 * 238.57375 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9833 -3.5535 0.5675 12 6 2.3698 -4.0870 -1.4477 13 6 1.2215 -5.0614 -1.8101 14 6 0.9997 -5.8353 -0.4869 15 1 1.7391 -6.6287 -0.3781 16 6 -0.4158 -6.4138 -0.4358 17 7 -0.5328 -7.5051 -1.4061 18 6 -1.6992 -8.1674 -1.5381 19 8 -2.6545 -7.8589 -0.8522 20 6 -1.8168 -9.2670 -2.5151 21 6 -0.7744 -9.5474 -3.3861 22 6 -0.8758 -10.5852 -4.3052 23 6 -2.0002 -11.3526 -4.3825 24 6 -3.0810 -11.0998 -3.5235 25 6 -4.2625 -11.8623 -3.5641 26 6 -5.2686 -11.5554 -2.6977 27 7 -5.1613 -10.5645 -1.8246 28 6 -4.0885 -9.8130 -1.7320 29 6 -2.9963 -10.0466 -2.5786 30 6 1.1869 -4.7684 0.6115 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 2.3613 -3.2233 -2.1125 34 1 3.3331 -4.5948 -1.4959 35 1 1.5270 -5.7389 -2.6074 36 1 0.3231 -4.5119 -2.0915 37 1 -1.1365 -5.6328 -0.6787 38 1 -0.6167 -6.7948 0.5655 39 1 0.2292 -7.7509 -1.9536 40 1 0.1282 -8.9557 -3.3466 41 1 -0.0491 -10.7877 -4.9699 42 1 -2.0591 -12.1541 -5.1040 43 1 -4.3702 -12.6745 -4.2677 44 1 -6.1784 -12.1367 -2.7228 45 1 -4.0473 -9.0165 -1.0037 46 1 0.2189 -4.3639 0.9076 47 1 1.6897 -5.2051 1.4744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086842486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:54 Heat of formation + Delta-G solvation = 25.681300 kcal Electronic energy + Delta-G solvation = -27938.277666 eV Core-core repulsion = 24085.623519 eV Total energy + Delta-G solvation = -3852.654147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40354 -39.71268 -38.18770 -37.53337 -35.10587 -33.48009 -33.17355 -31.55146 -30.93383 -30.05928 -28.87518 -27.34417 -25.24449 -24.38905 -23.83374 -23.29088 -22.92119 -21.00852 -19.92734 -19.24096 -18.27664 -18.13575 -17.11087 -17.08024 -16.58929 -16.09491 -15.68150 -15.35759 -15.11939 -14.87191 -14.61319 -14.38296 -14.03393 -13.89187 -13.56504 -13.33645 -13.23694 -13.07377 -12.65695 -12.48131 -12.47252 -12.21309 -11.96916 -11.42508 -11.22680 -10.83850 -10.73640 -10.62324 -10.53555 -10.51366 -10.29194 -10.23532 -10.07512 -9.91138 -9.63300 -9.60344 -9.54518 -9.23899 -8.87660 -8.46634 -6.93485 -5.75552 -3.04060 -0.27223 0.50223 1.28887 2.37867 2.87608 2.97929 3.43924 3.48552 3.49713 3.77679 4.10470 4.16986 4.27666 4.38316 4.47440 4.54133 4.59406 4.68033 4.82366 4.89699 4.92389 5.05524 5.16975 5.32438 5.34216 5.51074 5.53789 5.54136 5.66150 5.69942 5.71789 5.73700 5.88035 5.91368 5.98055 6.04412 6.07990 6.17848 6.24080 6.29160 6.32042 6.44575 6.48089 6.63967 6.72613 6.89861 7.08673 7.25172 7.71025 7.75110 7.97237 8.43662 9.54145 10.13587 10.47406 11.46904 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.001964 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.397965 B =14255.030251 C =14845.300899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.104 4.104 15 H 0.075 0.925 16 C 0.124 3.876 17 N -0.714 5.714 18 C 0.557 3.443 19 O -0.529 6.529 20 C -0.098 4.098 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.087 4.087 24 C -0.030 4.030 25 C -0.165 4.165 26 C 0.079 3.921 27 N -0.489 5.489 28 C 0.146 3.854 29 C -0.080 4.080 30 C -0.121 4.121 31 H 0.256 0.744 32 H 0.383 0.617 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.153 0.847 45 H 0.201 0.799 46 H 0.073 0.927 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 -27.724 -9.559 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.093 0.907 16 C 0.002 3.998 17 N -0.365 5.365 18 C 0.344 3.656 19 O -0.408 6.408 20 C -0.103 4.103 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.106 4.106 24 C -0.035 4.035 25 C -0.184 4.184 26 C -0.065 4.065 27 N -0.197 5.197 28 C -0.024 4.024 29 C -0.083 4.083 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.235 0.765 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.170 0.830 45 H 0.217 0.783 46 H 0.092 0.908 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.254 -27.260 -8.523 28.746 hybrid contribution 1.329 0.567 -1.091 1.811 sum -1.925 -26.693 -9.613 28.437 Atomic orbital electron populations 1.69651 1.05072 1.25755 1.57581 1.24746 0.95502 0.97666 1.03089 0.86288 0.78519 0.83700 0.77788 1.21352 1.21740 1.21314 1.19204 0.90955 0.84232 1.42733 0.91294 1.42537 1.05656 0.99681 1.88281 1.20797 0.94145 0.86104 0.92574 0.93372 1.23122 0.95956 0.98635 1.00974 1.22511 1.00084 0.97424 0.95063 1.22249 0.94500 0.97859 0.97671 0.90688 1.21639 0.97919 0.88400 0.91888 1.45962 1.13225 1.35770 1.41557 1.18072 0.83176 0.81747 0.82624 1.90597 1.37118 1.66810 1.46303 1.19934 0.94770 0.97273 0.98285 1.21456 0.97690 0.96746 0.93962 1.20920 0.98410 0.94941 0.98351 1.21179 0.92384 0.99278 0.97712 1.18170 0.95107 0.94901 0.95368 1.21879 0.93747 1.01151 1.01657 1.22353 0.98556 0.94217 0.91326 1.67687 1.26114 1.05168 1.20724 1.24660 0.86116 0.96087 0.95491 1.18866 0.95492 0.96109 0.97793 1.22470 1.01555 0.95373 0.96621 0.93465 0.78247 0.90954 0.93340 0.93067 0.91206 0.90477 0.91143 0.76498 0.84873 0.84671 0.84665 0.84386 0.83008 0.78291 0.90801 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.53 5.08 -52.34 -0.27 -17.79 16 10 C 0.17 3.27 3.55 -66.82 -0.24 3.04 16 11 H 0.05 0.93 8.09 -51.92 -0.42 0.51 16 12 C -0.15 -2.40 6.54 -25.07 -0.16 -2.56 16 13 C -0.11 -1.52 6.19 -24.74 -0.15 -1.67 16 14 C -0.10 -1.25 2.89 -88.96 -0.26 -1.50 16 15 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 16 C 0.12 1.50 4.96 -4.04 -0.02 1.48 16 17 N -0.71 -7.26 5.40 -61.34 -0.33 -7.59 16 18 C 0.56 6.71 7.73 -12.45 -0.10 6.62 16 19 O -0.53 -8.06 13.47 5.29 0.07 -7.99 16 20 C -0.10 -1.00 5.90 -104.67 -0.62 -1.62 16 21 C -0.08 -0.57 9.51 -39.13 -0.37 -0.94 16 22 C -0.11 -0.63 9.93 -39.98 -0.40 -1.03 16 23 C -0.09 -0.57 9.79 -39.47 -0.39 -0.96 16 24 C -0.03 -0.28 5.74 -106.84 -0.61 -0.89 16 25 C -0.16 -1.33 9.88 -39.37 -0.39 -1.72 16 26 C 0.08 0.75 11.07 -17.97 -0.20 0.55 16 27 N -0.49 -6.17 10.30 -13.21 -0.14 -6.31 16 28 C 0.15 1.89 10.49 -17.06 -0.18 1.71 16 29 C -0.08 -0.91 5.76 -106.59 -0.61 -1.52 16 30 C -0.12 -1.84 6.14 -25.61 -0.16 -2.00 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.38 9.99 7.52 -40.82 -0.31 9.69 16 33 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.08 7.97 -51.93 -0.41 0.67 16 37 H 0.08 1.09 8.02 -51.92 -0.42 0.68 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.40 2.95 6.51 -40.82 -0.27 2.69 16 40 H 0.13 0.62 6.42 -52.49 -0.34 0.28 16 41 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.20 2.80 4.97 -52.49 -0.26 2.54 16 46 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -33.29 383.63 -10.85 -44.14 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.57 Total: 10.06 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -5.10 Total: -10.23 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.01 Total: -59.03 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.07 Total: -7.99 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.29 -10.85 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086842486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.822 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds