Wall clock time and date at job start Tue Mar 31 2020 22:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47201 * 239.99420 * 3 2 1 5 5 H 1.48493 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47275 * 119.99736 * 3 2 1 7 7 C 1.38813 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.01673 * 33.61095 * 10 9 7 12 12 C 1.54259 * 110.03352 * 272.17199 * 10 9 7 13 13 C 1.54896 * 104.19562 * 264.32120 * 12 10 9 14 14 C 1.54885 * 102.74644 * 322.05964 * 13 12 10 15 15 H 1.09003 * 110.60087 * 279.20178 * 14 13 12 16 16 C 1.53001 * 110.48633 * 156.61951 * 14 13 12 17 17 N 1.46499 * 109.47336 * 70.21997 * 16 14 13 18 18 C 1.34780 * 119.99933 * 180.02562 * 17 16 14 19 19 O 1.21585 * 120.00246 * 0.02562 * 18 17 16 20 20 C 1.47566 * 119.99678 * 180.02562 * 18 17 16 21 21 C 1.38704 * 120.43284 * 354.12469 * 20 18 17 22 22 C 1.39003 * 120.74898 * 179.72283 * 21 20 18 23 23 C 1.36347 * 121.19167 * 0.28321 * 22 21 20 24 24 C 1.40356 * 119.93022 * 359.97438 * 23 22 21 25 25 C 1.40675 * 122.10522 * 179.97438 * 24 23 22 26 26 C 1.36268 * 118.66635 * 180.02562 * 25 24 23 27 27 N 1.32502 * 121.83961 * 359.97438 * 26 25 24 28 28 C 1.31312 * 122.72499 * 0.02562 * 27 26 25 29 29 C 1.40147 * 119.91500 * 359.97438 * 28 27 26 30 30 C 1.53873 * 110.03402 * 155.00037 * 10 9 7 31 31 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00567 * 0.02562 * 9 7 2 33 33 H 1.09000 * 110.49252 * 22.99987 * 12 10 9 34 34 H 1.08999 * 110.49014 * 145.51555 * 12 10 9 35 35 H 1.08996 * 110.75624 * 203.74119 * 13 12 10 36 36 H 1.09005 * 110.75259 * 80.37158 * 13 12 10 37 37 H 1.09009 * 109.46859 * 310.22255 * 16 14 13 38 38 H 1.09001 * 109.47357 * 190.22507 * 16 14 13 39 39 H 0.96996 * 119.99402 * 0.02562 * 17 16 14 40 40 H 1.07993 * 119.62872 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.40801 * 180.29880 * 22 21 20 42 42 H 1.07996 * 120.03597 * 179.97438 * 23 22 21 43 43 H 1.07998 * 120.67278 * 0.02562 * 25 24 23 44 44 H 1.07996 * 119.08023 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.04944 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.03118 * 0.02562 * 30 10 9 47 47 H 1.08997 * 110.03635 * 238.57375 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9833 -3.5535 0.5675 12 6 2.3698 -4.0870 -1.4477 13 6 1.2215 -5.0614 -1.8101 14 6 0.9997 -5.8353 -0.4869 15 1 1.7391 -6.6287 -0.3781 16 6 -0.4158 -6.4138 -0.4358 17 7 -0.5328 -7.5051 -1.4061 18 6 -1.6992 -8.1674 -1.5381 19 8 -2.6545 -7.8589 -0.8522 20 6 -1.8168 -9.2670 -2.5151 21 6 -0.7744 -9.5474 -3.3861 22 6 -0.8758 -10.5852 -4.3052 23 6 -2.0002 -11.3526 -4.3825 24 6 -3.0810 -11.0998 -3.5235 25 6 -4.2625 -11.8623 -3.5641 26 6 -5.2686 -11.5554 -2.6977 27 7 -5.1613 -10.5645 -1.8246 28 6 -4.0885 -9.8130 -1.7320 29 6 -2.9963 -10.0466 -2.5786 30 6 1.1869 -4.7684 0.6115 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 2.3613 -3.2233 -2.1125 34 1 3.3331 -4.5948 -1.4959 35 1 1.5270 -5.7389 -2.6074 36 1 0.3231 -4.5119 -2.0915 37 1 -1.1365 -5.6328 -0.6787 38 1 -0.6167 -6.7948 0.5655 39 1 0.2292 -7.7509 -1.9536 40 1 0.1282 -8.9557 -3.3466 41 1 -0.0491 -10.7877 -4.9699 42 1 -2.0591 -12.1541 -5.1040 43 1 -4.3702 -12.6745 -4.2677 44 1 -6.1784 -12.1367 -2.7228 45 1 -4.0473 -9.0165 -1.0037 46 1 0.2189 -4.3639 0.9076 47 1 1.6897 -5.2051 1.4744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086842486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:53 Heat of formation + Delta-G solvation = 3.905237 kcal Electronic energy + Delta-G solvation = -27939.221947 eV Core-core repulsion = 24085.623519 eV Total energy + Delta-G solvation = -3853.598428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11097 -40.61705 -39.42736 -38.19724 -36.37492 -35.03215 -33.97717 -32.55395 -32.17712 -31.05868 -29.98033 -28.78869 -26.25733 -25.41780 -24.97541 -24.46150 -23.81671 -21.89382 -21.03120 -20.66475 -19.19214 -18.94157 -18.80543 -17.81854 -17.35550 -17.00489 -16.69423 -16.63939 -16.15317 -15.99480 -15.63536 -15.33580 -15.18568 -15.05888 -14.64495 -14.52841 -14.26657 -14.19287 -13.72638 -13.52818 -13.16217 -13.04355 -13.00673 -12.93141 -12.55206 -12.44946 -12.37211 -12.16576 -11.92737 -11.70667 -11.60720 -11.48622 -11.38292 -11.19542 -10.92201 -10.86866 -10.40262 -10.20271 -10.16719 -9.10098 -8.95023 -7.92167 -5.19549 -0.91936 -0.12376 0.56927 1.46443 1.49356 1.55498 1.71290 2.02173 2.21374 2.57574 3.07553 3.39265 3.45939 3.54802 3.64668 3.73951 3.75999 3.80681 3.84282 3.87497 3.95224 4.20190 4.22692 4.39443 4.43172 4.54617 4.58960 4.63987 4.70435 4.71247 4.80235 4.81627 4.85385 4.88851 4.95281 5.04809 5.10874 5.16574 5.19715 5.24806 5.34837 5.35833 5.46715 5.53258 5.59954 5.67123 5.69367 5.78776 6.31197 6.45417 6.99616 7.15038 7.35652 8.16726 8.36890 9.31309 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021914 B = 0.001964 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.397965 B =14255.030251 C =14845.300899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.160 3.840 11 H 0.044 0.956 12 C -0.139 4.139 13 C -0.106 4.106 14 C -0.083 4.083 15 H 0.114 0.886 16 C 0.132 3.868 17 N -0.700 5.700 18 C 0.552 3.448 19 O -0.574 6.574 20 C -0.133 4.133 21 C -0.056 4.056 22 C -0.107 4.107 23 C -0.074 4.074 24 C -0.052 4.052 25 C -0.143 4.143 26 C 0.050 3.950 27 N -0.517 5.517 28 C 0.109 3.891 29 C -0.094 4.094 30 C -0.118 4.118 31 H 0.249 0.751 32 H 0.369 0.631 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.417 0.583 40 H 0.163 0.837 41 H 0.177 0.823 42 H 0.173 0.827 43 H 0.180 0.820 44 H 0.176 0.824 45 H 0.174 0.826 46 H 0.048 0.952 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -31.161 -12.348 33.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.052 3.948 11 H 0.062 0.938 12 C -0.179 4.179 13 C -0.144 4.144 14 C -0.102 4.102 15 H 0.132 0.868 16 C 0.009 3.991 17 N -0.351 5.351 18 C 0.341 3.659 19 O -0.456 6.456 20 C -0.138 4.138 21 C -0.075 4.075 22 C -0.126 4.126 23 C -0.091 4.091 24 C -0.057 4.057 25 C -0.162 4.162 26 C -0.094 4.094 27 N -0.226 5.226 28 C -0.060 4.060 29 C -0.097 4.097 30 C -0.157 4.157 31 H 0.057 0.943 32 H 0.201 0.799 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.255 0.745 40 H 0.181 0.819 41 H 0.194 0.806 42 H 0.191 0.809 43 H 0.197 0.803 44 H 0.193 0.807 45 H 0.190 0.810 46 H 0.067 0.933 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.044 -30.743 -11.328 32.764 hybrid contribution 0.421 1.489 -0.295 1.575 sum 0.377 -29.254 -11.623 31.480 Atomic orbital electron populations 1.69826 1.06646 1.25886 1.60005 1.25562 0.96335 1.01120 1.04344 0.85239 0.77145 0.79392 0.78180 1.20380 1.22559 1.20413 1.19618 0.91415 0.85412 1.40273 0.90619 1.42772 1.05215 1.01064 1.88438 1.21160 0.94030 0.85002 0.94608 0.93786 1.22949 0.98702 0.98327 0.97910 1.22461 0.97684 0.97300 0.96953 1.22115 0.95112 0.97562 0.95363 0.86801 1.21369 0.97316 0.88218 0.92243 1.45722 1.13448 1.34776 1.41201 1.18514 0.82821 0.82054 0.82516 1.90594 1.38704 1.68178 1.48156 1.19789 0.96142 0.97876 1.00027 1.21900 0.97156 0.96419 0.92018 1.21412 0.99370 0.93736 0.98083 1.21657 0.91147 0.99602 0.96743 1.18554 0.96767 0.94654 0.95749 1.22333 0.92357 1.00831 1.00641 1.22802 1.00443 0.94288 0.91851 1.67555 1.26514 1.06259 1.22240 1.24301 0.87803 0.96919 0.96996 1.18984 0.95279 0.97285 0.98175 1.22386 0.99729 0.95227 0.98346 0.94264 0.79878 0.94439 0.90129 0.88968 0.94190 0.93571 0.91556 0.74469 0.81943 0.80609 0.80925 0.80304 0.80705 0.80970 0.93296 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.06 9.96 84.03 0.84 -12.23 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.73 -36.87 5.08 -319.51 -1.62 -38.49 16 10 C 0.16 5.97 3.55 45.71 0.16 6.14 16 11 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 12 C -0.14 -4.33 6.54 31.67 0.21 -4.12 16 13 C -0.11 -2.64 6.19 31.89 0.20 -2.45 16 14 C -0.08 -1.81 2.89 -9.72 -0.03 -1.84 16 15 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 16 C 0.13 3.18 4.96 86.38 0.43 3.61 16 17 N -0.70 -13.44 5.40 -466.23 -2.52 -15.96 16 18 C 0.55 13.77 7.73 86.70 0.67 14.44 16 19 O -0.57 -19.38 13.47 -3.98 -0.05 -19.43 16 20 C -0.13 -2.67 5.90 -19.89 -0.12 -2.78 16 21 C -0.06 -0.60 9.51 22.56 0.21 -0.38 16 22 C -0.11 -0.69 9.93 22.01 0.22 -0.48 16 23 C -0.07 -0.61 9.79 22.34 0.22 -0.40 16 24 C -0.05 -0.85 5.74 -21.30 -0.12 -0.97 16 25 C -0.14 -1.97 9.88 22.41 0.22 -1.74 16 26 C 0.05 0.94 11.07 84.13 0.93 1.87 16 27 N -0.52 -14.16 10.30 -195.72 -2.02 -16.17 16 28 C 0.11 3.13 10.49 85.23 0.89 4.03 16 29 C -0.09 -2.19 5.76 -21.14 -0.12 -2.31 16 30 C -0.12 -3.52 6.14 31.32 0.19 -3.32 16 31 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.37 20.31 7.52 -92.71 -0.70 19.62 16 33 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.24 7.97 -2.38 -0.02 1.22 16 37 H 0.05 1.41 8.02 -2.38 -0.02 1.39 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.42 4.72 6.51 -92.71 -0.60 4.11 16 40 H 0.16 0.66 6.42 -2.91 -0.02 0.64 16 41 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 42 H 0.17 0.15 8.06 -2.91 -0.02 0.12 16 43 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 44 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 45 H 0.17 5.73 4.97 -2.93 -0.01 5.71 16 46 H 0.05 1.71 7.31 -2.38 -0.02 1.70 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -80.71 383.63 1.28 -79.43 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.29 Total: 29.68 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.47 Total: -7.23 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -5.87 Total: -131.19 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -80.71 1.28 -79.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086842486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.334 kcal (2) G-P(sol) polarization free energy of solvation -80.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds