Wall clock time and date at job start Tue Mar 31 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48496 * 109.46993 * 240.00293 * 3 2 1 5 5 H 1.48503 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46957 * 119.99807 * 3 2 1 7 7 C 1.38804 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99851 * 173.96189 * 7 2 1 9 9 N 1.36943 * 120.00072 * 353.96661 * 7 2 1 10 10 C 1.44320 * 116.35034 * 334.75579 * 9 7 2 11 11 C 1.51602 * 113.11205 * 187.25895 * 10 9 7 12 12 C 1.52880 * 111.55698 * 320.91931 * 11 10 9 13 13 H 1.08999 * 112.86103 * 294.18847 * 12 11 10 14 14 C 1.56206 * 106.67237 * 168.35233 * 12 11 10 15 15 N 1.47754 * 104.00481 * 286.45820 * 14 12 11 16 16 C 1.34775 * 125.81917 * 154.06576 * 15 14 12 17 17 O 1.21573 * 120.00183 * 5.09654 * 16 15 14 18 18 C 1.47660 * 119.99837 * 185.10364 * 16 15 14 19 19 C 1.40206 * 119.97069 * 171.86322 * 18 16 15 20 20 C 1.36320 * 120.66888 * 179.97438 * 19 18 16 21 21 C 1.39366 * 120.23430 * 0.08470 * 20 19 18 22 22 N 1.37398 * 133.24614 * 179.97438 * 21 20 19 23 23 H 0.96998 * 125.00736 * 0.02562 * 22 21 20 24 24 C 1.36864 * 109.98194 * 179.97438 * 22 21 20 25 25 C 1.34194 * 109.95888 * 0.23252 * 24 22 21 26 26 C 1.40875 * 119.64177 * 359.93523 * 21 20 19 27 27 C 1.39145 * 119.97512 * 351.87686 * 18 16 15 28 28 C 1.47622 * 108.36298 * 333.80399 * 15 14 12 29 29 C 1.53569 * 106.34297 * 0.86108 * 28 15 14 30 30 H 1.09002 * 108.71129 * 270.18984 * 29 28 15 31 31 C 1.43997 * 116.35683 * 154.74169 * 9 7 2 32 32 H 0.97002 * 120.00100 * 359.97438 * 1 2 3 33 33 H 1.09002 * 108.76100 * 308.19599 * 10 9 7 34 34 H 1.09002 * 108.75720 * 66.32576 * 10 9 7 35 35 H 1.09001 * 109.06507 * 81.45645 * 11 10 9 36 36 H 1.09006 * 109.06795 * 200.45507 * 11 10 9 37 37 H 1.09003 * 110.62102 * 167.80469 * 14 12 11 38 38 H 1.08996 * 110.49002 * 45.04981 * 14 12 11 39 39 H 1.08006 * 119.66876 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.88050 * 180.02562 * 20 19 18 41 41 H 1.07992 * 125.01821 * 179.97438 * 24 22 21 42 42 H 1.07990 * 126.54100 * 179.77599 * 25 24 22 43 43 H 1.08000 * 120.30328 * 359.97438 * 27 18 16 44 44 H 1.09001 * 110.08299 * 120.08116 * 28 15 14 45 45 H 1.09005 * 110.07972 * 241.58469 * 28 15 14 46 46 H 1.09000 * 108.15346 * 60.77877 * 31 9 7 47 47 H 1.09002 * 107.99066 * 304.09983 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0858 -1.2046 -0.0989 9 7 1.3312 -2.3848 0.1236 10 6 0.0536 -2.3229 0.7919 11 6 -0.5527 -3.6892 1.0446 12 6 -0.3170 -4.6349 -0.1333 13 1 -0.8353 -4.3204 -1.0391 14 6 -0.7082 -6.0659 0.3557 15 7 0.3973 -6.4504 1.2575 16 6 0.3150 -7.3291 2.2760 17 8 -0.7127 -7.9519 2.4601 18 6 1.4732 -7.5353 3.1686 19 6 1.3361 -8.3163 4.3248 20 6 2.3960 -8.5164 5.1585 21 6 3.6331 -7.9429 4.8708 22 7 4.8515 -7.9652 5.5055 23 1 5.0394 -8.4355 6.3328 24 6 5.7611 -7.2269 4.7978 25 6 5.1789 -6.7065 3.7065 26 6 3.7836 -7.1556 3.7122 27 6 2.6996 -6.9540 2.8616 28 6 1.6089 -5.7127 0.8486 29 6 1.1979 -4.8319 -0.3404 30 1 1.3464 -5.3960 -1.2612 31 6 1.9719 -3.5507 -0.4276 32 1 -0.4850 0.8400 0.0004 33 1 0.1820 -1.8144 1.7474 34 1 -0.6351 -1.7420 0.1783 35 1 -0.1036 -4.1178 1.9406 36 1 -1.6256 -3.5791 1.2022 37 1 -0.7715 -6.7554 -0.4862 38 1 -1.6525 -6.0384 0.8995 39 1 0.3811 -8.7640 4.5574 40 1 2.2762 -9.1207 6.0455 41 1 6.7936 -7.0811 5.0787 42 1 5.6493 -6.0787 2.9644 43 1 2.8097 -6.3517 1.9719 44 1 1.9634 -5.0906 1.6703 45 1 2.3883 -6.4120 0.5457 46 1 2.9218 -3.6919 0.0880 47 1 2.1844 -3.3530 -1.4783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088085886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:36 Heat of formation + Delta-G solvation = 86.866530 kcal Electronic energy + Delta-G solvation = -29800.579214 eV Core-core repulsion = 25950.578258 eV Total energy + Delta-G solvation = -3850.000956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47150 -40.36859 -38.39012 -36.54023 -35.63727 -32.88330 -32.09698 -31.48004 -30.36272 -29.64783 -28.99966 -27.64194 -25.80721 -24.13944 -23.16430 -22.28148 -21.84192 -21.27729 -20.96174 -19.44490 -18.39886 -17.55623 -17.10910 -17.04582 -16.23344 -15.83365 -15.33114 -14.87758 -14.68190 -14.38979 -14.16342 -14.00972 -13.89544 -13.63659 -13.40689 -13.16626 -12.95577 -12.88297 -12.63649 -12.62527 -12.26657 -12.00589 -11.70108 -11.57761 -11.32368 -10.95757 -10.91830 -10.74814 -10.37056 -10.19850 -10.07421 -9.94692 -9.78200 -9.63664 -9.53160 -9.46767 -8.58004 -8.45888 -8.28200 -7.93330 -6.65333 -5.47206 -3.23179 0.89742 1.17701 2.55385 2.89935 2.99874 3.12700 3.39762 3.44958 3.45728 3.93128 4.43434 4.49841 4.57898 4.67343 4.77458 4.93426 5.00026 5.13858 5.16402 5.29352 5.39962 5.41155 5.45779 5.56078 5.60246 5.61305 5.70667 5.80925 5.89931 5.92828 5.99176 6.05653 6.17632 6.23417 6.28320 6.38945 6.44579 6.48779 6.56526 6.64084 6.70077 6.76709 6.85723 6.87914 6.94312 7.27549 7.54563 7.67704 7.83734 8.14193 8.32687 8.62538 9.37871 10.06008 10.30887 11.30557 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.003493 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.819763 B = 8013.458438 C = 9692.468716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.908 3.092 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.594 5.594 10 C 0.162 3.838 11 C -0.127 4.127 12 C -0.082 4.082 13 H 0.101 0.899 14 C 0.108 3.892 15 N -0.609 5.609 16 C 0.578 3.422 17 O -0.551 6.551 18 C -0.159 4.159 19 C -0.042 4.042 20 C -0.143 4.143 21 C 0.114 3.886 22 N -0.595 5.595 23 H 0.415 0.585 24 C 0.041 3.959 25 C -0.189 4.189 26 C -0.122 4.122 27 C -0.060 4.060 28 C 0.099 3.901 29 C -0.102 4.102 30 H 0.074 0.926 31 C 0.178 3.822 32 H 0.251 0.749 33 H 0.018 0.982 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.123 0.877 41 H 0.171 0.829 42 H 0.151 0.849 43 H 0.164 0.836 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.012 0.988 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.095 -16.712 7.454 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.194 4.194 3 Si 0.738 3.262 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.037 3.963 11 C -0.165 4.165 12 C -0.101 4.101 13 H 0.119 0.881 14 C -0.014 4.014 15 N -0.342 5.342 16 C 0.369 3.631 17 O -0.430 6.430 18 C -0.163 4.163 19 C -0.062 4.062 20 C -0.164 4.164 21 C 0.005 3.995 22 N -0.198 5.198 23 H 0.251 0.749 24 C -0.084 4.084 25 C -0.214 4.214 26 C -0.126 4.126 27 C -0.078 4.078 28 C -0.023 4.023 29 C -0.121 4.121 30 H 0.093 0.907 31 C 0.051 3.949 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.188 0.812 42 H 0.169 0.831 43 H 0.181 0.819 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.030 0.970 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.463 -17.056 7.727 20.157 hybrid contribution 0.772 0.666 0.597 1.181 sum 8.235 -16.390 8.324 20.143 Atomic orbital electron populations 1.69858 1.05062 1.24564 1.55830 1.25126 0.95431 0.98190 1.00690 0.86274 0.78679 0.83232 0.77991 1.20925 1.21627 1.21164 1.19222 0.90743 0.84073 1.44804 0.91585 1.42715 1.20383 1.03392 1.65435 1.20632 0.88017 0.90678 0.96929 1.21734 1.00391 0.98165 0.96191 1.22292 0.95020 0.92987 0.99806 0.88079 1.22715 0.90367 0.95750 0.92589 1.48522 1.12563 1.42144 1.30921 1.17831 0.87431 0.78526 0.79352 1.90736 1.31793 1.47944 1.72547 1.19564 0.93733 1.04724 0.98297 1.20562 0.98433 0.95230 0.91986 1.19644 0.90117 1.04636 1.01982 1.18491 0.87137 0.99793 0.94036 1.41781 1.08089 1.45979 1.23945 0.74873 1.21826 0.95253 0.97261 0.94093 1.21823 0.92461 1.06473 1.00655 1.19197 0.94760 1.02432 0.96260 1.22295 0.90285 0.95704 0.99533 1.22652 0.87282 0.94213 0.98124 1.21572 0.96509 0.97110 0.96890 0.90747 1.19288 0.93561 0.85310 0.96703 0.93796 0.96372 0.88393 0.93669 0.92637 0.91723 0.90381 0.84599 0.85874 0.81156 0.83115 0.81911 0.89784 0.90707 0.97017 0.95916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.60 9.93 55.49 0.55 -25.04 16 2 C 0.00 0.08 5.28 -17.43 -0.09 -0.01 16 3 Si 0.91 21.49 29.56 -169.99 -5.02 16.46 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.92 9.40 -15.06 -0.14 -7.07 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.59 -14.37 3.25 -179.59 -0.58 -14.96 16 10 C 0.16 3.87 4.75 -5.91 -0.03 3.84 16 11 C -0.13 -2.43 4.98 -27.50 -0.14 -2.57 16 12 C -0.08 -1.34 3.78 -88.36 -0.33 -1.67 16 13 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.11 1.62 6.23 -1.64 -0.01 1.61 16 15 N -0.61 -9.49 2.80 -174.34 -0.49 -9.98 16 16 C 0.58 9.69 7.81 -12.41 -0.10 9.59 16 17 O -0.55 -10.63 16.65 5.30 0.09 -10.54 16 18 C -0.16 -2.35 5.87 -104.97 -0.62 -2.97 16 19 C -0.04 -0.55 9.51 -39.53 -0.38 -0.93 16 20 C -0.14 -1.60 10.00 -39.85 -0.40 -1.99 16 21 C 0.11 1.31 7.27 -83.95 -0.61 0.70 16 22 N -0.60 -4.95 6.05 -10.61 -0.06 -5.01 16 23 H 0.41 2.07 8.96 -40.82 -0.37 1.70 16 24 C 0.04 0.33 11.81 -16.73 -0.20 0.13 16 25 C -0.19 -2.00 11.09 -37.64 -0.42 -2.41 16 26 C -0.12 -1.56 6.36 -105.15 -0.67 -2.23 16 27 C -0.06 -0.82 8.67 -38.86 -0.34 -1.16 16 28 C 0.10 1.43 3.53 -3.13 -0.01 1.42 16 29 C -0.10 -1.60 2.68 -91.23 -0.24 -1.84 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 C 0.18 3.49 5.67 -6.89 -0.04 3.45 16 32 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.02 0.48 8.05 -51.93 -0.42 0.07 16 34 H 0.10 2.64 5.62 -51.93 -0.29 2.35 16 35 H 0.04 0.88 6.77 -51.93 -0.35 0.53 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.23 7.98 -51.93 -0.41 0.81 16 39 H 0.14 1.73 7.65 -52.48 -0.40 1.33 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.16 2.11 2.76 -57.37 -0.16 1.95 16 44 H 0.08 1.32 6.42 -51.93 -0.33 0.99 16 45 H 0.08 0.91 6.80 -51.93 -0.35 0.56 16 46 H 0.01 0.23 7.78 -51.93 -0.40 -0.17 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -32.74 364.07 -11.21 -43.95 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.42 Total: 3.76 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -4.76 Total: -4.12 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.59 Total: -54.99 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.74 -11.21 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088085886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.815 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds