Wall clock time and date at job start Tue Mar 31 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48507 * 109.47083 * 274.99336 * 3 2 1 5 5 H 1.48499 * 109.47094 * 34.99147 * 3 2 1 6 6 H 1.48497 * 109.47260 * 154.99337 * 3 2 1 7 7 C 1.38809 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00298 * 198.60589 * 7 2 1 9 9 N 1.36938 * 120.00072 * 18.60598 * 7 2 1 10 10 C 1.47442 * 121.96987 * 207.52455 * 9 7 2 11 11 C 1.52786 * 107.14399 * 238.38953 * 10 9 7 12 12 C 1.53072 * 110.80619 * 301.12578 * 11 10 9 13 13 H 1.08996 * 112.49695 * 288.17171 * 12 11 10 14 14 C 1.55918 * 106.85509 * 163.75002 * 12 11 10 15 15 N 1.47637 * 104.42023 * 283.02180 * 14 12 11 16 16 C 1.34778 * 125.73460 * 155.01852 * 15 14 12 17 17 O 1.21594 * 119.99847 * 354.63022 * 16 15 14 18 18 C 1.47506 * 120.00145 * 174.62106 * 16 15 14 19 19 C 1.39341 * 120.20917 * 316.71146 * 18 16 15 20 20 C 1.38322 * 120.49647 * 179.76576 * 19 18 16 21 21 C 1.37911 * 120.59015 * 0.50887 * 20 19 18 22 22 C 1.39539 * 119.98893 * 359.75351 * 21 20 19 23 23 C 1.46572 * 133.95530 * 180.02562 * 22 21 20 24 24 C 1.34213 * 106.89417 * 179.97438 * 23 22 21 25 25 N 1.36906 * 109.87992 * 359.97438 * 24 23 22 26 26 H 0.97003 * 125.01476 * 180.02562 * 25 24 23 27 27 C 1.37118 * 109.96959 * 0.02562 * 25 24 23 28 28 C 1.47455 * 108.53696 * 335.02724 * 15 14 12 29 29 C 1.53334 * 106.44920 * 0.56083 * 28 15 14 30 30 H 1.08998 * 108.04829 * 268.77552 * 29 28 15 31 31 C 1.46720 * 121.32617 * 26.20052 * 9 7 2 32 32 H 0.97000 * 119.99456 * 0.02562 * 1 2 3 33 33 H 1.08991 * 111.06982 * 118.48157 * 10 9 7 34 34 H 1.09005 * 109.16081 * 357.22124 * 10 9 7 35 35 H 1.08992 * 109.20920 * 180.78259 * 11 10 9 36 36 H 1.09004 * 109.17438 * 61.44065 * 11 10 9 37 37 H 1.08997 * 110.44139 * 41.75518 * 14 12 11 38 38 H 1.08997 * 110.44203 * 164.28431 * 14 12 11 39 39 H 1.08001 * 119.75159 * 0.02562 * 19 18 16 40 40 H 1.07995 * 119.70583 * 180.26327 * 20 19 18 41 41 H 1.07995 * 120.00879 * 179.76396 * 21 20 19 42 42 H 1.07998 * 126.55352 * 359.97438 * 23 22 21 43 43 H 1.07999 * 125.05883 * 180.02562 * 24 23 22 44 44 H 1.09002 * 110.06276 * 241.31568 * 28 15 14 45 45 H 1.08996 * 110.06439 * 119.80789 * 28 15 14 46 46 H 1.09002 * 109.16022 * 7.25045 * 31 9 7 47 47 H 1.09001 * 109.16047 * 248.06935 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0480 -1.2265 0.2990 9 7 1.3792 -2.3572 -0.3773 10 6 1.7953 -3.6767 0.1323 11 6 2.1612 -4.5326 -1.0793 12 6 0.9698 -4.6652 -2.0311 13 1 0.1856 -5.3077 -1.6307 14 6 1.5335 -5.1734 -3.3930 15 7 2.1486 -3.9790 -4.0050 16 6 3.1422 -3.9843 -4.9157 17 8 3.6749 -5.0318 -5.2281 18 6 3.5833 -2.7196 -5.5335 19 6 2.6442 -1.7822 -5.9590 20 6 3.0512 -0.5922 -6.5347 21 6 4.3919 -0.3182 -6.7066 22 6 5.3514 -1.2433 -6.2936 23 6 6.8165 -1.2719 -6.3241 24 6 7.1953 -2.4378 -5.7779 25 7 6.0922 -3.1555 -5.4007 26 1 6.1136 -4.0304 -4.9824 27 6 4.9525 -2.4550 -5.7016 28 6 1.4935 -2.7791 -3.4525 29 6 0.4451 -3.2789 -2.4514 30 1 -0.4975 -3.4046 -2.9841 31 6 0.2322 -2.3357 -1.2919 32 1 -0.4849 0.8401 -0.0004 33 1 0.9895 -4.1529 0.6908 34 1 2.6677 -3.5535 0.7741 35 1 2.4617 -5.5240 -0.7404 36 1 2.9928 -4.0671 -1.6084 37 1 2.2840 -5.9468 -3.2296 38 1 0.7272 -5.5510 -4.0217 39 1 1.5906 -1.9846 -5.8345 40 1 2.3125 0.1271 -6.8560 41 1 4.6991 0.6123 -7.1606 42 1 7.4669 -0.5019 -6.7120 43 1 8.2182 -2.7613 -5.6536 44 1 1.0098 -2.2161 -4.2507 45 1 2.2270 -2.1531 -2.9443 46 1 0.0981 -1.3237 -1.6739 47 1 -0.6644 -2.6337 -0.7484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088114709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:11 Heat of formation + Delta-G solvation = 56.765093 kcal Electronic energy + Delta-G solvation = -30430.962797 eV Core-core repulsion = 26579.656545 eV Total energy + Delta-G solvation = -3851.306252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.36498 -40.06177 -38.12380 -36.71493 -35.22736 -32.79454 -31.97085 -30.84333 -30.49890 -29.45521 -28.83418 -27.32778 -25.72039 -24.36674 -23.00895 -21.83866 -21.59923 -21.38573 -20.81911 -19.45899 -18.56328 -17.65499 -17.14822 -16.68843 -16.07719 -15.67117 -15.39821 -14.83291 -14.73925 -14.39634 -14.21978 -13.96153 -13.61434 -13.54693 -13.43582 -13.08648 -12.89516 -12.75949 -12.42598 -12.14386 -12.02248 -11.77563 -11.75137 -11.59381 -11.35267 -11.05142 -11.03323 -10.74556 -10.60797 -10.52431 -10.23157 -9.96349 -9.81211 -9.62920 -9.47819 -9.44035 -8.51925 -8.36830 -8.23684 -7.73844 -6.73867 -5.84026 -3.24792 0.83901 1.65325 2.52180 2.95932 3.16904 3.22855 3.35802 3.43743 3.44773 3.93735 4.46069 4.54977 4.69781 4.88728 4.97337 5.01999 5.07351 5.22661 5.23876 5.34655 5.36462 5.43517 5.51512 5.61802 5.71656 5.79185 5.87386 5.88635 5.90635 5.93176 6.06521 6.16915 6.28899 6.33515 6.41195 6.42925 6.52762 6.53825 6.65346 6.67819 6.69340 6.71047 6.80092 6.97284 7.10673 7.21944 7.48717 7.54474 7.73894 7.76094 8.28026 8.37587 9.15526 9.78373 10.39151 11.24263 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.004784 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.695516 B = 5850.965305 C = 7355.118319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.065 0.935 9 N -0.587 5.587 10 C 0.141 3.859 11 C -0.125 4.125 12 C -0.087 4.087 13 H 0.091 0.909 14 C 0.107 3.893 15 N -0.604 5.604 16 C 0.576 3.424 17 O -0.559 6.559 18 C -0.136 4.136 19 C -0.060 4.060 20 C -0.153 4.153 21 C -0.049 4.049 22 C -0.118 4.118 23 C -0.204 4.204 24 C 0.049 3.951 25 N -0.586 5.586 26 H 0.420 0.580 27 C 0.144 3.856 28 C 0.108 3.892 29 C -0.112 4.112 30 H 0.063 0.937 31 C 0.176 3.824 32 H 0.254 0.746 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.171 0.829 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -5.010 -11.940 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.727 3.273 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.309 5.309 10 C 0.014 3.986 11 C -0.164 4.164 12 C -0.106 4.106 13 H 0.109 0.891 14 C -0.016 4.016 15 N -0.336 5.336 16 C 0.366 3.634 17 O -0.440 6.440 18 C -0.142 4.142 19 C -0.079 4.079 20 C -0.172 4.172 21 C -0.068 4.068 22 C -0.123 4.123 23 C -0.229 4.229 24 C -0.077 4.077 25 N -0.187 5.187 26 H 0.258 0.742 27 C 0.034 3.966 28 C -0.014 4.014 29 C -0.132 4.132 30 H 0.082 0.918 31 C 0.049 3.951 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.165 0.835 43 H 0.188 0.812 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.862 -5.511 -12.069 14.937 hybrid contribution 0.338 0.510 0.221 0.651 sum 7.200 -5.001 -11.848 14.739 Atomic orbital electron populations 1.70037 1.05186 1.25535 1.53810 1.24983 0.95226 0.98297 1.00901 0.86339 0.79266 0.83884 0.77769 1.21270 1.21769 1.20439 1.19126 0.93023 0.84671 1.40796 0.91690 1.44121 1.36360 1.01151 1.49289 1.20951 0.97564 0.87184 0.92852 1.21956 0.97108 0.99125 0.98232 1.22301 0.97976 0.96681 0.93646 0.89127 1.22597 0.96873 0.88038 0.94043 1.48578 1.35237 1.09346 1.40404 1.17893 0.78600 0.88435 0.78518 1.90730 1.56444 1.33193 1.63586 1.18744 0.90476 0.96726 1.08226 1.21129 0.98706 0.92208 0.95886 1.20802 0.95686 0.97530 1.03174 1.20655 0.91792 0.97605 0.96762 1.19170 0.93787 0.94713 1.04640 1.21666 0.92395 0.99146 1.09656 1.21867 0.91561 0.93156 1.01102 1.41794 1.04029 1.19361 1.53541 0.74207 1.17892 0.86758 0.92610 0.99364 1.22242 0.96361 0.87056 0.95704 1.22111 0.96655 0.96351 0.98117 0.91836 1.20141 0.89203 0.98255 0.87522 0.93605 0.95945 0.92888 0.93438 0.92224 0.90825 0.91976 0.84948 0.85311 0.85680 0.83463 0.81212 0.91816 0.89538 0.89079 0.95822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.22 55.49 0.62 -24.34 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.50 9.70 -15.06 -0.15 -6.64 16 8 H 0.07 1.73 7.90 -52.48 -0.41 1.31 16 9 N -0.59 -13.81 2.86 -173.64 -0.50 -14.31 16 10 C 0.14 2.83 6.57 -3.64 -0.02 2.80 16 11 C -0.12 -2.14 4.99 -26.80 -0.13 -2.27 16 12 C -0.09 -1.35 3.67 -88.46 -0.32 -1.68 16 13 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.11 1.60 6.23 -1.86 -0.01 1.59 16 15 N -0.60 -9.94 2.89 -171.20 -0.49 -10.43 16 16 C 0.58 10.05 7.42 -12.48 -0.09 9.96 16 17 O -0.56 -10.81 16.88 5.28 0.09 -10.72 16 18 C -0.14 -2.21 5.43 -104.87 -0.57 -2.78 16 19 C -0.06 -0.86 8.42 -39.14 -0.33 -1.19 16 20 C -0.15 -1.95 10.00 -39.67 -0.40 -2.35 16 21 C -0.05 -0.63 10.09 -39.22 -0.40 -1.03 16 22 C -0.12 -1.69 6.37 -105.15 -0.67 -2.36 16 23 C -0.20 -2.39 11.09 -37.64 -0.42 -2.81 16 24 C 0.05 0.54 11.82 -16.70 -0.20 0.34 16 25 N -0.59 -7.93 6.03 -10.45 -0.06 -8.00 16 26 H 0.42 5.42 8.66 -40.82 -0.35 5.07 16 27 C 0.14 2.26 6.89 -83.76 -0.58 1.68 16 28 C 0.11 1.84 4.94 -3.35 -0.02 1.82 16 29 C -0.11 -1.92 2.70 -90.91 -0.25 -2.16 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 C 0.18 3.83 4.64 -4.94 -0.02 3.80 16 32 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 1.07 7.96 -51.93 -0.41 0.66 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.14 7.20 -51.93 -0.37 0.77 16 37 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.13 1.72 5.99 -52.49 -0.31 1.41 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.06 0.98 5.66 -51.93 -0.29 0.68 16 45 H 0.09 1.75 7.89 -51.93 -0.41 1.34 16 46 H 0.09 2.23 6.02 -51.93 -0.31 1.92 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -31.17 371.18 -11.09 -42.26 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.66 Total: 6.99 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -4.66 Total: -3.23 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.43 Total: -57.08 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.17 -11.09 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088114709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.022 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds