Wall clock time and date at job start Tue Mar 31 2020 22:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48507 * 109.47083 * 274.99336 * 3 2 1 5 5 H 1.48499 * 109.47094 * 34.99147 * 3 2 1 6 6 H 1.48497 * 109.47260 * 154.99337 * 3 2 1 7 7 C 1.38809 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00298 * 198.60589 * 7 2 1 9 9 N 1.36938 * 120.00072 * 18.60598 * 7 2 1 10 10 C 1.47442 * 121.96987 * 207.52455 * 9 7 2 11 11 C 1.52786 * 107.14399 * 238.38953 * 10 9 7 12 12 C 1.53072 * 110.80619 * 301.12578 * 11 10 9 13 13 H 1.08996 * 112.49695 * 288.17171 * 12 11 10 14 14 C 1.55918 * 106.85509 * 163.75002 * 12 11 10 15 15 N 1.47637 * 104.42023 * 283.02180 * 14 12 11 16 16 C 1.34778 * 125.73460 * 155.01852 * 15 14 12 17 17 O 1.21594 * 119.99847 * 354.63022 * 16 15 14 18 18 C 1.47506 * 120.00145 * 174.62106 * 16 15 14 19 19 C 1.39341 * 120.20917 * 316.71146 * 18 16 15 20 20 C 1.38322 * 120.49647 * 179.76576 * 19 18 16 21 21 C 1.37911 * 120.59015 * 0.50887 * 20 19 18 22 22 C 1.39539 * 119.98893 * 359.75351 * 21 20 19 23 23 C 1.46572 * 133.95530 * 180.02562 * 22 21 20 24 24 C 1.34213 * 106.89417 * 179.97438 * 23 22 21 25 25 N 1.36906 * 109.87992 * 359.97438 * 24 23 22 26 26 H 0.97003 * 125.01476 * 180.02562 * 25 24 23 27 27 C 1.37118 * 109.96959 * 0.02562 * 25 24 23 28 28 C 1.47455 * 108.53696 * 335.02724 * 15 14 12 29 29 C 1.53334 * 106.44920 * 0.56083 * 28 15 14 30 30 H 1.08998 * 108.04829 * 268.77552 * 29 28 15 31 31 C 1.46720 * 121.32617 * 26.20052 * 9 7 2 32 32 H 0.97000 * 119.99456 * 0.02562 * 1 2 3 33 33 H 1.08991 * 111.06982 * 118.48157 * 10 9 7 34 34 H 1.09005 * 109.16081 * 357.22124 * 10 9 7 35 35 H 1.08992 * 109.20920 * 180.78259 * 11 10 9 36 36 H 1.09004 * 109.17438 * 61.44065 * 11 10 9 37 37 H 1.08997 * 110.44139 * 41.75518 * 14 12 11 38 38 H 1.08997 * 110.44203 * 164.28431 * 14 12 11 39 39 H 1.08001 * 119.75159 * 0.02562 * 19 18 16 40 40 H 1.07995 * 119.70583 * 180.26327 * 20 19 18 41 41 H 1.07995 * 120.00879 * 179.76396 * 21 20 19 42 42 H 1.07998 * 126.55352 * 359.97438 * 23 22 21 43 43 H 1.07999 * 125.05883 * 180.02562 * 24 23 22 44 44 H 1.09002 * 110.06276 * 241.31568 * 28 15 14 45 45 H 1.08996 * 110.06439 * 119.80789 * 28 15 14 46 46 H 1.09002 * 109.16022 * 7.25045 * 31 9 7 47 47 H 1.09001 * 109.16047 * 248.06935 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0480 -1.2265 0.2990 9 7 1.3792 -2.3572 -0.3773 10 6 1.7953 -3.6767 0.1323 11 6 2.1612 -4.5326 -1.0793 12 6 0.9698 -4.6652 -2.0311 13 1 0.1856 -5.3077 -1.6307 14 6 1.5335 -5.1734 -3.3930 15 7 2.1486 -3.9790 -4.0050 16 6 3.1422 -3.9843 -4.9157 17 8 3.6749 -5.0318 -5.2281 18 6 3.5833 -2.7196 -5.5335 19 6 2.6442 -1.7822 -5.9590 20 6 3.0512 -0.5922 -6.5347 21 6 4.3919 -0.3182 -6.7066 22 6 5.3514 -1.2433 -6.2936 23 6 6.8165 -1.2719 -6.3241 24 6 7.1953 -2.4378 -5.7779 25 7 6.0922 -3.1555 -5.4007 26 1 6.1136 -4.0304 -4.9824 27 6 4.9525 -2.4550 -5.7016 28 6 1.4935 -2.7791 -3.4525 29 6 0.4451 -3.2789 -2.4514 30 1 -0.4975 -3.4046 -2.9841 31 6 0.2322 -2.3357 -1.2919 32 1 -0.4849 0.8401 -0.0004 33 1 0.9895 -4.1529 0.6908 34 1 2.6677 -3.5535 0.7741 35 1 2.4617 -5.5240 -0.7404 36 1 2.9928 -4.0671 -1.6084 37 1 2.2840 -5.9468 -3.2296 38 1 0.7272 -5.5510 -4.0217 39 1 1.5906 -1.9846 -5.8345 40 1 2.3125 0.1271 -6.8560 41 1 4.6991 0.6123 -7.1606 42 1 7.4669 -0.5019 -6.7120 43 1 8.2182 -2.7613 -5.6536 44 1 1.0098 -2.2161 -4.2507 45 1 2.2270 -2.1531 -2.9443 46 1 0.0981 -1.3237 -1.6739 47 1 -0.6644 -2.6337 -0.7484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088114709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:09 Heat of formation + Delta-G solvation = 39.865584 kcal Electronic energy + Delta-G solvation = -30431.695615 eV Core-core repulsion = 26579.656545 eV Total energy + Delta-G solvation = -3852.039070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.39532 -41.37108 -39.52657 -37.74788 -36.87273 -34.41782 -33.18151 -32.35360 -32.06367 -30.49986 -29.88107 -28.77272 -27.37038 -25.84222 -24.35444 -23.19814 -22.81041 -22.78015 -21.85208 -20.63248 -20.12400 -18.77540 -18.67961 -18.08251 -17.24278 -17.10336 -16.71262 -16.48448 -15.83758 -15.74502 -15.45627 -15.31654 -15.18975 -14.95701 -14.74090 -14.44004 -13.98904 -13.93610 -13.85593 -13.57116 -13.46279 -13.17898 -12.88161 -12.81850 -12.79155 -12.61162 -12.53333 -12.30734 -12.26994 -12.05505 -11.98270 -11.68649 -11.08905 -11.04455 -10.98050 -10.72923 -10.50603 -9.70481 -9.25625 -8.72202 -8.66436 -7.86501 -5.28778 -0.21368 0.61154 1.44763 1.45339 1.48499 1.55442 1.80963 2.01900 2.21616 2.51253 2.87512 3.24774 3.34966 3.64328 3.64672 3.72370 3.85011 3.90104 3.99004 4.06650 4.25107 4.29369 4.36599 4.43635 4.52776 4.62048 4.63780 4.65995 4.71332 4.81127 4.88614 4.94102 4.94402 4.99872 5.05011 5.11991 5.15155 5.16347 5.31993 5.33978 5.41404 5.51876 5.57224 5.64630 5.72258 5.76152 5.77167 6.12040 6.37504 6.39696 6.56289 6.96659 7.16700 7.86545 8.42308 9.19163 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.004784 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.695516 B = 5850.965305 C = 7355.118319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.038 4.038 3 Si 0.952 3.048 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.055 0.945 9 N -0.603 5.603 10 C 0.138 3.862 11 C -0.113 4.113 12 C -0.079 4.079 13 H 0.118 0.882 14 C 0.109 3.891 15 N -0.603 5.603 16 C 0.574 3.426 17 O -0.584 6.584 18 C -0.166 4.166 19 C -0.067 4.067 20 C -0.159 4.159 21 C -0.050 4.050 22 C -0.138 4.138 23 C -0.213 4.213 24 C 0.053 3.947 25 N -0.593 5.593 26 H 0.419 0.581 27 C 0.112 3.888 28 C 0.122 3.878 29 C -0.108 4.108 30 H 0.090 0.910 31 C 0.187 3.813 32 H 0.251 0.749 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.175 0.825 43 H 0.211 0.789 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.204 -5.213 -13.174 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.781 3.219 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.384 4.384 8 H 0.073 0.927 9 N -0.327 5.327 10 C 0.013 3.987 11 C -0.153 4.153 12 C -0.098 4.098 13 H 0.136 0.864 14 C -0.012 4.012 15 N -0.334 5.334 16 C 0.365 3.635 17 O -0.467 6.467 18 C -0.171 4.171 19 C -0.087 4.087 20 C -0.178 4.178 21 C -0.068 4.068 22 C -0.143 4.143 23 C -0.237 4.237 24 C -0.072 4.072 25 N -0.195 5.195 26 H 0.256 0.744 27 C 0.002 3.998 28 C -0.001 4.001 29 C -0.128 4.128 30 H 0.108 0.892 31 C 0.060 3.940 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.193 0.807 43 H 0.227 0.773 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 7.510 -5.733 -13.302 16.316 hybrid contribution 0.201 0.565 0.639 0.876 sum 7.711 -5.168 -12.664 15.702 Atomic orbital electron populations 1.70151 1.06178 1.25780 1.55125 1.25542 0.95878 1.00653 1.01362 0.85490 0.78211 0.80678 0.77566 1.21059 1.21933 1.20149 1.19278 0.92831 0.86132 1.40162 0.92719 1.44324 1.36594 1.01637 1.50116 1.21070 0.97310 0.86191 0.94171 1.21798 0.97047 0.99478 0.96928 1.22329 0.97832 0.95943 0.93684 0.86439 1.22676 0.97363 0.87411 0.93773 1.48583 1.35115 1.09573 1.40122 1.18150 0.78283 0.88662 0.78379 1.90695 1.57233 1.34166 1.64601 1.18860 0.91429 0.96928 1.09922 1.21328 0.98832 0.92581 0.95936 1.21157 0.96570 0.97394 1.02649 1.21079 0.91604 0.98319 0.95803 1.19667 0.95473 0.94532 1.04659 1.22078 0.91502 1.00212 1.09939 1.22595 0.92511 0.92573 0.99567 1.41978 1.04359 1.19498 1.53690 0.74382 1.18233 0.87179 0.93889 1.00546 1.21993 0.95243 0.86957 0.95868 1.21938 0.98097 0.96235 0.96565 0.89200 1.19919 0.88013 0.97680 0.88351 0.93969 0.95196 0.93774 0.90729 0.94666 0.90944 0.89655 0.84250 0.82678 0.82762 0.80725 0.77265 0.90191 0.93327 0.92213 0.97595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.40 11.22 21.65 0.24 -52.16 16 2 C -0.04 -2.07 4.91 84.86 0.42 -1.65 16 3 Si 0.95 44.25 29.59 68.60 2.03 46.28 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.25 -13.69 9.70 84.03 0.82 -12.87 16 8 H 0.06 3.00 7.90 -2.91 -0.02 2.97 16 9 N -0.60 -28.89 2.86 -703.28 -2.01 -30.90 16 10 C 0.14 5.52 6.57 86.13 0.57 6.09 16 11 C -0.11 -3.76 4.99 30.55 0.15 -3.60 16 12 C -0.08 -2.29 3.67 -9.40 -0.03 -2.33 16 13 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 14 C 0.11 3.06 6.23 87.17 0.54 3.60 16 15 N -0.60 -19.48 2.89 -813.83 -2.35 -21.84 16 16 C 0.57 20.17 7.42 86.69 0.64 20.81 16 17 O -0.58 -22.76 16.88 -4.01 -0.07 -22.83 16 18 C -0.17 -5.44 5.43 -20.03 -0.11 -5.55 16 19 C -0.07 -1.91 8.42 22.56 0.19 -1.72 16 20 C -0.16 -3.86 10.00 22.21 0.22 -3.63 16 21 C -0.05 -1.19 10.09 22.51 0.23 -0.96 16 22 C -0.14 -3.81 6.37 -20.21 -0.13 -3.94 16 23 C -0.21 -4.60 11.09 23.53 0.26 -4.34 16 24 C 0.05 1.06 11.82 82.98 0.98 2.04 16 25 N -0.59 -15.97 6.03 -186.98 -1.13 -17.10 16 26 H 0.42 10.98 8.66 -92.71 -0.80 10.18 16 27 C 0.11 3.53 6.89 39.44 0.27 3.80 16 28 C 0.12 4.11 4.94 86.31 0.43 4.53 16 29 C -0.11 -3.60 2.70 -10.98 -0.03 -3.63 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 C 0.19 8.23 4.64 85.68 0.40 8.63 16 32 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.80 7.96 -2.38 -0.02 1.78 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.03 1.34 7.20 -2.38 -0.02 1.32 16 37 H 0.07 2.08 7.84 -2.39 -0.02 2.06 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.14 3.56 5.99 -2.91 -0.02 3.54 16 40 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.08 2.41 5.66 -2.39 -0.01 2.40 16 45 H 0.05 2.03 7.89 -2.39 -0.02 2.01 16 46 H 0.06 3.01 6.02 -2.39 -0.01 2.99 16 47 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -69.62 371.18 2.72 -66.90 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.19 Total: 26.38 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.81 Total: 5.27 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -5.25 Total: -122.00 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.62 2.72 -66.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088114709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.769 kcal (2) G-P(sol) polarization free energy of solvation -69.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds