Wall clock time and date at job start Tue Mar 31 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99799 * 2 1 4 4 H 1.48504 * 109.47311 * 239.99858 * 3 2 1 5 5 H 1.48503 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47343 * 119.99883 * 3 2 1 7 7 C 1.38810 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00303 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.50232 * 130.83610 * 0.02562 * 9 7 2 11 11 H 1.09003 * 115.86348 * 359.62645 * 10 9 7 12 12 C 1.55842 * 101.05163 * 233.94900 * 10 9 7 13 13 C 1.54854 * 103.44496 * 327.06689 * 12 10 9 14 14 C 1.50237 * 130.83678 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.86116 * 359.65197 * 14 9 7 16 16 C 1.55849 * 101.04589 * 233.98369 * 14 9 7 17 17 H 1.09001 * 110.62664 * 208.41110 * 16 14 9 18 18 N 1.46504 * 110.62700 * 85.55234 * 16 14 9 19 19 C 1.34773 * 119.99990 * 154.99658 * 18 16 14 20 20 O 1.21287 * 120.00090 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00064 * 179.97438 * 19 18 16 22 22 N 1.46508 * 109.46960 * 179.97438 * 21 19 18 23 23 C 1.36829 * 125.06358 * 264.97199 * 22 21 19 24 24 C 1.34239 * 109.92845 * 180.02562 * 23 22 21 25 25 C 1.46486 * 106.99611 * 0.26969 * 24 23 22 26 26 C 1.39639 * 134.02878 * 180.50690 * 25 24 23 27 27 C 1.36623 * 119.75918 * 179.56653 * 26 25 24 28 28 C 1.38834 * 120.53351 * 359.69668 * 27 26 25 29 29 C 1.37739 * 120.66423 * 0.02562 * 28 27 26 30 30 C 1.37680 * 125.06144 * 85.02364 * 22 21 19 31 31 C 1.54854 * 103.44802 * 327.06157 * 16 14 9 32 32 H 0.97000 * 120.00131 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.62599 * 85.55572 * 12 10 9 34 34 H 1.09000 * 110.63094 * 208.41290 * 12 10 9 35 35 H 1.08997 * 110.62665 * 241.50564 * 13 12 10 36 36 H 1.09001 * 110.62296 * 118.49001 * 13 12 10 37 37 H 0.96997 * 119.99979 * 335.00086 * 18 16 14 38 38 H 1.09007 * 109.47061 * 60.00508 * 21 19 18 39 39 H 1.08995 * 109.47518 * 300.00071 * 21 19 18 40 40 H 1.07998 * 125.03306 * 0.04274 * 23 22 21 41 41 H 1.08002 * 126.49782 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.11589 * 359.23987 * 26 25 24 43 43 H 1.08005 * 119.73261 * 179.67830 * 27 26 25 44 44 H 1.07999 * 119.66277 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.11078 * 179.97438 * 29 28 27 46 46 H 1.09003 * 110.62602 * 118.48826 * 31 16 14 47 47 H 1.08993 * 110.62845 * 241.51099 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8013 -1.7966 0.0050 12 6 -0.2750 -3.6102 1.2364 13 6 1.0662 -4.3844 1.2376 14 6 1.8189 -3.8072 0.0005 15 1 2.9014 -3.9342 -0.0054 16 6 1.0673 -4.3845 -1.2367 17 1 0.8959 -5.4543 -1.1171 18 7 1.8173 -4.1180 -2.4667 19 6 1.6534 -4.9142 -3.5417 20 8 0.8848 -5.8510 -3.4910 21 6 2.4244 -4.6398 -4.8071 22 7 2.0727 -5.6387 -5.8195 23 6 2.7720 -6.7889 -6.0651 24 6 2.1834 -7.4799 -7.0541 25 6 1.0151 -6.7060 -7.4807 26 6 0.0205 -6.9001 -8.4414 27 6 -0.9665 -5.9678 -8.5935 28 6 -0.9925 -4.8316 -7.7962 29 6 -0.0246 -4.6231 -6.8386 30 6 0.9900 -5.5594 -6.6662 31 6 -0.2738 -3.6103 -1.2369 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3830 -3.0280 2.1516 34 1 -1.1156 -4.2936 1.1161 35 1 0.8924 -5.4536 1.1166 36 1 1.6231 -4.1862 2.1533 37 1 2.4318 -3.3687 -2.5074 38 1 3.4933 -4.6935 -4.6002 39 1 2.1752 -3.6449 -5.1760 40 1 3.6650 -7.0954 -5.5408 41 1 2.5120 -8.4247 -7.4614 42 1 0.0345 -7.7814 -9.0655 43 1 -1.7327 -6.1158 -9.3403 44 1 -1.7791 -4.1035 -7.9287 45 1 -0.0532 -3.7358 -6.2236 46 1 -0.3809 -3.0281 -2.1522 47 1 -1.1127 -4.2955 -1.1162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098432757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:35 Heat of formation + Delta-G solvation = 78.853331 kcal Electronic energy + Delta-G solvation = -29355.945629 eV Core-core repulsion = 25505.597195 eV Total energy + Delta-G solvation = -3850.348434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38276 -39.79282 -38.43882 -36.89014 -33.90000 -32.95107 -32.57264 -30.53015 -29.19360 -29.03195 -28.82095 -28.08984 -26.43503 -24.26735 -22.74048 -21.88653 -21.41162 -20.43951 -19.97663 -19.73353 -18.75349 -17.27560 -17.14196 -17.04515 -16.46125 -15.73543 -15.39536 -15.01540 -14.83249 -14.57191 -14.04813 -13.97244 -13.76982 -13.71606 -13.38053 -13.08717 -12.84876 -12.63795 -12.28754 -12.08967 -11.87459 -11.60914 -11.54118 -11.30728 -11.19640 -11.01631 -10.95472 -10.82330 -10.59540 -10.43025 -10.18893 -10.00999 -9.92087 -9.60169 -9.31646 -9.23224 -9.04002 -8.58215 -8.12626 -7.63246 -7.03052 -5.81902 -3.21685 1.17806 1.67568 2.55624 2.73397 2.80341 3.30223 3.35322 3.37263 3.53315 3.99381 4.33507 4.60531 4.66252 4.78511 4.88482 4.94373 5.05106 5.05610 5.16818 5.28045 5.45211 5.50970 5.56492 5.62350 5.66986 5.80824 5.81787 5.94440 5.98484 6.02397 6.07705 6.09721 6.22578 6.34913 6.42105 6.50628 6.53600 6.64320 6.66954 6.75832 6.79046 6.81469 6.87949 7.01772 7.21472 7.25043 7.27824 7.38883 7.71736 7.82996 8.09596 8.43597 8.99320 9.62791 10.43650 11.26842 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.002935 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.319219 B = 9536.930526 C =10110.717688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.153 0.847 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.126 3.874 15 H 0.088 0.912 16 C 0.129 3.871 17 H 0.079 0.921 18 N -0.702 5.702 19 C 0.488 3.512 20 O -0.532 6.532 21 C 0.089 3.911 22 N -0.465 5.465 23 C 0.061 3.939 24 C -0.208 4.208 25 C -0.109 4.109 26 C -0.075 4.075 27 C -0.150 4.150 28 C -0.103 4.103 29 C -0.122 4.122 30 C 0.111 3.889 31 C -0.142 4.142 32 H 0.255 0.745 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.404 0.596 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.165 0.835 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.058 0.942 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -10.926 -11.740 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.179 4.179 13 C -0.167 4.167 14 C 0.017 3.983 15 H 0.106 0.894 16 C 0.023 3.977 17 H 0.097 0.903 18 N -0.352 5.352 19 C 0.271 3.729 20 O -0.408 6.408 21 C -0.037 4.037 22 N -0.148 5.148 23 C -0.063 4.063 24 C -0.233 4.233 25 C -0.114 4.114 26 C -0.094 4.094 27 C -0.169 4.169 28 C -0.122 4.122 29 C -0.142 4.142 30 C 0.005 3.995 31 C -0.182 4.182 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.183 0.817 41 H 0.163 0.837 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.134 0.866 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.379 -11.021 -11.438 16.239 hybrid contribution 0.793 1.219 0.230 1.473 sum 4.172 -9.802 -11.207 15.463 Atomic orbital electron populations 1.69446 1.05026 1.25203 1.56921 1.24707 0.95585 0.97511 1.02640 0.86147 0.78390 0.83053 0.77813 1.21280 1.21573 1.21258 1.18947 0.90153 0.81898 1.43593 0.90453 1.46533 1.01624 0.98547 1.84432 1.23752 0.87389 0.95303 0.88826 0.82985 1.23070 0.95232 0.98300 1.01294 1.22876 0.97716 0.97620 0.98515 1.23174 0.95975 0.86994 0.92175 0.89438 1.22669 0.92863 0.98609 0.83547 0.90274 1.45991 1.45243 1.31256 1.12730 1.20791 0.83609 0.83378 0.85131 1.90743 1.37004 1.30107 1.82976 1.21638 1.01418 0.93314 0.87359 1.43389 1.22770 1.19125 1.29497 1.21747 0.98523 0.86783 0.99292 1.21592 0.97938 1.01557 1.02182 1.19185 0.97743 0.95446 0.98986 1.20211 0.93338 0.98876 0.96943 1.20584 0.99680 0.95300 1.01335 1.20773 0.97979 0.97889 0.95556 1.20064 0.94499 0.98900 1.00762 1.18187 0.90573 0.97529 0.93203 1.23424 0.94919 0.98341 1.01509 0.93410 0.92597 0.93313 0.93027 0.92389 0.76181 0.86425 0.86795 0.81725 0.83726 0.86344 0.86310 0.85927 0.86555 0.92296 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.06 10.46 55.49 0.58 -24.48 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.92 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.22 -5.47 10.59 -15.06 -0.16 -5.63 16 8 H 0.08 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.59 -13.40 2.99 -145.82 -0.44 -13.84 16 10 C 0.15 3.41 4.71 -62.83 -0.30 3.11 16 11 H 0.15 3.89 5.52 -51.93 -0.29 3.60 16 12 C -0.14 -2.71 6.44 -24.24 -0.16 -2.86 16 13 C -0.13 -2.25 6.44 -24.21 -0.16 -2.41 16 14 C 0.13 2.33 5.06 -62.77 -0.32 2.01 16 15 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 16 C 0.13 2.31 2.80 -65.43 -0.18 2.13 16 17 H 0.08 1.46 7.23 -51.93 -0.38 1.08 16 18 N -0.70 -11.04 5.07 -51.39 -0.26 -11.30 16 19 C 0.49 7.57 7.90 -10.99 -0.09 7.48 16 20 O -0.53 -10.47 16.07 5.55 0.09 -10.38 16 21 C 0.09 1.03 6.48 -5.19 -0.03 1.00 16 22 N -0.47 -6.23 2.27 -115.71 -0.26 -6.49 16 23 C 0.06 0.72 11.27 -16.73 -0.19 0.54 16 24 C -0.21 -2.54 11.08 -37.67 -0.42 -2.95 16 25 C -0.11 -1.53 6.37 -105.14 -0.67 -2.20 16 26 C -0.08 -0.92 10.05 -39.64 -0.40 -1.32 16 27 C -0.15 -1.75 9.97 -39.94 -0.40 -2.15 16 28 C -0.10 -1.28 10.01 -39.54 -0.40 -1.68 16 29 C -0.12 -1.73 10.00 -39.43 -0.39 -2.12 16 30 C 0.11 1.64 6.80 -83.99 -0.57 1.07 16 31 C -0.14 -2.82 6.23 -24.26 -0.15 -2.97 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 35 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.40 5.94 8.66 -40.82 -0.35 5.59 16 38 H 0.12 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.06 1.27 7.98 -51.93 -0.41 0.85 16 47 H 0.05 1.02 7.82 -51.93 -0.41 0.62 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -31.62 383.46 -11.45 -43.07 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.84 Total: 11.19 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -5.07 Total: -9.27 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.38 Total: -56.11 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.62 -11.45 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098432757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.919 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds