Wall clock time and date at job start Tue Mar 31 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99799 * 2 1 4 4 H 1.48504 * 109.47311 * 239.99858 * 3 2 1 5 5 H 1.48503 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47343 * 119.99883 * 3 2 1 7 7 C 1.38810 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00303 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.50232 * 130.83610 * 0.02562 * 9 7 2 11 11 H 1.09003 * 115.86348 * 359.62645 * 10 9 7 12 12 C 1.55842 * 101.05163 * 233.94900 * 10 9 7 13 13 C 1.54854 * 103.44496 * 327.06689 * 12 10 9 14 14 C 1.50237 * 130.83678 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.86116 * 359.65197 * 14 9 7 16 16 C 1.55849 * 101.04589 * 233.98369 * 14 9 7 17 17 H 1.09001 * 110.62664 * 208.41110 * 16 14 9 18 18 N 1.46504 * 110.62700 * 85.55234 * 16 14 9 19 19 C 1.34773 * 119.99990 * 154.99658 * 18 16 14 20 20 O 1.21287 * 120.00090 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00064 * 179.97438 * 19 18 16 22 22 N 1.46508 * 109.46960 * 179.97438 * 21 19 18 23 23 C 1.36829 * 125.06358 * 264.97199 * 22 21 19 24 24 C 1.34239 * 109.92845 * 180.02562 * 23 22 21 25 25 C 1.46486 * 106.99611 * 0.26969 * 24 23 22 26 26 C 1.39639 * 134.02878 * 180.50690 * 25 24 23 27 27 C 1.36623 * 119.75918 * 179.56653 * 26 25 24 28 28 C 1.38834 * 120.53351 * 359.69668 * 27 26 25 29 29 C 1.37739 * 120.66423 * 0.02562 * 28 27 26 30 30 C 1.37680 * 125.06144 * 85.02364 * 22 21 19 31 31 C 1.54854 * 103.44802 * 327.06157 * 16 14 9 32 32 H 0.97000 * 120.00131 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.62599 * 85.55572 * 12 10 9 34 34 H 1.09000 * 110.63094 * 208.41290 * 12 10 9 35 35 H 1.08997 * 110.62665 * 241.50564 * 13 12 10 36 36 H 1.09001 * 110.62296 * 118.49001 * 13 12 10 37 37 H 0.96997 * 119.99979 * 335.00086 * 18 16 14 38 38 H 1.09007 * 109.47061 * 60.00508 * 21 19 18 39 39 H 1.08995 * 109.47518 * 300.00071 * 21 19 18 40 40 H 1.07998 * 125.03306 * 0.04274 * 23 22 21 41 41 H 1.08002 * 126.49782 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.11589 * 359.23987 * 26 25 24 43 43 H 1.08005 * 119.73261 * 179.67830 * 27 26 25 44 44 H 1.07999 * 119.66277 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.11078 * 179.97438 * 29 28 27 46 46 H 1.09003 * 110.62602 * 118.48826 * 31 16 14 47 47 H 1.08993 * 110.62845 * 241.51099 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8013 -1.7966 0.0050 12 6 -0.2750 -3.6102 1.2364 13 6 1.0662 -4.3844 1.2376 14 6 1.8189 -3.8072 0.0005 15 1 2.9014 -3.9342 -0.0054 16 6 1.0673 -4.3845 -1.2367 17 1 0.8959 -5.4543 -1.1171 18 7 1.8173 -4.1180 -2.4667 19 6 1.6534 -4.9142 -3.5417 20 8 0.8848 -5.8510 -3.4910 21 6 2.4244 -4.6398 -4.8071 22 7 2.0727 -5.6387 -5.8195 23 6 2.7720 -6.7889 -6.0651 24 6 2.1834 -7.4799 -7.0541 25 6 1.0151 -6.7060 -7.4807 26 6 0.0205 -6.9001 -8.4414 27 6 -0.9665 -5.9678 -8.5935 28 6 -0.9925 -4.8316 -7.7962 29 6 -0.0246 -4.6231 -6.8386 30 6 0.9900 -5.5594 -6.6662 31 6 -0.2738 -3.6103 -1.2369 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3830 -3.0280 2.1516 34 1 -1.1156 -4.2936 1.1161 35 1 0.8924 -5.4536 1.1166 36 1 1.6231 -4.1862 2.1533 37 1 2.4318 -3.3687 -2.5074 38 1 3.4933 -4.6935 -4.6002 39 1 2.1752 -3.6449 -5.1760 40 1 3.6650 -7.0954 -5.5408 41 1 2.5120 -8.4247 -7.4614 42 1 0.0345 -7.7814 -9.0655 43 1 -1.7327 -6.1158 -9.3403 44 1 -1.7791 -4.1035 -7.9287 45 1 -0.0532 -3.7358 -6.2236 46 1 -0.3809 -3.0281 -2.1522 47 1 -1.1127 -4.2955 -1.1162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098432757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:34 Heat of formation + Delta-G solvation = 62.357433 kcal Electronic energy + Delta-G solvation = -29356.660945 eV Core-core repulsion = 25505.597195 eV Total energy + Delta-G solvation = -3851.063750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33361 -41.22487 -39.83560 -37.83656 -35.34023 -34.44868 -33.85335 -31.52542 -30.98593 -30.47199 -29.82820 -29.48364 -27.55269 -26.09042 -23.73380 -23.12820 -22.43464 -21.64705 -21.53263 -20.94611 -20.30494 -18.86209 -18.40270 -18.19307 -17.37613 -17.08512 -16.74529 -16.29336 -16.16584 -15.84483 -15.67649 -15.14730 -15.04949 -14.76643 -14.60490 -14.27213 -13.96132 -13.75867 -13.65756 -13.51415 -13.17308 -12.91959 -12.83625 -12.79562 -12.67662 -12.50133 -12.48111 -12.13441 -11.99953 -11.92272 -11.75377 -11.72376 -11.29840 -10.99881 -10.94800 -10.79676 -10.51162 -10.00608 -9.08513 -8.88066 -8.56614 -7.75558 -5.15842 0.23144 0.70604 1.50143 1.51123 1.52452 1.57603 1.61068 1.90613 2.37722 2.50693 3.02198 3.37441 3.43493 3.67088 3.75316 3.80136 3.98781 4.00077 4.07022 4.10389 4.16691 4.25512 4.28740 4.43125 4.45602 4.56373 4.59305 4.60057 4.66880 4.79541 4.81119 4.87269 4.94402 5.07332 5.07488 5.14108 5.15974 5.17840 5.36188 5.50415 5.57157 5.57468 5.67160 5.70255 5.87065 5.88640 5.90772 6.25832 6.30585 6.34585 6.59631 7.05259 7.20373 7.72878 8.58258 9.31577 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.002935 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.319219 B = 9536.930526 C =10110.717688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.283 1.283 7 C -0.214 4.214 8 H 0.089 0.911 9 N -0.608 5.608 10 C 0.140 3.860 11 H 0.115 0.885 12 C -0.134 4.134 13 C -0.120 4.120 14 C 0.130 3.870 15 H 0.108 0.892 16 C 0.142 3.858 17 H 0.082 0.918 18 N -0.698 5.698 19 C 0.491 3.509 20 O -0.575 6.575 21 C 0.094 3.906 22 N -0.473 5.473 23 C 0.056 3.944 24 C -0.220 4.220 25 C -0.134 4.134 26 C -0.083 4.083 27 C -0.153 4.153 28 C -0.110 4.110 29 C -0.148 4.148 30 C 0.081 3.919 31 C -0.132 4.132 32 H 0.245 0.755 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.410 0.590 38 H 0.160 0.840 39 H 0.124 0.876 40 H 0.199 0.801 41 H 0.168 0.832 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.110 0.890 46 H 0.034 0.966 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -12.607 -12.510 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.209 1.209 7 C -0.343 4.343 8 H 0.106 0.894 9 N -0.330 5.330 10 C 0.033 3.967 11 H 0.132 0.868 12 C -0.173 4.173 13 C -0.159 4.159 14 C 0.022 3.978 15 H 0.125 0.875 16 C 0.035 3.965 17 H 0.100 0.900 18 N -0.349 5.349 19 C 0.276 3.724 20 O -0.454 6.454 21 C -0.032 4.032 22 N -0.156 5.156 23 C -0.068 4.068 24 C -0.244 4.244 25 C -0.139 4.139 26 C -0.101 4.101 27 C -0.172 4.172 28 C -0.129 4.129 29 C -0.168 4.168 30 C -0.025 4.025 31 C -0.172 4.172 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.246 0.754 38 H 0.178 0.822 39 H 0.142 0.858 40 H 0.216 0.784 41 H 0.185 0.815 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.128 0.872 46 H 0.053 0.947 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.391 -12.725 -12.217 18.446 hybrid contribution 0.128 1.679 0.442 1.741 sum 5.520 -11.046 -11.775 17.063 Atomic orbital electron populations 1.69712 1.06291 1.24834 1.59006 1.25426 0.96241 1.00385 1.03864 0.85213 0.76990 0.79421 0.78028 1.20223 1.23052 1.20935 1.19336 0.90841 0.82819 1.41323 0.89351 1.46699 1.02031 0.99672 1.84553 1.23563 0.87001 0.95037 0.91060 0.86772 1.22973 0.97310 0.98055 0.98986 1.22838 0.96166 0.98819 0.98109 1.23376 0.97210 0.84518 0.92667 0.87458 1.22397 0.91673 0.98083 0.84335 0.90006 1.45913 1.45007 1.31563 1.12376 1.21440 0.82907 0.82194 0.85841 1.90723 1.38938 1.31991 1.83767 1.21773 1.02980 0.93489 0.84923 1.43581 1.22644 1.19918 1.29463 1.22373 0.99200 0.86009 0.99179 1.21974 0.97456 1.02445 1.02512 1.19667 0.98913 0.95779 0.99547 1.20595 0.92940 0.99793 0.96793 1.20945 1.00141 0.94654 1.01496 1.21103 0.97941 0.98707 0.95148 1.20225 0.95590 0.99174 1.01834 1.18517 0.91434 0.98233 0.94318 1.23275 0.96743 0.97898 0.99327 0.94575 0.94336 0.91475 0.90279 0.92065 0.75407 0.82244 0.85768 0.78422 0.81459 0.84001 0.83547 0.84211 0.87239 0.94742 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.60 10.46 21.65 0.23 -53.38 16 2 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.97 43.01 29.55 68.60 2.03 45.04 16 4 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.21 -10.66 10.59 84.03 0.89 -9.77 16 8 H 0.09 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.61 -27.31 2.99 -615.26 -1.84 -29.15 16 10 C 0.14 6.30 4.71 46.21 0.22 6.51 16 11 H 0.12 6.13 5.52 -2.39 -0.01 6.12 16 12 C -0.13 -5.11 6.44 32.21 0.21 -4.90 16 13 C -0.12 -3.94 6.44 32.23 0.21 -3.73 16 14 C 0.13 4.54 5.06 46.25 0.23 4.77 16 15 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 16 C 0.14 4.87 2.80 46.61 0.13 5.00 16 17 H 0.08 2.84 7.23 -2.39 -0.02 2.82 16 18 N -0.70 -20.90 5.07 -434.89 -2.21 -23.11 16 19 C 0.49 14.57 7.90 87.66 0.69 15.26 16 20 O -0.57 -22.23 16.07 -3.05 -0.05 -22.28 16 21 C 0.09 1.99 6.48 85.63 0.56 2.54 16 22 N -0.47 -12.00 2.27 -519.98 -1.18 -13.18 16 23 C 0.06 1.21 11.27 83.00 0.94 2.14 16 24 C -0.22 -4.98 11.08 23.51 0.26 -4.72 16 25 C -0.13 -3.67 6.37 -20.20 -0.13 -3.80 16 26 C -0.08 -1.94 10.05 22.23 0.22 -1.71 16 27 C -0.15 -3.39 9.97 22.03 0.22 -3.17 16 28 C -0.11 -2.71 10.01 22.29 0.22 -2.49 16 29 C -0.15 -4.26 10.00 22.37 0.22 -4.03 16 30 C 0.08 2.37 6.80 39.03 0.27 2.64 16 31 C -0.13 -5.29 6.23 32.19 0.20 -5.09 16 32 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.28 7.82 -2.39 -0.02 2.26 16 35 H 0.08 2.21 7.82 -2.39 -0.02 2.19 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.41 11.31 8.66 -92.71 -0.80 10.51 16 38 H 0.16 2.00 8.12 -2.38 -0.02 1.98 16 39 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.14 2.49 8.06 -2.92 -0.02 2.47 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 46 H 0.03 1.51 7.98 -2.39 -0.02 1.50 16 47 H 0.06 2.26 7.82 -2.39 -0.02 2.24 16 Total: -1.00 -70.58 383.46 3.19 -67.39 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.18 Total: 36.25 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 6.02 Total: -7.58 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.00 Total: -118.82 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.58 3.19 -67.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098432757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.744 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds