Wall clock time and date at job start Tue Mar 31 2020 22:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00211 * 2 1 4 4 H 1.48502 * 109.47105 * 264.68902 * 3 2 1 5 5 H 1.48500 * 109.47215 * 24.68841 * 3 2 1 6 6 H 1.48504 * 109.47388 * 144.68964 * 3 2 1 7 7 C 1.38810 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00046 * 339.77761 * 7 2 1 9 9 N 1.36938 * 120.00225 * 159.77748 * 7 2 1 10 10 C 1.47222 * 126.70033 * 162.11992 * 9 7 2 11 11 C 1.53803 * 106.35476 * 148.74980 * 10 9 7 12 12 H 1.09000 * 111.63119 * 257.32948 * 11 10 9 13 13 C 1.54183 * 109.12551 * 132.67056 * 11 10 9 14 14 C 1.54857 * 104.29970 * 223.08111 * 13 11 10 15 15 C 1.56224 * 103.17242 * 37.76639 * 14 13 11 16 16 C 1.54185 * 103.65124 * 322.65964 * 15 14 13 17 17 N 1.46490 * 111.61409 * 260.32643 * 16 15 14 18 18 C 1.34776 * 120.00511 * 298.58602 * 17 16 15 19 19 O 1.21581 * 119.99715 * 0.02562 * 18 17 16 20 20 C 1.47652 * 120.00383 * 180.02562 * 18 17 16 21 21 C 1.40209 * 119.97262 * 359.97438 * 20 18 17 22 22 C 1.36323 * 120.66468 * 180.02562 * 21 20 18 23 23 C 1.39361 * 120.24030 * 0.02658 * 22 21 20 24 24 N 1.37397 * 133.24652 * 179.97438 * 23 22 21 25 25 H 0.96992 * 125.01031 * 0.02562 * 24 23 22 26 26 C 1.36864 * 109.97744 * 180.26306 * 24 23 22 27 27 C 1.34192 * 109.96341 * 359.55659 * 26 24 23 28 28 C 1.40869 * 119.64134 * 359.97438 * 23 22 21 29 29 C 1.39150 * 119.97350 * 180.02562 * 20 18 17 30 30 C 1.47221 * 126.69896 * 342.09921 * 9 7 2 31 31 H 0.96999 * 120.00023 * 359.97438 * 1 2 3 32 32 H 1.09004 * 110.07909 * 267.96835 * 10 9 7 33 33 H 1.08997 * 110.08091 * 29.47068 * 10 9 7 34 34 H 1.08994 * 110.46997 * 341.78906 * 13 11 10 35 35 H 1.09009 * 110.46407 * 104.37995 * 13 11 10 36 36 H 1.08998 * 110.75865 * 156.45261 * 14 13 11 37 37 H 1.08999 * 110.75580 * 279.82843 * 14 13 11 38 38 H 1.09002 * 111.85392 * 203.63675 * 15 14 13 39 39 H 1.09000 * 109.69470 * 80.63648 * 15 14 13 40 40 H 0.97003 * 120.00222 * 118.58690 * 17 16 15 41 41 H 1.07994 * 119.66588 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.87665 * 180.02562 * 22 21 20 43 43 H 1.08003 * 125.01366 * 179.70232 * 26 24 23 44 44 H 1.07994 * 126.54516 * 180.14799 * 27 26 24 45 45 H 1.08005 * 120.30532 * 359.97438 * 29 20 18 46 46 H 1.09002 * 110.07904 * 92.03296 * 30 9 7 47 47 H 1.09001 * 110.12792 * 330.50022 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6099 1.9815 -1.3941 5 1 1.3961 2.6824 0.5848 6 1 3.4872 1.4751 0.8093 7 6 2.0102 -1.2021 -0.0005 8 1 1.5202 -2.1088 0.3224 9 7 3.3163 -1.2385 -0.4105 10 6 4.2939 -2.3056 -0.1401 11 6 5.2460 -2.3368 -1.3476 12 1 5.0181 -3.1657 -2.0177 13 6 6.7020 -2.3781 -0.8419 14 6 7.4524 -1.3772 -1.7547 15 6 6.4131 -0.2279 -1.9529 16 6 5.0644 -0.9691 -2.0474 17 7 4.6309 -1.1255 -3.4380 18 6 4.3956 -0.0370 -4.1970 19 8 4.5435 1.0748 -3.7278 20 6 3.9582 -0.1946 -5.5984 21 6 3.7883 -1.4770 -6.1392 22 6 3.3855 -1.6389 -7.4314 23 6 3.1372 -0.5269 -8.2338 24 7 2.7316 -0.3788 -9.5381 25 1 2.5406 -1.1086 -10.1477 26 6 2.6418 0.9503 -9.8519 27 6 2.9686 1.6960 -8.7852 28 6 3.3043 0.7670 -7.7023 29 6 3.7159 0.9297 -6.3817 30 6 4.0169 -0.2185 -1.2080 31 1 -0.4850 0.8400 0.0004 32 1 4.8507 -2.0812 0.7697 33 1 3.7840 -3.2637 -0.0397 34 1 6.7534 -2.0576 0.1985 35 1 7.1160 -3.3803 -0.9539 36 1 8.3523 -1.0066 -1.2639 37 1 7.6949 -1.8356 -2.7134 38 1 6.6022 0.3373 -2.8655 39 1 6.4252 0.4320 -1.0854 40 1 4.5133 -2.0125 -3.8125 41 1 3.9785 -2.3453 -5.5258 42 1 3.2583 -2.6327 -7.8348 43 1 2.3488 1.3413 -10.8151 44 1 2.9858 2.7747 -8.7355 45 1 3.8458 1.9194 -5.9695 46 1 4.5083 0.4984 -0.5502 47 1 3.3123 0.2958 -1.8616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099007540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:45 Heat of formation + Delta-G solvation = 57.934661 kcal Electronic energy + Delta-G solvation = -29902.675661 eV Core-core repulsion = 26051.420125 eV Total energy + Delta-G solvation = -3851.255536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41508 -40.30046 -38.39378 -36.44760 -34.62330 -33.46725 -32.11088 -31.68394 -30.24440 -29.36128 -28.93952 -27.89504 -25.24383 -24.49040 -23.41562 -22.43320 -21.38231 -20.95226 -20.36042 -19.52757 -19.04339 -18.26709 -17.27308 -16.70141 -16.38474 -15.74871 -15.22331 -15.00212 -14.77764 -14.53093 -14.18215 -14.11289 -13.90693 -13.79092 -13.28822 -13.17695 -13.00091 -12.80611 -12.79073 -12.43676 -11.96192 -11.84697 -11.49754 -11.38168 -11.24972 -11.00018 -10.98832 -10.84172 -10.66634 -10.42615 -10.06129 -10.03022 -9.94101 -9.92089 -9.44917 -9.27975 -8.74070 -8.52004 -8.32843 -7.91209 -6.98059 -5.85192 -3.16530 0.96376 1.16618 2.53657 2.89247 3.15193 3.46987 3.55779 3.62052 3.64722 4.04057 4.51878 4.63090 4.64552 4.68477 4.79143 4.89278 4.95916 5.07292 5.13985 5.26101 5.30758 5.41968 5.46095 5.53992 5.62112 5.64290 5.71122 5.78392 5.79064 5.88729 5.94011 5.95047 6.08615 6.17627 6.22574 6.31042 6.38117 6.40921 6.47908 6.49540 6.56211 6.60040 6.61536 6.80606 6.84467 6.93884 7.13842 7.27073 7.76093 7.90388 8.39522 8.62661 8.90089 9.77982 10.28695 11.30579 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003909 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.300229 B = 7161.210534 C = 8414.244775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.304 1.304 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.606 5.606 10 C 0.137 3.863 11 C -0.104 4.104 12 H 0.082 0.918 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.121 4.121 16 C 0.164 3.836 17 N -0.703 5.703 18 C 0.560 3.440 19 O -0.534 6.534 20 C -0.157 4.157 21 C -0.063 4.063 22 C -0.138 4.138 23 C 0.113 3.887 24 N -0.595 5.595 25 H 0.415 0.585 26 C 0.041 3.959 27 C -0.191 4.191 28 C -0.123 4.123 29 C -0.001 4.001 30 C 0.110 3.890 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.395 0.605 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.171 0.829 44 H 0.149 0.851 45 H 0.137 0.863 46 H 0.034 0.966 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.092 -4.740 -19.293 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.232 1.232 6 H -0.201 1.201 7 C -0.368 4.368 8 H 0.110 0.890 9 N -0.331 5.331 10 C 0.011 3.989 11 C -0.124 4.124 12 H 0.100 0.900 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.160 4.160 16 C 0.077 3.923 17 N -0.354 5.354 18 C 0.348 3.652 19 O -0.411 6.411 20 C -0.162 4.162 21 C -0.083 4.083 22 C -0.158 4.158 23 C 0.005 3.995 24 N -0.197 5.197 25 H 0.252 0.748 26 C -0.084 4.084 27 C -0.216 4.216 28 C -0.127 4.127 29 C -0.021 4.021 30 C -0.017 4.017 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.230 0.770 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.188 0.812 44 H 0.167 0.833 45 H 0.155 0.845 46 H 0.051 0.949 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.873 -3.913 -18.981 22.728 hybrid contribution 0.049 0.210 -0.501 0.545 sum 11.922 -3.704 -19.482 23.139 Atomic orbital electron populations 1.69813 1.05497 1.26515 1.53728 1.24928 0.95151 0.97406 0.99930 0.87087 0.79085 0.84710 0.78655 1.20034 1.23174 1.20087 1.18623 0.83048 0.95227 1.39922 0.88959 1.44881 1.08388 1.20134 1.59680 1.21515 0.90417 0.93388 0.93612 1.22759 0.95848 0.95636 0.98179 0.89972 1.22444 0.93975 0.99029 0.99784 1.22749 0.97733 0.96302 0.99254 1.22932 0.93109 0.97179 1.02759 1.21606 0.94381 0.95884 0.80409 1.45814 1.69047 1.08514 1.12057 1.18084 0.77161 0.84699 0.85246 1.90785 1.51814 1.24841 1.73690 1.19701 1.08254 0.93778 0.94450 1.20644 0.97079 0.96289 0.94313 1.19614 1.06259 0.96148 0.93809 1.18411 1.00429 0.95642 0.85042 1.41760 1.59823 1.07651 1.10499 0.74809 1.21805 1.04275 0.82155 1.00142 1.21777 1.09098 0.98906 0.91841 1.19155 1.06598 0.92479 0.94502 1.20700 0.91925 0.98958 0.90506 1.22165 0.94167 0.92202 0.93132 0.92797 0.95409 0.93095 0.90894 0.91665 0.91780 0.91947 0.90607 0.90828 0.76955 0.85361 0.85809 0.81184 0.83331 0.84479 0.94862 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.33 13.97 55.49 0.78 -28.56 16 2 C 0.02 0.75 5.45 -17.43 -0.09 0.65 16 3 Si 0.87 24.56 24.36 -169.99 -4.14 20.42 16 4 H -0.27 -7.87 6.36 56.52 0.36 -7.51 16 5 H -0.30 -8.52 7.11 56.52 0.40 -8.12 16 6 H -0.28 -7.56 6.49 56.52 0.37 -7.20 16 7 C -0.24 -7.11 10.67 -15.06 -0.16 -7.27 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 9 N -0.61 -15.23 3.21 -171.09 -0.55 -15.78 16 10 C 0.14 2.70 6.79 -3.23 -0.02 2.68 16 11 C -0.10 -1.64 3.67 -88.69 -0.33 -1.97 16 12 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 13 C -0.11 -1.46 6.38 -25.13 -0.16 -1.62 16 14 C -0.12 -1.54 6.92 -24.02 -0.17 -1.71 16 15 C -0.12 -1.98 5.75 -24.38 -0.14 -2.12 16 16 C 0.16 2.99 0.94 -129.89 -0.12 2.87 16 17 N -0.70 -11.73 5.18 -46.82 -0.24 -11.98 16 18 C 0.56 10.31 6.74 -12.42 -0.08 10.22 16 19 O -0.53 -11.75 13.83 5.29 0.07 -11.68 16 20 C -0.16 -2.45 5.87 -104.98 -0.62 -3.07 16 21 C -0.06 -0.79 9.46 -39.53 -0.37 -1.16 16 22 C -0.14 -1.50 10.00 -39.85 -0.40 -1.90 16 23 C 0.11 1.31 7.27 -83.96 -0.61 0.70 16 24 N -0.59 -4.92 6.05 -10.61 -0.06 -4.99 16 25 H 0.42 2.04 8.96 -40.82 -0.37 1.68 16 26 C 0.04 0.33 11.81 -16.73 -0.20 0.13 16 27 C -0.19 -2.02 11.09 -37.65 -0.42 -2.44 16 28 C -0.12 -1.63 6.36 -105.16 -0.67 -2.30 16 29 C 0.00 -0.02 9.64 -38.86 -0.37 -0.40 16 30 C 0.11 2.62 3.50 -3.23 -0.01 2.61 16 31 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 32 H 0.03 0.54 7.12 -51.93 -0.37 0.17 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.97 7.17 -51.93 -0.37 0.59 16 35 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.30 6.69 -51.93 -0.35 0.95 16 39 H 0.07 1.28 7.18 -51.93 -0.37 0.91 16 40 H 0.40 5.34 6.28 -40.82 -0.26 5.08 16 41 H 0.13 1.29 6.36 -52.49 -0.33 0.95 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.14 2.15 7.64 -52.48 -0.40 1.75 16 46 H 0.03 0.85 5.15 -51.93 -0.27 0.58 16 47 H 0.07 2.01 4.36 -51.93 -0.23 1.79 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -37.62 362.60 -9.94 -47.56 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.31 Total: 5.63 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -4.94 Total: -6.10 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.08 Total: -61.30 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.14 Total: 20.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.62 -9.94 -47.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099007540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.494 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds