Wall clock time and date at job start Tue Mar 31 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48498 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46820 * 299.99538 * 3 2 1 6 6 H 1.48497 * 109.46961 * 59.99601 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99957 * 164.51542 * 7 2 1 9 9 N 1.36939 * 120.00205 * 344.51418 * 7 2 1 10 10 C 1.47000 * 121.37519 * 335.97906 * 9 7 2 11 11 C 1.50327 * 109.16339 * 222.96589 * 10 9 7 12 12 C 1.29452 * 123.65264 * 349.27440 * 11 10 9 13 13 C 1.50695 * 117.69233 * 180.57855 * 12 11 10 14 14 C 1.53000 * 109.47225 * 95.00476 * 13 12 11 15 15 N 1.46494 * 109.47191 * 179.97438 * 14 13 12 16 16 C 1.34784 * 120.00109 * 179.97438 * 15 14 13 17 17 O 1.21574 * 119.99459 * 0.02562 * 16 15 14 18 18 C 1.47650 * 119.99976 * 179.97438 * 16 15 14 19 19 C 1.40202 * 119.97535 * 359.73090 * 18 16 15 20 20 C 1.36322 * 120.67123 * 179.68984 * 19 18 16 21 21 C 1.39380 * 120.23185 * 0.60089 * 20 19 18 22 22 N 1.37397 * 133.24636 * 179.70374 * 21 20 19 23 23 H 0.97000 * 125.00823 * 359.97438 * 22 21 20 24 24 C 1.36859 * 109.98030 * 179.97438 * 22 21 20 25 25 C 1.34193 * 109.95802 * 0.02562 * 24 22 21 26 26 C 1.40870 * 119.63872 * 359.68020 * 21 20 19 27 27 C 1.39156 * 119.97240 * 179.97438 * 18 16 15 28 28 C 1.49965 * 124.61263 * 0.34455 * 12 11 10 29 29 C 1.47340 * 121.37537 * 155.99196 * 9 7 2 30 30 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.52979 * 103.05631 * 10 9 7 32 32 H 1.08999 * 109.52447 * 342.86621 * 10 9 7 33 33 H 1.08007 * 118.17039 * 168.99539 * 11 10 9 34 34 H 1.09004 * 109.46594 * 215.00062 * 13 12 11 35 35 H 1.08997 * 109.47427 * 334.99700 * 13 12 11 36 36 H 1.08999 * 109.46897 * 299.99806 * 14 13 12 37 37 H 1.09000 * 109.46858 * 59.99555 * 14 13 12 38 38 H 0.97000 * 120.00167 * 0.02562 * 15 14 13 39 39 H 1.08002 * 119.67040 * 359.97438 * 19 18 16 40 40 H 1.08000 * 119.88830 * 180.28067 * 20 19 18 41 41 H 1.08001 * 125.02036 * 180.02562 * 24 22 21 42 42 H 1.08001 * 126.53945 * 180.02562 * 25 24 22 43 43 H 1.07997 * 120.30170 * 0.02562 * 27 18 16 44 44 H 1.08998 * 109.43384 * 221.05427 * 28 12 11 45 45 H 1.09000 * 109.13218 * 101.66209 * 28 12 11 46 46 H 1.08996 * 109.78029 * 237.78998 * 29 9 7 47 47 H 1.09002 * 109.77908 * 358.60056 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2492 9 7 1.3628 -2.3664 0.3177 10 6 0.1443 -2.3650 1.1401 11 6 0.2246 -3.4821 2.1428 12 6 1.1231 -4.4133 2.1090 13 6 1.0701 -5.4767 3.1754 14 6 0.2971 -6.6880 2.6499 15 7 0.2461 -7.7220 3.6864 16 6 -0.3890 -8.8863 3.4462 17 8 -0.9191 -9.0785 2.3691 18 6 -0.4399 -9.9286 4.4907 19 6 0.1774 -9.7090 5.7302 20 6 0.1338 -10.6590 6.7068 21 6 -0.5173 -11.8702 6.4791 22 7 -0.7172 -12.9907 7.2487 23 1 -0.3972 -13.1064 8.1570 24 6 -1.4345 -13.9197 6.5447 25 6 -1.7191 -13.4475 5.3212 26 6 -1.1364 -12.1053 5.2358 27 6 -1.0962 -11.1303 4.2422 28 6 2.2101 -4.5113 1.0805 29 6 1.8589 -3.6722 -0.1510 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7266 -2.5110 0.5012 32 1 0.0585 -1.4122 1.6624 33 1 -0.5056 -3.5066 2.9383 34 1 2.0841 -5.7788 3.4379 35 1 0.5688 -5.0810 4.0587 36 1 -0.7168 -6.3859 2.3874 37 1 0.7985 -7.0837 1.7667 38 1 0.6687 -7.5684 4.5459 39 1 0.6888 -8.7758 5.9148 40 1 0.6098 -10.4747 7.6586 41 1 -1.7281 -14.8894 6.9186 42 1 -2.2729 -13.9586 4.5475 43 1 -1.5694 -11.3055 3.2873 44 1 2.3357 -5.5525 0.7836 45 1 3.1430 -4.1470 1.5108 46 1 1.0846 -4.1745 -0.7308 47 1 2.7475 -3.5300 -0.7661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161063280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:11 Heat of formation + Delta-G solvation = 58.152160 kcal Electronic energy + Delta-G solvation = -27322.450912 eV Core-core repulsion = 23471.204807 eV Total energy + Delta-G solvation = -3851.246105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67780 -39.79694 -37.89614 -36.85804 -35.39145 -33.54508 -32.39803 -31.44662 -30.28918 -29.71709 -29.24163 -28.39279 -25.47402 -23.93761 -22.83985 -22.71736 -22.30484 -21.26040 -20.91928 -20.29587 -18.56332 -17.62871 -17.49694 -16.61403 -16.11684 -15.65583 -15.45718 -15.02477 -14.84538 -14.61153 -14.39999 -14.04806 -13.96299 -13.91230 -13.56949 -13.50777 -13.28567 -13.13019 -12.75514 -12.59367 -12.18769 -11.93920 -11.87755 -11.51687 -11.37349 -11.27338 -10.95012 -10.88368 -10.71219 -10.27150 -10.23399 -10.21998 -9.96795 -9.77190 -9.49637 -9.10033 -8.63816 -8.62167 -8.19038 -7.87461 -6.68376 -5.75045 -3.13598 0.65934 0.86578 2.28353 2.64477 2.79833 2.87367 3.23229 3.39950 3.47339 3.49675 3.70123 4.24972 4.38702 4.52887 4.60223 4.63434 4.86650 5.00918 5.13964 5.16760 5.19091 5.32194 5.34786 5.43732 5.52608 5.61256 5.65909 5.70112 5.84731 5.93605 6.05359 6.06946 6.12427 6.20515 6.20985 6.26781 6.29589 6.43171 6.45606 6.60513 6.65989 6.83952 6.95578 7.01764 7.28510 7.37074 7.44177 7.48405 7.79356 7.93153 8.19224 8.43114 9.24624 9.87597 10.46421 11.35346 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038698 B = 0.001618 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.380963 B =17305.136216 C =17505.515251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.092 4.092 14 C 0.124 3.876 15 N -0.727 5.727 16 C 0.559 3.441 17 O -0.540 6.540 18 C -0.164 4.164 19 C -0.066 4.066 20 C -0.136 4.136 21 C 0.114 3.886 22 N -0.593 5.593 23 H 0.417 0.583 24 C 0.044 3.956 25 C -0.192 4.192 26 C -0.123 4.123 27 C 0.000 4.000 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.397 0.603 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.172 0.828 42 H 0.150 0.850 43 H 0.138 0.862 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.024 0.976 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.851 -27.417 18.117 32.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.166 4.166 12 C -0.143 4.143 13 C -0.129 4.129 14 C 0.002 3.998 15 N -0.378 5.378 16 C 0.347 3.653 17 O -0.418 6.418 18 C -0.168 4.168 19 C -0.086 4.086 20 C -0.157 4.157 21 C 0.005 3.995 22 N -0.196 5.196 23 H 0.253 0.747 24 C -0.081 4.081 25 C -0.217 4.217 26 C -0.128 4.128 27 C -0.019 4.019 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.190 0.810 42 H 0.168 0.832 43 H 0.156 0.844 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.297 -27.425 17.423 32.517 hybrid contribution 0.702 0.857 1.064 1.536 sum -0.595 -26.568 18.487 32.372 Atomic orbital electron populations 1.70031 1.05161 1.25294 1.54986 1.24988 0.95382 0.98249 1.01408 0.86190 0.79230 0.83974 0.77218 1.20339 1.21778 1.21659 1.19233 0.92220 0.84409 1.41462 0.91368 1.44137 1.29259 1.01138 1.57346 1.19703 0.88637 0.94743 0.89779 1.23118 0.96624 0.97416 0.99462 1.20221 0.99306 0.96637 0.98139 1.20911 1.00000 0.94153 0.97882 1.21451 1.01319 0.86653 0.90413 1.46002 1.56921 1.16480 1.18429 1.18159 0.78289 0.81789 0.87050 1.90788 1.45951 1.79717 1.25360 1.19645 1.05857 0.96103 0.95230 1.20638 0.97553 0.98539 0.91886 1.19653 1.03750 0.91686 1.00585 1.18444 1.00085 0.89240 0.91688 1.41802 1.48826 1.13417 1.15549 0.74654 1.21857 0.98222 0.95133 0.92903 1.21797 1.07383 0.94575 0.97899 1.19171 1.03736 0.95966 0.93921 1.20703 0.93407 0.89869 0.97921 1.20758 0.96630 0.99025 0.96613 1.20955 0.97338 0.87205 0.92880 0.93714 0.94432 0.89175 0.89071 0.91475 0.91548 0.91172 0.91162 0.76784 0.85309 0.85675 0.81036 0.83195 0.84398 0.92816 0.92000 0.95826 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.65 11.08 55.49 0.61 -26.03 16 2 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 3 Si 0.90 21.93 29.58 -169.99 -5.03 16.91 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.79 9.71 -15.06 -0.15 -6.94 16 8 H 0.07 1.86 7.88 -52.48 -0.41 1.45 16 9 N -0.60 -15.28 3.01 -173.68 -0.52 -15.80 16 10 C 0.20 4.80 5.23 -5.10 -0.03 4.78 16 11 C -0.15 -2.88 9.47 -35.78 -0.34 -3.22 16 12 C -0.14 -2.49 5.11 -100.99 -0.52 -3.00 16 13 C -0.09 -1.21 5.32 -27.89 -0.15 -1.36 16 14 C 0.12 1.68 5.66 -4.04 -0.02 1.65 16 15 N -0.73 -8.31 5.51 -61.32 -0.34 -8.64 16 16 C 0.56 7.53 7.76 -12.41 -0.10 7.43 16 17 O -0.54 -9.39 16.33 5.30 0.09 -9.30 16 18 C -0.16 -1.81 5.87 -104.98 -0.62 -2.43 16 19 C -0.07 -0.55 9.46 -39.53 -0.37 -0.92 16 20 C -0.14 -1.00 10.00 -39.85 -0.40 -1.40 16 21 C 0.11 0.94 7.27 -83.95 -0.61 0.33 16 22 N -0.59 -3.17 6.05 -10.61 -0.06 -3.23 16 23 H 0.42 0.92 8.96 -40.82 -0.37 0.55 16 24 C 0.04 0.22 11.81 -16.73 -0.20 0.03 16 25 C -0.19 -1.42 11.09 -37.65 -0.42 -1.83 16 26 C -0.12 -1.20 6.36 -105.16 -0.67 -1.87 16 27 C 0.00 0.01 9.64 -38.86 -0.37 -0.37 16 28 C -0.09 -1.64 5.94 -28.19 -0.17 -1.81 16 29 C 0.14 3.07 6.58 -3.53 -0.02 3.05 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 33 H 0.09 1.59 7.73 -52.48 -0.41 1.18 16 34 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.07 0.81 7.78 -51.93 -0.40 0.40 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 38 H 0.40 3.30 6.48 -40.82 -0.26 3.04 16 39 H 0.13 0.74 6.36 -52.49 -0.33 0.41 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.17 0.25 8.06 -52.49 -0.42 -0.17 16 42 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 1.56 7.64 -52.49 -0.40 1.16 16 44 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -34.84 386.69 -11.35 -46.19 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.69 Total: 2.13 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -5.23 Total: -8.04 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.31 Total: -53.71 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.84 -11.35 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161063280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.337 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds